Wall clock time and date at job start Tue Mar 31 2020 13:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00267 * 2 1 4 4 C 1.53000 * 109.46636 * 269.99928 * 3 2 1 5 5 C 1.53009 * 109.46928 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.46847 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99761 * 179.97438 * 2 1 3 8 8 O 1.21358 * 120.00104 * 181.00989 * 7 2 1 9 9 C 1.49318 * 120.00239 * 1.01029 * 7 2 1 10 10 O 1.21396 * 119.99788 * 4.06767 * 9 7 2 11 11 N 1.34770 * 120.00476 * 184.07030 * 9 7 2 12 12 C 1.39743 * 120.00484 * 173.26390 * 11 9 7 13 13 C 1.38990 * 120.00534 * 330.88105 * 12 11 9 14 14 C 1.37973 * 119.99410 * 180.02562 * 13 12 11 15 15 C 1.38941 * 120.00254 * 359.97438 * 14 13 12 16 16 O 1.35758 * 119.98937 * 179.97438 * 15 14 13 17 17 C 1.34798 * 117.00206 * 5.73083 * 16 15 14 18 18 H 1.08001 * 119.99759 * 354.91623 * 17 16 15 19 19 C 1.38654 * 120.00002 * 174.91202 * 17 16 15 20 20 N 1.31553 * 119.99808 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99722 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46974 * 90.00537 * 21 19 17 23 23 H 1.48502 * 109.46836 * 209.99982 * 21 19 17 24 24 H 1.48496 * 109.47315 * 329.99860 * 21 19 17 25 25 C 1.38930 * 120.01501 * 0.25693 * 15 14 13 26 26 C 1.37973 * 120.00550 * 359.48919 * 25 15 14 27 27 H 1.09004 * 109.47331 * 263.26306 * 1 2 3 28 28 H 1.08999 * 109.46964 * 23.26438 * 1 2 3 29 29 H 1.09002 * 109.47646 * 143.26126 * 1 2 3 30 30 H 1.08994 * 109.46880 * 29.99269 * 3 2 1 31 31 H 1.08996 * 109.47150 * 149.99706 * 3 2 1 32 32 H 1.09006 * 109.47135 * 299.99627 * 4 3 2 33 33 H 1.08996 * 109.47532 * 60.00012 * 4 3 2 34 34 H 1.08999 * 109.46449 * 299.99797 * 5 4 3 35 35 H 1.08996 * 109.47097 * 59.99633 * 5 4 3 36 36 H 1.00901 * 110.99508 * 179.97438 * 6 5 4 37 37 H 1.00895 * 110.99925 * 303.94887 * 6 5 4 38 38 H 0.97002 * 119.99504 * 353.27131 * 11 9 7 39 39 H 1.08005 * 120.00703 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.99603 * 179.97438 * 14 13 12 41 41 H 0.97011 * 119.99690 * 180.02562 * 20 19 17 42 42 H 1.07996 * 119.99692 * 179.72137 * 25 15 14 43 43 H 1.08000 * 120.00200 * 180.23236 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7102 -1.4425 5 6 3.2182 3.0350 -1.4426 6 7 3.4635 3.4586 -2.8276 7 6 2.1388 -1.1673 0.0005 8 8 3.3522 -1.1674 0.0190 9 6 1.3924 -2.4603 -0.0217 10 8 0.1820 -2.4609 -0.1148 11 7 2.0623 -3.6267 0.0616 12 6 1.3601 -4.8288 0.1827 13 6 0.1169 -4.8480 0.8039 14 6 -0.5760 -6.0351 0.9238 15 6 -0.0312 -7.2111 0.4232 16 8 -0.7130 -8.3791 0.5418 17 6 -1.9608 -8.3108 1.0472 18 1 -2.3446 -7.3697 1.4126 19 6 -2.7516 -9.4486 1.0976 20 7 -2.2839 -10.5949 0.6528 21 14 -4.4811 -9.3537 1.7972 22 1 -5.4392 -9.0378 0.7075 23 1 -4.8398 -10.6584 2.4090 24 1 -4.5391 -8.2896 2.8313 25 6 1.2136 -7.1931 -0.1934 26 6 1.9045 -6.0054 -0.3183 27 1 -0.3634 -0.1206 1.0206 28 1 -0.3633 0.9441 -0.4059 29 1 -0.3634 -0.8235 -0.6147 30 1 1.6084 2.0283 0.5137 31 1 3.1499 1.1383 0.5139 32 1 3.0416 0.9505 -1.9563 33 1 1.5001 1.8406 -1.9564 34 1 2.6294 3.7948 -0.9287 35 1 4.1705 2.9042 -0.9289 36 1 3.9679 4.3321 -2.8546 37 1 3.9522 2.7424 -3.3436 38 1 3.0320 -3.6318 0.0376 39 1 -0.3064 -3.9339 1.1935 40 1 -1.5418 -6.0501 1.4069 41 1 -2.8373 -11.3909 0.6878 42 1 1.6387 -8.1081 -0.5784 43 1 2.8705 -5.9908 -0.8011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333517678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:25 Heat of formation + Delta-G solvation = -75.097940 kcal Electronic energy + Delta-G solvation = -26035.971973 eV Core-core repulsion = 22081.799367 eV Total energy + Delta-G solvation = -3954.172606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23043 -40.86945 -39.89354 -38.28279 -37.63666 -36.08844 -35.27148 -34.16728 -31.93752 -31.73398 -29.93968 -27.95081 -27.46911 -26.75687 -24.58867 -23.87370 -22.74554 -22.16792 -21.01450 -19.95681 -19.28684 -18.64158 -18.38611 -17.59328 -17.34007 -16.85562 -16.56204 -16.30520 -16.17115 -15.89092 -15.65369 -15.55204 -15.29824 -15.12067 -14.68003 -14.53630 -14.15782 -14.08156 -13.69387 -13.58627 -13.44284 -13.33094 -13.12699 -13.04519 -12.74416 -12.47138 -12.41924 -12.31311 -12.12368 -11.79288 -11.41147 -11.16147 -10.65479 -10.41895 -9.90999 -9.84969 -9.64216 -8.65294 -8.46766 -6.13320 0.01659 0.50783 0.72979 1.19127 1.36606 1.45242 1.53503 2.02397 2.18350 2.37369 2.80750 3.13704 3.17845 3.50001 3.59071 3.90078 4.04781 4.07861 4.11549 4.25583 4.37964 4.41641 4.44997 4.52323 4.61619 4.63282 4.68053 4.78756 4.98489 5.02803 5.04914 5.10588 5.17785 5.29295 5.31134 5.37518 5.52867 5.66883 5.85177 6.01471 6.05439 6.18691 6.20822 6.54866 6.61767 6.86452 6.97966 7.76332 8.75704 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.002199 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.569987 B =12730.538989 C =13427.949832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.578 5.578 3 C 0.111 3.889 4 C -0.127 4.127 5 C 0.067 3.933 6 N -0.863 5.863 7 C 0.511 3.489 8 O -0.540 6.540 9 C 0.498 3.502 10 O -0.516 6.516 11 N -0.620 5.620 12 C 0.054 3.946 13 C -0.072 4.072 14 C -0.224 4.224 15 C 0.110 3.890 16 O -0.225 6.225 17 C -0.413 4.413 18 H 0.101 0.899 19 C -0.021 4.021 20 N -0.917 5.917 21 Si 1.017 2.983 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.254 1.254 25 C -0.178 4.178 26 C -0.075 4.075 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.033 0.967 36 H 0.352 0.648 37 H 0.343 0.657 38 H 0.428 0.572 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.273 0.727 42 H 0.130 0.870 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.778 27.099 -1.696 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.309 5.309 3 C -0.010 4.010 4 C -0.166 4.166 5 C -0.064 4.064 6 N -0.394 5.394 7 C 0.293 3.707 8 O -0.418 6.418 9 C 0.280 3.720 10 O -0.393 6.393 11 N -0.267 5.267 12 C -0.039 4.039 13 C -0.092 4.092 14 C -0.244 4.244 15 C 0.059 3.941 16 O -0.131 6.131 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.219 4.219 20 N -0.555 5.555 21 Si 0.836 3.164 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.198 4.198 26 C -0.095 4.095 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.267 0.733 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.148 0.852 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.773 26.766 -1.855 28.228 hybrid contribution 0.604 -0.614 0.455 0.974 sum 9.377 26.152 -1.400 27.818 Atomic orbital electron populations 1.22547 0.76456 1.05474 1.03850 1.47821 1.09063 1.05015 1.69050 1.21774 0.98215 0.83467 0.97589 1.21845 1.01391 0.96994 0.96344 1.21667 0.98668 0.96148 0.89952 1.58699 1.57676 1.09129 1.13897 1.19806 0.87093 0.85251 0.78562 1.90742 1.13679 1.87411 1.49987 1.20412 0.87716 0.85687 0.78149 1.90688 1.14323 1.86755 1.47508 1.42860 1.11371 1.03250 1.69179 1.17375 0.95219 0.85488 1.05825 1.20876 0.94038 0.97286 0.96953 1.21097 1.02711 0.92390 1.08166 1.19960 0.93138 0.86340 0.94666 1.83935 1.27930 1.27256 1.74009 1.21801 0.88245 0.98038 1.40857 0.88178 1.26549 1.04338 0.93666 0.97321 1.70175 1.39173 1.00453 1.45667 0.84612 0.74475 0.78695 0.78619 1.18917 1.19513 1.17737 1.20295 0.94065 0.99484 1.05925 1.20742 1.00855 0.89436 0.98492 0.91695 0.88494 0.88909 0.86790 0.90025 0.93516 0.91018 0.89647 0.94916 0.83448 0.84456 0.73318 0.84763 0.85933 0.91796 0.85233 0.81902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 9.58 127.77 1.22 2.14 16 2 N -0.58 -10.37 2.87 -848.53 -2.44 -12.81 16 3 C 0.11 1.41 5.38 86.38 0.47 1.88 16 4 C -0.13 -1.63 5.80 30.60 0.18 -1.45 16 5 C 0.07 0.65 6.79 86.31 0.59 1.24 16 6 N -0.86 -8.95 9.62 -186.71 -1.80 -10.75 16 7 C 0.51 11.97 7.74 87.23 0.67 12.64 16 8 O -0.54 -14.07 16.06 -3.27 -0.05 -14.12 16 9 C 0.50 13.34 7.54 87.23 0.66 14.00 16 10 O -0.52 -15.67 10.56 -3.39 -0.04 -15.71 16 11 N -0.62 -16.37 5.34 -304.76 -1.63 -18.00 16 12 C 0.05 1.78 6.35 38.24 0.24 2.02 16 13 C -0.07 -2.70 8.66 22.39 0.19 -2.51 16 14 C -0.22 -9.97 9.16 22.38 0.20 -9.77 16 15 C 0.11 5.39 6.65 22.60 0.15 5.54 16 16 O -0.23 -13.34 9.75 -22.50 -0.22 -13.56 16 17 C -0.41 -23.93 9.48 67.92 0.64 -23.29 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 19 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 20 N -0.92 -55.72 13.67 21.61 0.30 -55.43 16 21 Si 1.02 42.78 29.55 68.60 2.03 44.81 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 25 C -0.18 -7.22 9.98 22.37 0.22 -6.99 16 26 C -0.08 -2.42 9.94 22.39 0.22 -2.19 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.10 0.98 8.02 -2.39 -0.02 0.96 16 29 H 0.09 1.95 5.30 -3.26 -0.02 1.93 16 30 H 0.11 0.81 8.07 -2.39 -0.02 0.79 16 31 H 0.08 1.18 7.41 -2.39 -0.02 1.16 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.78 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.35 2.42 9.08 -89.69 -0.81 1.61 16 37 H 0.34 3.40 8.99 -89.70 -0.81 2.59 16 38 H 0.43 9.16 8.28 -92.71 -0.77 8.39 16 39 H 0.13 4.80 6.14 -2.91 -0.02 4.78 16 40 H 0.12 5.57 5.63 -2.91 -0.02 5.56 16 41 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 42 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 43 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -73.42 364.56 0.98 -72.44 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -1.31 Total: 30.57 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 6.13 Total: -7.44 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -5.57 Total: -96.99 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.31 Total: -43.39 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -73.42 0.98 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333517678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.660 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds