Wall clock time and date at job start Tue Mar 31 2020 12:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47489 * 2 1 4 4 C 1.46498 * 120.00102 * 275.00246 * 3 2 1 5 5 C 1.50699 * 109.47135 * 274.99746 * 4 3 2 6 6 H 1.07999 * 119.99976 * 0.02562 * 5 4 3 7 7 C 1.37887 * 119.99963 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99723 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99930 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47166 * 90.00283 * 9 7 5 11 11 H 1.48500 * 109.47208 * 210.00194 * 9 7 5 12 12 H 1.48503 * 109.47217 * 330.00374 * 9 7 5 13 13 S 1.65599 * 119.99993 * 95.00361 * 3 2 1 14 14 O 1.42101 * 106.40388 * 336.45991 * 13 3 2 15 15 O 1.42104 * 106.40216 * 203.54005 * 13 3 2 16 16 N 1.65599 * 107.22257 * 90.00001 * 13 3 2 17 17 C 1.46500 * 119.99753 * 64.99813 * 16 13 3 18 18 C 1.53123 * 109.57501 * 95.30162 * 17 16 13 19 19 C 1.53034 * 109.27992 * 177.60191 * 18 17 16 20 20 N 1.46847 * 109.51345 * 300.80438 * 19 18 17 21 21 O 1.46298 * 110.99811 * 185.84709 * 20 19 18 22 22 C 1.42903 * 113.99843 * 239.99650 * 21 20 19 23 23 C 1.46843 * 111.20124 * 61.74903 * 20 19 18 24 24 C 1.53042 * 109.52278 * 298.25596 * 23 20 19 25 25 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46864 * 299.99846 * 1 2 3 27 27 H 1.08994 * 109.47205 * 59.99708 * 1 2 3 28 28 H 1.09000 * 109.46864 * 240.00154 * 2 1 3 29 29 H 1.09004 * 109.47171 * 120.00298 * 2 1 3 30 30 H 1.09002 * 109.47213 * 34.99992 * 4 3 2 31 31 H 1.08999 * 109.47314 * 154.99965 * 4 3 2 32 32 H 0.96998 * 120.00005 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99982 * 245.00688 * 16 13 3 34 34 H 1.09003 * 109.52476 * 335.13268 * 17 16 13 35 35 H 1.08997 * 109.51083 * 57.64785 * 18 17 16 36 36 H 1.08998 * 109.48980 * 297.53716 * 18 17 16 37 37 H 1.09002 * 109.46271 * 180.79158 * 19 18 17 38 38 H 1.08994 * 109.46242 * 60.81457 * 19 18 17 39 39 H 1.09005 * 109.47009 * 300.00090 * 22 21 20 40 40 H 1.08992 * 109.46920 * 60.00045 * 22 21 20 41 41 H 1.09007 * 109.46914 * 180.02562 * 22 21 20 42 42 H 1.08993 * 109.46313 * 58.27251 * 23 20 19 43 43 H 1.09000 * 109.46480 * 178.25361 * 23 20 19 44 44 H 1.08997 * 109.50758 * 179.11703 * 24 23 20 45 45 H 1.08998 * 109.50897 * 299.20258 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1720 1.1109 -1.3840 7 6 3.8525 2.3605 -3.0849 8 7 3.0276 3.1854 -3.6919 9 14 5.5088 1.9635 -3.8519 10 1 5.3728 0.7802 -4.7388 11 1 5.9778 3.1267 -4.6469 12 1 6.4927 1.6678 -2.7796 13 16 2.4123 2.1200 1.4287 14 8 1.6870 1.4414 2.4448 15 8 2.3059 3.5185 1.1998 16 7 4.0145 1.8135 1.7137 17 6 5.0352 2.3522 0.8113 18 6 5.5721 3.6715 1.3733 19 6 6.6792 4.1977 0.4571 20 7 7.7587 3.2058 0.3726 21 8 8.8956 3.7314 -0.3834 22 6 9.2189 2.9720 -1.5500 23 6 7.2779 1.9457 -0.2082 24 6 6.1884 1.3524 0.6881 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3617 1.8097 -1.9453 31 1 2.0923 3.1802 -1.0756 32 1 3.2794 3.5880 -4.5378 33 1 4.2772 1.2772 2.4781 34 1 4.5973 2.5261 -0.1716 35 1 5.9749 3.5046 2.3722 36 1 4.7638 4.4011 1.4235 37 1 7.0732 5.1299 0.8619 38 1 6.2723 4.3773 -0.5380 39 1 9.4690 1.9511 -1.2611 40 1 8.3625 2.9593 -2.2241 41 1 10.0720 3.4259 -2.0542 42 1 6.8684 2.1360 -1.2001 43 1 8.1067 1.2422 -0.2862 44 1 5.8207 0.4251 0.2487 45 1 6.6010 1.1484 1.6761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363927765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:16 Heat of formation + Delta-G solvation = -96.419692 kcal Electronic energy + Delta-G solvation = -28198.311293 eV Core-core repulsion = 24378.658058 eV Total energy + Delta-G solvation = -3819.653235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.24888 -38.30156 -37.76856 -37.45562 -36.84826 -34.73386 -34.60475 -32.06947 -31.52984 -30.27838 -28.50024 -27.64297 -24.95092 -24.15126 -23.68259 -23.29426 -21.08589 -20.23031 -18.75935 -18.62335 -18.54503 -18.16715 -17.31006 -17.00088 -16.54154 -16.20925 -16.07043 -15.44893 -15.19731 -15.06611 -14.77652 -14.65951 -14.39995 -14.19187 -13.82646 -13.72889 -13.57103 -13.35782 -13.33886 -13.13910 -13.02545 -12.86603 -12.73333 -12.63637 -12.42810 -12.29748 -12.26805 -12.07893 -11.92727 -11.73381 -11.56734 -11.39163 -11.32424 -10.57404 -10.35946 -9.77922 -9.59104 -8.18018 -6.29695 -0.25352 1.33591 1.38797 1.46995 1.65927 2.02806 2.38257 2.64531 3.12886 3.34204 3.48692 3.74725 3.87246 3.98080 4.05581 4.13787 4.26163 4.32040 4.34556 4.41571 4.45583 4.52016 4.55907 4.69163 4.72191 4.73748 4.78281 4.83291 4.91592 5.00477 5.04798 5.14303 5.17231 5.29441 5.41072 5.45174 5.55420 5.62032 5.76557 5.92400 6.10244 6.11803 6.30071 6.81575 7.38189 8.89536 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.006667 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.574403 B = 4198.968452 C = 5583.286794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.257 3.743 5 C -0.533 4.533 6 H 0.086 0.914 7 C 0.016 3.984 8 N -0.926 5.926 9 Si 0.929 3.071 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.224 1.224 13 S 2.797 3.203 14 O -1.007 7.007 15 O -1.016 7.016 16 N -1.104 6.104 17 C 0.123 3.877 18 C -0.124 4.124 19 C 0.031 3.969 20 N -0.327 5.327 21 O -0.262 6.262 22 C -0.008 4.008 23 C -0.009 4.009 24 C -0.102 4.102 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.019 0.981 31 H 0.016 0.984 32 H 0.262 0.738 33 H 0.423 0.577 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.000 -6.981 7.340 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.133 3.867 5 C -0.572 4.572 6 H 0.104 0.896 7 C -0.184 4.184 8 N -0.565 5.565 9 Si 0.756 3.244 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.148 1.148 13 S 2.805 3.195 14 O -0.991 6.991 15 O -0.999 6.999 16 N -0.865 5.865 17 C 0.016 3.984 18 C -0.163 4.163 19 C -0.098 4.098 20 N -0.094 5.094 21 O -0.267 6.267 22 C -0.105 4.105 23 C -0.138 4.138 24 C -0.142 4.142 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.259 0.741 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.130 0.870 42 H 0.067 0.933 43 H 0.128 0.872 44 H 0.110 0.890 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.595 -6.173 8.115 12.714 hybrid contribution 0.207 -0.048 -1.990 2.001 sum 7.802 -6.221 6.125 11.708 Atomic orbital electron populations 1.22204 0.96238 1.03188 1.01212 1.21251 0.94419 0.81245 1.03440 1.57610 1.79352 1.24058 1.22662 1.18776 0.96814 0.90809 0.80326 1.21844 1.02449 1.27298 1.05588 0.89628 1.25737 1.00277 0.94758 0.97596 1.70067 1.37980 1.31085 1.17400 0.86095 0.81378 0.77320 0.79636 1.20385 1.22584 1.14802 1.01236 0.73236 0.72845 0.72177 1.93530 1.71331 1.76141 1.58117 1.93536 1.86693 1.33607 1.86095 1.55600 1.23845 1.68319 1.38756 1.21406 0.89547 0.93054 0.94414 1.22036 0.96588 0.97529 1.00185 1.22548 0.91125 0.96980 0.99149 1.69424 1.04187 1.01839 1.33971 1.91139 1.42626 1.53027 1.39918 1.23275 1.00902 0.98520 0.87827 1.23278 0.99686 0.92313 0.98503 1.21739 0.92652 0.98247 1.01517 0.89100 0.93586 0.93502 0.89876 0.89436 0.96268 0.96559 0.92870 0.74126 0.87857 0.88712 0.91096 0.88377 0.95517 0.91430 0.95253 0.86950 0.93257 0.87174 0.88975 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.98 10.24 71.98 0.74 -4.24 16 2 C 0.12 3.82 6.06 86.38 0.52 4.34 16 3 N -1.00 -38.32 2.82 -519.87 -1.47 -39.79 16 4 C 0.26 12.18 5.31 85.63 0.45 12.63 16 5 C -0.53 -25.08 6.91 25.60 0.18 -24.90 16 6 H 0.09 3.64 6.95 -2.91 -0.02 3.62 16 7 C 0.02 0.82 5.46 84.66 0.46 1.28 16 8 N -0.93 -51.54 13.29 21.45 0.28 -51.25 16 9 Si 0.93 37.96 29.34 68.60 2.01 39.98 16 10 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.30 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.22 -7.79 4.34 99.48 0.43 -7.35 16 13 S 2.80 104.68 6.01 -56.49 -0.34 104.34 16 14 O -1.01 -38.36 17.11 -128.00 -2.19 -40.55 16 15 O -1.02 -46.29 16.04 -128.00 -2.05 -48.34 16 16 N -1.10 -32.22 5.54 -169.04 -0.94 -33.15 16 17 C 0.12 3.84 2.45 45.07 0.11 3.95 16 18 C -0.12 -3.75 5.70 30.65 0.17 -3.58 16 19 C 0.03 0.98 5.99 86.32 0.52 1.49 16 20 N -0.33 -9.60 5.71 -514.02 -2.94 -12.53 16 21 O -0.26 -7.89 11.64 -50.15 -0.58 -8.48 16 22 C -0.01 -0.18 9.98 113.37 1.13 0.95 16 23 C -0.01 -0.25 4.47 86.33 0.39 0.14 16 24 C -0.10 -2.55 5.63 30.65 0.17 -2.38 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 29 H 0.09 2.32 7.61 -2.38 -0.02 2.30 16 30 H 0.02 0.98 8.11 -2.39 -0.02 0.96 16 31 H 0.02 0.89 6.91 -2.39 -0.02 0.87 16 32 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.42 9.34 8.84 -96.75 -0.86 8.48 16 34 H 0.10 4.02 4.27 -2.39 -0.01 4.01 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.07 2.42 7.72 -2.39 -0.02 2.40 16 37 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.37 6.61 -2.38 -0.02 1.36 16 40 H 0.03 0.79 6.87 -2.39 -0.02 0.78 16 41 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.05 1.58 4.30 -2.39 -0.01 1.57 16 43 H 0.11 2.47 6.57 -2.39 -0.02 2.45 16 44 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -64.83 358.71 -3.50 -68.33 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.14 Total: 31.76 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 4.85 Total: -10.31 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -5.05 Total: -136.73 kcal Atomic # 8 Polarization: -92.55 SS G_CDS: -4.83 Total: -97.37 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.01 Total: 39.98 kcal Atomic # 16 Polarization: 104.68 SS G_CDS: -0.34 Total: 104.34 kcal Total: -64.83 -3.50 -68.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363927765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.090 kcal (2) G-P(sol) polarization free energy of solvation -64.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds