Wall clock time and date at job start Tue Mar 31 2020 13:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46775 * 2 1 4 4 C 1.35746 * 117.00154 * 180.02562 * 3 2 1 5 5 N 1.32155 * 119.72185 * 359.97438 * 4 3 2 6 6 C 1.31997 * 121.71533 * 180.02562 * 5 4 3 7 7 C 1.38071 * 120.97510 * 359.97438 * 6 5 4 8 8 C 1.38746 * 119.34224 * 0.02562 * 7 6 5 9 9 C 1.38951 * 118.42646 * 359.97438 * 8 7 6 10 10 N 1.40168 * 120.50452 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99948 * 24.48058 * 10 9 8 12 12 O 1.21588 * 119.99973 * 5.74602 * 11 10 9 13 13 N 1.34777 * 119.99653 * 185.74694 * 11 10 9 14 14 C 1.47025 * 125.65011 * 0.02562 * 13 11 10 15 15 C 1.54323 * 107.27083 * 181.01948 * 14 13 11 16 16 C 1.55166 * 102.94246 * 22.19792 * 15 14 13 17 17 O 1.42898 * 111.00398 * 82.56835 * 16 15 14 18 18 C 1.50691 * 111.00392 * 206.38296 * 16 15 14 19 19 H 1.07999 * 120.00181 * 124.89387 * 18 16 15 20 20 C 1.37876 * 120.00378 * 304.89190 * 18 16 15 21 21 N 1.31515 * 120.00373 * 174.84928 * 20 18 16 22 22 Si 1.86803 * 119.99716 * 354.85665 * 20 18 16 23 23 H 1.48495 * 109.47621 * 94.87209 * 22 20 18 24 24 H 1.48498 * 109.46858 * 214.87265 * 22 20 18 25 25 H 1.48497 * 109.46830 * 334.86717 * 22 20 18 26 26 C 1.47422 * 125.64674 * 179.71588 * 13 11 10 27 27 H 1.08999 * 109.47511 * 60.00647 * 1 2 3 28 28 H 1.09005 * 109.46673 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47340 * 299.99740 * 1 2 3 30 30 H 1.08992 * 109.46952 * 240.00135 * 2 1 3 31 31 H 1.09000 * 109.46996 * 119.99245 * 2 1 3 32 32 H 1.08001 * 119.51292 * 180.02562 * 6 5 4 33 33 H 1.07994 * 120.32864 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.79065 * 180.02562 * 8 7 6 35 35 H 0.97001 * 119.99837 * 204.47830 * 10 9 8 36 36 H 1.08998 * 109.88403 * 300.44196 * 14 13 11 37 37 H 1.09005 * 109.87884 * 61.61064 * 14 13 11 38 38 H 1.09002 * 110.71828 * 140.55755 * 15 14 13 39 39 H 1.08999 * 110.72690 * 263.65691 * 15 14 13 40 40 H 0.96705 * 113.99578 * 180.02562 * 17 16 15 41 41 H 0.97004 * 119.99955 * 180.02562 * 21 20 18 42 42 H 1.09003 * 110.36791 * 274.74747 * 26 13 11 43 43 H 1.09007 * 110.36657 * 37.06948 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5253 -0.0005 5 7 4.1521 0.4734 -0.0005 6 6 5.4659 0.6009 -0.0005 7 6 6.0589 1.8477 -0.0011 8 6 5.2586 2.9812 -0.0011 9 6 3.8789 2.8167 -0.0011 10 7 3.0295 3.9317 -0.0017 11 6 3.4661 5.1113 -0.4859 12 8 4.5574 5.1839 -1.0170 13 7 2.6930 6.2103 -0.3812 14 6 1.3592 6.2643 0.2349 15 6 0.8513 7.7154 0.1016 16 6 1.6862 8.2683 -1.0836 17 8 1.1082 7.8942 -2.3358 18 6 1.8364 9.7646 -0.9869 19 1 2.8202 10.2102 -0.9934 20 6 0.7179 10.5650 -0.8902 21 7 0.8501 11.8602 -0.7040 22 14 -0.9854 9.8096 -1.0234 23 1 -1.5066 9.5207 0.3367 24 1 -1.8959 10.7602 -1.7108 25 1 -0.9076 8.5477 -1.8022 26 6 3.0475 7.5588 -0.8599 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 6.0862 -0.2833 -0.0009 33 1 7.1349 1.9399 -0.0015 34 1 5.6977 3.9679 -0.0020 35 1 2.1274 3.8543 0.3464 36 1 0.6830 5.5856 -0.2849 37 1 1.4259 5.9902 1.2878 38 1 -0.2125 7.7314 -0.1354 39 1 1.0504 8.2790 1.0131 40 1 1.5958 8.2169 -3.1061 41 1 0.0632 12.4232 -0.6356 42 1 3.6339 8.0865 -0.1076 43 1 3.6004 7.4955 -1.7972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364083942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:17 Heat of formation + Delta-G solvation = -81.838183 kcal Electronic energy + Delta-G solvation = -27445.894543 eV Core-core repulsion = 23491.429658 eV Total energy + Delta-G solvation = -3954.464885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22803 -41.12548 -39.51692 -38.86127 -36.22885 -36.17516 -34.53515 -33.08925 -32.65835 -31.77544 -30.32461 -29.81867 -27.15146 -25.48978 -24.47655 -23.77490 -23.26808 -21.68573 -21.18562 -19.98387 -19.44468 -19.06059 -18.37133 -17.63085 -17.31095 -17.03386 -16.86207 -16.49776 -16.24217 -15.91732 -15.41141 -15.14070 -14.92629 -14.88479 -14.76346 -14.32086 -14.21906 -13.88863 -13.49469 -13.33655 -13.31528 -13.22792 -13.11558 -12.80495 -12.45767 -12.39055 -12.27992 -12.15477 -11.81609 -11.69136 -11.49884 -10.92598 -10.81248 -10.72882 -10.40919 -10.32121 -9.68566 -8.91242 -8.36768 -6.52453 0.07199 0.24747 1.32678 1.37337 1.47106 1.69542 1.91553 1.95374 2.38244 2.73278 2.80734 2.98820 3.41307 3.52819 3.71354 3.83212 3.95647 4.08599 4.11495 4.14443 4.15786 4.22870 4.41405 4.44600 4.48478 4.52860 4.76958 4.82121 4.88105 4.92775 4.97085 5.02780 5.07082 5.17321 5.24554 5.26112 5.37262 5.50234 5.58230 5.87683 6.07422 6.23225 6.59528 6.72894 6.79436 7.13152 7.26975 7.29141 8.77383 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019123 B = 0.003329 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.832052 B = 8408.822960 C = 9573.714098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.322 6.322 4 C 0.284 3.716 5 N -0.528 5.528 6 C 0.112 3.888 7 C -0.177 4.177 8 C -0.077 4.077 9 C 0.088 3.912 10 N -0.661 5.661 11 C 0.718 3.282 12 O -0.612 6.612 13 N -0.621 5.621 14 C 0.105 3.895 15 C -0.127 4.127 16 C 0.216 3.784 17 O -0.574 6.574 18 C -0.550 4.550 19 H 0.041 0.959 20 C 0.039 3.961 21 N -0.934 5.934 22 Si 0.933 3.067 23 H -0.268 1.268 24 H -0.308 1.308 25 H -0.214 1.214 26 C 0.120 3.880 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.198 0.802 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.420 0.580 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.375 0.625 41 H 0.269 0.731 42 H 0.065 0.935 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -25.563 4.418 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.008 4.008 3 O -0.230 6.230 4 C 0.102 3.898 5 N -0.252 5.252 6 C -0.044 4.044 7 C -0.197 4.197 8 C -0.105 4.105 9 C -0.010 4.010 10 N -0.309 5.309 11 C 0.421 3.579 12 O -0.492 6.492 13 N -0.357 5.357 14 C -0.017 4.017 15 C -0.164 4.164 16 C 0.175 3.825 17 O -0.382 6.382 18 C -0.588 4.588 19 H 0.059 0.941 20 C -0.162 4.162 21 N -0.572 5.572 22 Si 0.759 3.241 23 H -0.194 1.194 24 H -0.236 1.236 25 H -0.136 1.136 26 C -0.003 4.003 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.215 0.785 33 H 0.187 0.813 34 H 0.163 0.837 35 H 0.258 0.742 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.224 0.776 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.591 -26.293 4.466 26.717 hybrid contribution -0.202 1.654 -0.350 1.702 sum 1.389 -24.639 4.116 25.019 Atomic orbital electron populations 1.21848 0.91354 1.04240 1.03203 1.22768 0.95904 0.79784 1.02391 1.86169 1.16130 1.32464 1.88224 1.19462 0.85057 0.88123 0.97170 1.67409 1.07674 1.31040 1.19058 1.22984 0.88586 0.98718 0.94068 1.22265 1.02767 0.91642 1.03023 1.21859 0.90771 1.01903 0.95965 1.17772 0.91081 0.84194 1.07982 1.42240 1.17472 1.06698 1.64449 1.15451 0.83399 0.79869 0.79173 1.90826 1.22373 1.84904 1.51146 1.47620 1.19017 1.07611 1.61429 1.22166 0.82776 0.97999 0.98737 1.22894 1.00078 0.94660 0.98813 1.20023 0.88475 0.90966 0.83031 1.86421 1.56063 1.79562 1.16132 1.21317 0.93874 0.90583 1.53018 0.94052 1.25742 1.03593 0.94647 0.92172 1.70057 1.31812 1.06287 1.49066 0.86179 0.78252 0.80299 0.79412 1.19357 1.23615 1.13627 1.22692 0.98681 0.80006 0.98920 0.92142 0.88129 0.91475 0.91981 0.91328 0.78488 0.81312 0.83673 0.74231 0.90192 0.88913 0.90435 0.89369 0.77618 0.92223 0.91703 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.07 1.15 6.03 71.98 0.43 1.58 16 3 O -0.32 -7.56 9.55 -90.71 -0.87 -8.43 16 4 C 0.28 7.26 7.51 84.94 0.64 7.90 16 5 N -0.53 -11.91 9.22 -308.48 -2.84 -14.75 16 6 C 0.11 1.96 11.17 84.63 0.95 2.90 16 7 C -0.18 -3.35 10.10 22.35 0.23 -3.12 16 8 C -0.08 -2.05 8.83 22.56 0.20 -1.85 16 9 C 0.09 2.47 6.47 38.28 0.25 2.72 16 10 N -0.66 -19.03 5.25 -316.47 -1.66 -20.69 16 11 C 0.72 25.22 8.31 179.05 1.49 26.71 16 12 O -0.61 -24.87 13.80 -3.99 -0.06 -24.93 16 13 N -0.62 -21.64 3.32 -829.28 -2.76 -24.40 16 14 C 0.11 3.12 6.17 86.73 0.53 3.65 16 15 C -0.13 -4.67 4.61 31.79 0.15 -4.52 16 16 C 0.22 9.20 0.71 -10.07 -0.01 9.19 16 17 O -0.57 -23.82 10.72 -148.98 -1.60 -25.42 16 18 C -0.55 -28.90 8.86 25.60 0.23 -28.68 16 19 H 0.04 2.43 8.04 -2.91 -0.02 2.41 16 20 C 0.04 2.13 5.43 84.65 0.46 2.59 16 21 N -0.93 -55.31 13.96 21.45 0.30 -55.01 16 22 Si 0.93 41.79 24.09 68.60 1.65 43.44 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.31 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.21 -9.10 5.23 99.48 0.52 -8.58 16 26 C 0.12 4.81 6.10 86.93 0.53 5.35 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 31 H 0.07 1.12 8.11 -2.39 -0.02 1.10 16 32 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.15 4.47 5.88 -2.91 -0.02 4.45 16 35 H 0.42 10.31 7.34 -92.71 -0.68 9.63 16 36 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 37 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.08 2.83 4.82 -2.39 -0.01 2.82 16 39 H 0.09 3.28 8.04 -2.39 -0.02 3.26 16 40 H 0.38 14.01 9.06 -74.05 -0.67 13.34 16 41 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 42 H 0.06 2.69 8.04 -2.39 -0.02 2.67 16 43 H 0.06 2.55 8.03 -2.38 -0.02 2.53 16 Total: -1.00 -70.04 350.52 -1.50 -71.54 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.48 Total: 35.36 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 6.81 Total: 23.28 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -6.96 Total: -114.86 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -2.52 Total: -58.77 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.65 Total: 43.44 kcal Total: -70.04 -1.50 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364083942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.294 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds