Wall clock time and date at job start Tue Mar 31 2020 12:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47489 * 2 1 4 4 C 1.46498 * 120.00102 * 275.00246 * 3 2 1 5 5 C 1.50699 * 109.47135 * 274.99746 * 4 3 2 6 6 H 1.07999 * 119.99976 * 0.02562 * 5 4 3 7 7 C 1.37887 * 119.99963 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99723 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47166 * 90.00283 * 9 7 5 11 11 H 1.48500 * 109.47208 * 210.00194 * 9 7 5 12 12 H 1.48503 * 109.47217 * 330.00374 * 9 7 5 13 13 S 1.65599 * 119.99993 * 95.00361 * 3 2 1 14 14 O 1.42101 * 106.40388 * 336.45991 * 13 3 2 15 15 O 1.42104 * 106.40216 * 203.54005 * 13 3 2 16 16 N 1.65599 * 107.22257 * 90.00001 * 13 3 2 17 17 C 1.46500 * 119.99753 * 64.99813 * 16 13 3 18 18 C 1.53123 * 109.57501 * 95.30162 * 17 16 13 19 19 C 1.53034 * 109.27992 * 177.60191 * 18 17 16 20 20 N 1.46847 * 109.51345 * 300.80438 * 19 18 17 21 21 O 1.46298 * 110.99811 * 185.84709 * 20 19 18 22 22 C 1.42903 * 113.99843 * 239.99650 * 21 20 19 23 23 C 1.46843 * 111.20124 * 61.74903 * 20 19 18 24 24 C 1.53042 * 109.52278 * 298.25596 * 23 20 19 25 25 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46864 * 299.99846 * 1 2 3 27 27 H 1.08994 * 109.47205 * 59.99708 * 1 2 3 28 28 H 1.09000 * 109.46864 * 240.00154 * 2 1 3 29 29 H 1.09004 * 109.47171 * 120.00298 * 2 1 3 30 30 H 1.09002 * 109.47213 * 34.99992 * 4 3 2 31 31 H 1.08999 * 109.47314 * 154.99965 * 4 3 2 32 32 H 0.96998 * 120.00005 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99982 * 245.00688 * 16 13 3 34 34 H 1.09003 * 109.52476 * 335.13268 * 17 16 13 35 35 H 1.08997 * 109.51083 * 57.64785 * 18 17 16 36 36 H 1.08998 * 109.48980 * 297.53716 * 18 17 16 37 37 H 1.09002 * 109.46271 * 180.79158 * 19 18 17 38 38 H 1.08994 * 109.46242 * 60.81457 * 19 18 17 39 39 H 1.09005 * 109.47009 * 300.00090 * 22 21 20 40 40 H 1.08992 * 109.46920 * 60.00045 * 22 21 20 41 41 H 1.09007 * 109.46914 * 180.02562 * 22 21 20 42 42 H 1.08993 * 109.46313 * 58.27251 * 23 20 19 43 43 H 1.09000 * 109.46480 * 178.25361 * 23 20 19 44 44 H 1.08997 * 109.50758 * 179.11703 * 24 23 20 45 45 H 1.08998 * 109.50897 * 299.20258 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1720 1.1109 -1.3840 7 6 3.8525 2.3605 -3.0849 8 7 3.0276 3.1854 -3.6919 9 14 5.5088 1.9635 -3.8519 10 1 5.3728 0.7802 -4.7388 11 1 5.9778 3.1267 -4.6469 12 1 6.4927 1.6678 -2.7796 13 16 2.4123 2.1200 1.4287 14 8 1.6870 1.4414 2.4448 15 8 2.3059 3.5185 1.1998 16 7 4.0145 1.8135 1.7137 17 6 5.0352 2.3522 0.8113 18 6 5.5721 3.6715 1.3733 19 6 6.6792 4.1977 0.4571 20 7 7.7587 3.2058 0.3726 21 8 8.8956 3.7314 -0.3834 22 6 9.2189 2.9720 -1.5500 23 6 7.2779 1.9457 -0.2082 24 6 6.1884 1.3524 0.6881 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3617 1.8097 -1.9453 31 1 2.0923 3.1802 -1.0756 32 1 3.2794 3.5880 -4.5378 33 1 4.2772 1.2772 2.4781 34 1 4.5973 2.5261 -0.1716 35 1 5.9749 3.5046 2.3722 36 1 4.7638 4.4011 1.4235 37 1 7.0732 5.1299 0.8619 38 1 6.2723 4.3773 -0.5380 39 1 9.4690 1.9511 -1.2611 40 1 8.3625 2.9593 -2.2241 41 1 10.0720 3.4259 -2.0542 42 1 6.8684 2.1360 -1.2001 43 1 8.1067 1.2422 -0.2862 44 1 5.8207 0.4251 0.2487 45 1 6.6010 1.1484 1.6761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363927765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:17 Heat of formation + Delta-G solvation = -73.602770 kcal Electronic energy + Delta-G solvation = -28197.321877 eV Core-core repulsion = 24378.658058 eV Total energy + Delta-G solvation = -3818.663819 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.156 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -39.02154 -36.73996 -36.35824 -36.02272 -35.21260 -33.36306 -32.87676 -30.86815 -30.01712 -29.02551 -26.76497 -26.52999 -23.25523 -22.91804 -22.43562 -21.80916 -19.78481 -18.74570 -17.50659 -17.11646 -16.90997 -16.50924 -15.87029 -15.55764 -15.22545 -14.95275 -14.52561 -14.01781 -13.89842 -13.77374 -13.36800 -13.20434 -13.11288 -12.86544 -12.39860 -12.21121 -12.10654 -12.02233 -11.77054 -11.54936 -11.47065 -11.43757 -11.33146 -11.20705 -11.12682 -10.82884 -10.75874 -10.60550 -10.55363 -10.31250 -10.16835 -10.01242 -9.79021 -9.02907 -8.66319 -8.35515 -8.14815 -6.28345 -4.34878 1.28365 2.83899 3.01239 3.09639 3.16414 3.50941 4.13091 4.16447 4.50296 4.92127 5.00257 5.02603 5.13485 5.21696 5.33257 5.35269 5.37829 5.44214 5.52404 5.61492 5.65512 5.72862 5.78746 5.83354 5.96098 6.01095 6.03781 6.06280 6.13523 6.23223 6.28567 6.40281 6.60826 6.64065 6.75103 6.85264 7.24701 7.27312 7.28790 7.42393 7.59728 7.70908 7.99620 8.69491 9.29182 10.78910 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.006667 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.574403 B = 4198.968452 C = 5583.286794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.993 5.993 4 C 0.242 3.758 5 C -0.546 4.546 6 H 0.068 0.932 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.260 1.260 13 S 2.784 3.216 14 O -1.002 7.002 15 O -0.978 6.978 16 N -1.122 6.122 17 C 0.125 3.875 18 C -0.127 4.127 19 C 0.029 3.971 20 N -0.328 5.328 21 O -0.246 6.246 22 C -0.003 4.003 23 C -0.008 4.008 24 C -0.108 4.108 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.266 0.734 33 H 0.405 0.595 34 H 0.137 0.863 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -4.684 5.949 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.835 5.835 4 C 0.119 3.881 5 C -0.585 4.585 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.185 1.185 13 S 2.792 3.208 14 O -0.986 6.986 15 O -0.962 6.962 16 N -0.879 5.879 17 C 0.019 3.981 18 C -0.167 4.167 19 C -0.100 4.100 20 N -0.096 5.096 21 O -0.250 6.250 22 C -0.101 4.101 23 C -0.137 4.137 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.154 0.846 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.382 -3.832 6.679 9.395 hybrid contribution 0.913 -0.764 -1.612 2.003 sum 6.295 -4.596 5.068 9.297 Atomic orbital electron populations 1.22206 0.96966 1.01393 1.02390 1.20961 0.93650 0.82831 1.02085 1.57711 1.78676 1.22960 1.24108 1.19223 0.97250 0.92381 0.79221 1.21586 1.02523 1.28234 1.06171 0.91390 1.24953 0.97036 0.94792 0.96795 1.69915 1.35794 1.29124 1.16881 0.86947 0.84366 0.78327 0.79811 1.20410 1.21057 1.18544 1.01794 0.72612 0.73777 0.72590 1.93545 1.70592 1.76296 1.58165 1.93577 1.85892 1.31051 1.85667 1.56035 1.25385 1.68242 1.38193 1.21490 0.88959 0.91736 0.95946 1.22090 0.97166 0.98348 0.99077 1.22581 0.90869 0.96123 1.00451 1.69455 1.04659 1.01860 1.33577 1.91168 1.42709 1.52137 1.38994 1.23086 1.00718 0.97420 0.88854 1.23202 0.98726 0.92089 0.99644 1.21736 0.93999 0.98972 1.00062 0.92360 0.92646 0.92095 0.90259 0.91897 0.94273 0.93026 0.92397 0.76314 0.84557 0.91031 0.89181 0.89339 0.92924 0.93222 0.93679 0.89309 0.90954 0.89583 0.89973 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.13 2.16 6.06 -4.05 -0.02 2.14 16 3 N -0.99 -19.20 2.82 -115.67 -0.33 -19.52 16 4 C 0.24 5.56 5.31 -5.20 -0.03 5.53 16 5 C -0.55 -12.78 6.91 -34.44 -0.24 -13.02 16 6 H 0.07 1.49 6.95 -52.49 -0.36 1.13 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.88 -23.54 13.29 55.43 0.74 -22.80 16 9 Si 0.88 18.52 29.34 -169.99 -4.99 13.53 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 H -0.26 -4.91 4.34 56.52 0.25 -4.67 16 13 S 2.78 52.84 6.01 -107.50 -0.65 52.20 16 14 O -1.00 -19.82 17.11 -57.17 -0.98 -20.80 16 15 O -0.98 -21.74 16.04 -57.17 -0.92 -22.66 16 16 N -1.12 -17.52 5.54 -4.78 -0.03 -17.55 16 17 C 0.13 2.07 2.45 -67.80 -0.17 1.90 16 18 C -0.13 -2.00 5.70 -26.65 -0.15 -2.15 16 19 C 0.03 0.46 5.99 -3.84 -0.02 0.44 16 20 N -0.33 -5.22 5.71 -113.82 -0.65 -5.87 16 21 O -0.25 -3.97 11.64 -13.92 -0.16 -4.14 16 22 C 0.00 -0.03 9.98 101.05 1.01 0.97 16 23 C -0.01 -0.12 4.47 -3.83 -0.02 -0.14 16 24 C -0.11 -1.55 5.63 -26.64 -0.15 -1.70 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 29 H 0.06 0.93 7.61 -51.93 -0.40 0.53 16 30 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 33 H 0.40 5.15 8.84 -34.47 -0.30 4.84 16 34 H 0.14 2.69 4.27 -51.93 -0.22 2.46 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.52 7.72 -51.93 -0.40 1.12 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.60 6.61 -51.93 -0.34 0.26 16 40 H 0.04 0.66 6.87 -51.93 -0.36 0.31 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.25 4.30 -51.93 -0.22 1.03 16 43 H 0.09 1.16 6.57 -51.93 -0.34 0.82 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -29.23 358.71 -9.31 -38.54 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.25 Total: 10.31 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 0.49 Total: -6.64 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -0.27 Total: -65.74 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -2.06 Total: -47.60 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.99 Total: 13.53 kcal Atomic # 16 Polarization: 52.84 SS G_CDS: -0.65 Total: 52.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.23 -9.31 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363927765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.063 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds