Wall clock time and date at job start Tue Mar 31 2020 13:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46775 * 2 1 4 4 C 1.35746 * 117.00154 * 180.02562 * 3 2 1 5 5 N 1.32155 * 119.72185 * 359.97438 * 4 3 2 6 6 C 1.31997 * 121.71533 * 180.02562 * 5 4 3 7 7 C 1.38071 * 120.97510 * 359.97438 * 6 5 4 8 8 C 1.38746 * 119.34224 * 0.02562 * 7 6 5 9 9 C 1.38951 * 118.42646 * 359.97438 * 8 7 6 10 10 N 1.40168 * 120.50452 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99948 * 24.48058 * 10 9 8 12 12 O 1.21588 * 119.99973 * 5.74602 * 11 10 9 13 13 N 1.34777 * 119.99653 * 185.74694 * 11 10 9 14 14 C 1.47025 * 125.65011 * 0.02562 * 13 11 10 15 15 C 1.54323 * 107.27083 * 181.01948 * 14 13 11 16 16 C 1.55166 * 102.94246 * 22.19792 * 15 14 13 17 17 O 1.42898 * 111.00398 * 82.56835 * 16 15 14 18 18 C 1.50691 * 111.00392 * 206.38296 * 16 15 14 19 19 H 1.07999 * 120.00181 * 124.89387 * 18 16 15 20 20 C 1.37876 * 120.00378 * 304.89190 * 18 16 15 21 21 N 1.31515 * 120.00373 * 174.84928 * 20 18 16 22 22 Si 1.86803 * 119.99716 * 354.85665 * 20 18 16 23 23 H 1.48495 * 109.47621 * 94.87209 * 22 20 18 24 24 H 1.48498 * 109.46858 * 214.87265 * 22 20 18 25 25 H 1.48497 * 109.46830 * 334.86717 * 22 20 18 26 26 C 1.47422 * 125.64674 * 179.71588 * 13 11 10 27 27 H 1.08999 * 109.47511 * 60.00647 * 1 2 3 28 28 H 1.09005 * 109.46673 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47340 * 299.99740 * 1 2 3 30 30 H 1.08992 * 109.46952 * 240.00135 * 2 1 3 31 31 H 1.09000 * 109.46996 * 119.99245 * 2 1 3 32 32 H 1.08001 * 119.51292 * 180.02562 * 6 5 4 33 33 H 1.07994 * 120.32864 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.79065 * 180.02562 * 8 7 6 35 35 H 0.97001 * 119.99837 * 204.47830 * 10 9 8 36 36 H 1.08998 * 109.88403 * 300.44196 * 14 13 11 37 37 H 1.09005 * 109.87884 * 61.61064 * 14 13 11 38 38 H 1.09002 * 110.71828 * 140.55755 * 15 14 13 39 39 H 1.08999 * 110.72690 * 263.65691 * 15 14 13 40 40 H 0.96705 * 113.99578 * 180.02562 * 17 16 15 41 41 H 0.97004 * 119.99955 * 180.02562 * 21 20 18 42 42 H 1.09003 * 110.36791 * 274.74747 * 26 13 11 43 43 H 1.09007 * 110.36657 * 37.06948 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5253 -0.0005 5 7 4.1521 0.4734 -0.0005 6 6 5.4659 0.6009 -0.0005 7 6 6.0589 1.8477 -0.0011 8 6 5.2586 2.9812 -0.0011 9 6 3.8789 2.8167 -0.0011 10 7 3.0295 3.9317 -0.0017 11 6 3.4661 5.1113 -0.4859 12 8 4.5574 5.1839 -1.0170 13 7 2.6930 6.2103 -0.3812 14 6 1.3592 6.2643 0.2349 15 6 0.8513 7.7154 0.1016 16 6 1.6862 8.2683 -1.0836 17 8 1.1082 7.8942 -2.3358 18 6 1.8364 9.7646 -0.9869 19 1 2.8202 10.2102 -0.9934 20 6 0.7179 10.5650 -0.8902 21 7 0.8501 11.8602 -0.7040 22 14 -0.9854 9.8096 -1.0234 23 1 -1.5066 9.5207 0.3367 24 1 -1.8959 10.7602 -1.7108 25 1 -0.9076 8.5477 -1.8022 26 6 3.0475 7.5588 -0.8599 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 6.0862 -0.2833 -0.0009 33 1 7.1349 1.9399 -0.0015 34 1 5.6977 3.9679 -0.0020 35 1 2.1274 3.8543 0.3464 36 1 0.6830 5.5856 -0.2849 37 1 1.4259 5.9902 1.2878 38 1 -0.2125 7.7314 -0.1354 39 1 1.0504 8.2790 1.0131 40 1 1.5958 8.2169 -3.1061 41 1 0.0632 12.4232 -0.6356 42 1 3.6339 8.0865 -0.1076 43 1 3.6004 7.4955 -1.7972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364083942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:18 Heat of formation + Delta-G solvation = -56.101652 kcal Electronic energy + Delta-G solvation = -27444.778523 eV Core-core repulsion = 23491.429658 eV Total energy + Delta-G solvation = -3953.348865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14667 -39.88190 -38.23799 -37.74108 -34.96586 -34.63317 -32.52103 -32.27136 -31.60810 -30.43963 -29.19889 -28.30123 -25.44826 -24.53425 -23.23129 -22.65121 -22.34353 -20.07206 -19.78600 -18.82114 -18.31793 -17.39486 -17.13127 -16.60821 -16.39423 -15.62199 -15.29964 -15.06215 -14.88548 -14.53883 -14.30057 -14.07619 -13.74468 -13.52783 -13.28315 -12.95880 -12.81701 -12.62186 -12.56444 -12.48972 -12.19058 -11.74993 -11.71874 -11.40283 -11.16172 -11.05353 -10.91032 -10.65803 -10.46049 -10.23675 -10.07506 -9.69224 -9.31074 -9.05801 -8.76651 -8.70142 -8.26924 -7.84637 -6.28707 -4.41098 1.01828 1.20835 2.62392 2.80555 3.21902 3.22293 3.36467 3.55235 3.76763 3.96424 4.26275 4.33995 4.71273 4.77908 4.84874 4.93587 4.98491 5.03028 5.10002 5.16764 5.25769 5.32706 5.46655 5.49513 5.59208 5.62354 5.75003 5.78333 5.85466 6.03275 6.05581 6.22962 6.37487 6.46348 6.52802 6.56006 6.58371 7.02997 7.12176 7.14115 7.40336 7.70039 8.02701 8.13861 8.61997 8.68921 8.85581 9.33685 10.81609 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019123 B = 0.003329 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.832052 B = 8408.822960 C = 9573.714098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.071 3.929 3 O -0.311 6.311 4 C 0.289 3.711 5 N -0.520 5.520 6 C 0.103 3.897 7 C -0.183 4.183 8 C -0.063 4.063 9 C 0.118 3.882 10 N -0.673 5.673 11 C 0.719 3.281 12 O -0.582 6.582 13 N -0.619 5.619 14 C 0.100 3.900 15 C -0.124 4.124 16 C 0.217 3.783 17 O -0.573 6.573 18 C -0.552 4.552 19 H 0.080 0.920 20 C 0.090 3.910 21 N -0.884 5.884 22 Si 0.870 3.130 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.226 1.226 26 C 0.111 3.889 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.412 0.588 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.367 0.633 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 -22.016 3.832 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.005 4.005 3 O -0.219 6.219 4 C 0.106 3.894 5 N -0.244 5.244 6 C -0.053 4.053 7 C -0.204 4.204 8 C -0.091 4.091 9 C 0.019 3.981 10 N -0.320 5.320 11 C 0.422 3.578 12 O -0.461 6.461 13 N -0.354 5.354 14 C -0.023 4.023 15 C -0.162 4.162 16 C 0.176 3.824 17 O -0.379 6.379 18 C -0.590 4.590 19 H 0.098 0.902 20 C -0.116 4.116 21 N -0.520 5.520 22 Si 0.698 3.302 23 H -0.211 1.211 24 H -0.225 1.225 25 H -0.148 1.148 26 C -0.011 4.011 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.175 0.825 33 H 0.157 0.843 34 H 0.183 0.817 35 H 0.248 0.752 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.214 0.786 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.354 -22.692 3.862 23.138 hybrid contribution -0.607 0.626 -0.143 0.883 sum 1.747 -22.065 3.719 22.445 Atomic orbital electron populations 1.21834 0.93056 1.02834 1.03465 1.22556 0.94604 0.80953 1.02350 1.86181 1.16552 1.30796 1.88378 1.19408 0.84431 0.88305 0.97234 1.67288 1.06768 1.31529 1.18784 1.22274 0.88953 0.97462 0.96608 1.21942 1.01455 0.92514 1.04448 1.21853 0.90459 1.01629 0.95146 1.17583 0.90760 0.84017 1.05755 1.42483 1.17055 1.07505 1.64995 1.15391 0.83833 0.79325 0.79262 1.90844 1.21098 1.84329 1.49837 1.47730 1.18224 1.08361 1.61085 1.22088 0.83712 0.99936 0.96567 1.22937 1.00356 0.92629 1.00275 1.20161 0.86750 0.93385 0.82096 1.86468 1.55794 1.79755 1.15909 1.21105 0.95611 0.87971 1.54263 0.90192 1.24952 0.99724 0.94509 0.92427 1.69926 1.30740 1.04623 1.46715 0.87151 0.83149 0.81190 0.78704 1.21090 1.22459 1.14840 1.23030 0.99801 0.78777 0.99497 0.91549 0.90357 0.91617 0.91717 0.91742 0.82456 0.84294 0.81706 0.75200 0.91992 0.92185 0.90646 0.89058 0.78632 0.92262 0.90711 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.07 0.68 6.03 37.16 0.22 0.91 16 3 O -0.31 -3.91 9.55 -18.95 -0.18 -4.09 16 4 C 0.29 3.92 7.51 -16.95 -0.13 3.80 16 5 N -0.52 -6.49 9.22 -13.18 -0.12 -6.62 16 6 C 0.10 1.07 11.17 -17.54 -0.20 0.87 16 7 C -0.18 -1.96 10.10 -39.45 -0.40 -2.36 16 8 C -0.06 -0.86 8.83 -39.13 -0.35 -1.21 16 9 C 0.12 1.72 6.47 -83.32 -0.54 1.18 16 10 N -0.67 -10.07 5.25 -14.00 -0.07 -10.14 16 11 C 0.72 12.83 8.31 -86.92 -0.72 12.11 16 12 O -0.58 -11.73 13.80 5.29 0.07 -11.66 16 13 N -0.62 -11.09 3.32 -176.09 -0.59 -11.68 16 14 C 0.10 1.61 6.17 -3.06 -0.02 1.59 16 15 C -0.12 -2.41 4.61 -24.89 -0.11 -2.52 16 16 C 0.22 4.66 0.71 -89.50 -0.06 4.59 16 17 O -0.57 -12.23 10.72 -35.23 -0.38 -12.61 16 18 C -0.55 -14.15 8.86 -34.45 -0.31 -14.46 16 19 H 0.08 2.23 8.04 -52.49 -0.42 1.81 16 20 C 0.09 2.40 5.43 -17.82 -0.10 2.30 16 21 N -0.88 -25.45 13.96 55.43 0.77 -24.68 16 22 Si 0.87 20.33 24.09 -169.99 -4.10 16.24 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.23 -5.15 5.23 56.52 0.30 -4.86 16 26 C 0.11 2.21 6.10 -2.41 -0.01 2.19 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.17 2.50 5.88 -52.49 -0.31 2.20 16 35 H 0.41 5.43 7.34 -40.82 -0.30 5.13 16 36 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.49 4.82 -51.93 -0.25 1.24 16 39 H 0.09 1.76 8.04 -51.93 -0.42 1.35 16 40 H 0.37 6.94 9.06 45.56 0.41 7.35 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.07 1.50 8.04 -51.93 -0.42 1.09 16 43 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -31.68 350.52 -6.80 -38.48 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.16 Total: 13.24 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.34 Total: 8.22 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.01 Total: -53.11 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.49 Total: -28.36 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.10 Total: 16.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.68 -6.80 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364083942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.617 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds