Wall clock time and date at job start Tue Mar 31 2020 13:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00038 * 2 1 4 4 C 1.52996 * 109.47281 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47047 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46894 * 304.99919 * 5 4 3 7 7 N 1.46501 * 109.46746 * 65.00100 * 5 4 3 8 8 C 1.34778 * 119.99719 * 204.99760 * 7 5 4 9 9 O 1.21589 * 120.00043 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99953 * 180.02562 * 8 7 5 11 11 C 1.39956 * 119.99988 * 174.81966 * 10 8 7 12 12 C 1.39285 * 119.94544 * 146.38713 * 11 10 8 13 13 C 1.38496 * 120.42965 * 179.97438 * 12 11 10 14 14 C 1.37681 * 120.31662 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.88803 * 0.02562 * 14 13 12 16 16 C 1.41402 * 120.20925 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00050 * 151.77417 * 16 15 14 18 18 C 1.39938 * 120.00346 * 331.76268 * 16 15 14 19 19 N 1.30832 * 119.99451 * 349.00445 * 18 16 15 20 20 Si 1.86800 * 120.00071 * 168.99550 * 18 16 15 21 21 H 1.48504 * 109.46855 * 60.00684 * 20 18 16 22 22 H 1.48497 * 109.46746 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47126 * 300.00692 * 20 18 16 24 24 C 1.38230 * 119.94554 * 326.11068 * 11 10 8 25 25 C 1.50694 * 109.46812 * 185.00209 * 5 4 3 26 26 N 1.34776 * 120.00474 * 60.27833 * 25 5 4 27 27 O 1.21280 * 119.99824 * 239.99689 * 25 5 4 28 28 H 1.08994 * 109.47406 * 60.00031 * 1 2 3 29 29 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46831 * 300.00137 * 1 2 3 31 31 H 1.09003 * 109.47039 * 59.99471 * 3 2 1 32 32 H 1.08999 * 109.46569 * 300.00130 * 3 2 1 33 33 H 1.09004 * 109.46716 * 59.99845 * 4 3 2 34 34 H 1.08993 * 109.47412 * 300.00085 * 4 3 2 35 35 H 0.96996 * 120.00360 * 25.00083 * 7 5 4 36 36 H 0.96998 * 119.99888 * 354.82225 * 10 8 7 37 37 H 1.07999 * 119.78936 * 359.97335 * 12 11 10 38 38 H 1.07999 * 119.83912 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.05614 * 180.02562 * 14 13 12 40 40 H 0.97001 * 119.99514 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.16415 * 359.97438 * 24 11 10 42 42 H 0.97001 * 120.00311 * 179.72609 * 26 25 5 43 43 H 0.97006 * 119.99891 * 359.72320 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0000 6 1 3.7673 3.1537 -0.8424 7 7 3.8225 3.2668 1.2513 8 6 3.8019 4.6136 1.2982 9 8 4.0611 5.2607 0.3020 10 7 3.4941 5.2431 2.4495 11 6 3.5780 6.6379 2.5284 12 6 2.6834 7.3440 3.3291 13 6 2.7576 8.7243 3.4150 14 6 3.7180 9.4139 2.7095 15 6 4.6288 8.7138 1.8963 16 6 5.6181 9.4151 1.1692 17 1 6.5550 8.9340 0.9297 18 6 5.3834 10.7325 0.7596 19 7 4.1827 11.2431 0.8555 20 14 6.7844 11.7618 0.0762 21 1 7.3379 11.1031 -1.1342 22 1 6.2783 13.1112 -0.2817 23 1 7.8508 11.8895 1.1017 24 6 4.5522 7.3120 1.8161 25 6 5.6550 2.4657 -0.1232 26 7 6.1980 1.8721 -1.2046 27 8 6.3717 2.9102 0.7483 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8573 0.6436 -0.8891 34 1 3.8567 0.6440 0.8908 35 1 3.6155 2.7506 2.0460 36 1 3.2145 4.7294 3.2233 37 1 1.9268 6.8118 3.8866 38 1 2.0593 9.2622 4.0391 39 1 3.7723 10.4902 2.7799 40 1 4.0200 12.1564 0.5720 41 1 5.2494 6.7650 1.1989 42 1 7.1619 1.8004 -1.2858 43 1 5.6248 1.5166 -1.9018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364125935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:56 Heat of formation + Delta-G solvation = -90.333133 kcal Electronic energy + Delta-G solvation = -26738.160519 eV Core-core repulsion = 22783.327265 eV Total energy + Delta-G solvation = -3954.833254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49032 -39.15098 -38.24639 -37.22928 -35.34882 -34.29374 -33.78802 -32.95865 -31.58249 -29.71736 -28.32582 -27.26260 -25.86548 -25.19164 -22.55457 -22.05786 -20.83455 -20.38598 -20.06788 -18.09987 -17.93377 -17.53831 -17.14630 -16.36313 -16.28226 -15.63981 -15.44881 -15.26556 -14.70903 -14.68337 -14.44964 -14.32544 -13.96238 -13.80701 -13.36884 -12.93405 -12.80489 -12.25055 -12.19073 -12.03895 -11.69627 -11.61845 -11.46648 -11.22359 -11.04440 -10.59899 -10.43776 -10.25299 -10.10645 -10.03735 -9.76394 -9.68364 -9.52614 -9.12941 -8.98012 -8.82776 -7.32063 -6.77832 -6.57540 -4.25346 2.53646 2.68579 2.88623 3.07248 3.14498 3.19052 3.21060 3.29266 3.53042 3.86885 4.05236 4.48001 4.50537 4.55597 4.71183 4.77205 4.90378 4.99272 5.03803 5.15445 5.17433 5.33189 5.47164 5.59899 5.81033 6.29475 6.37366 6.46908 6.68563 6.75104 6.79829 6.87492 7.13212 7.19159 7.21044 7.33445 7.41958 7.77039 7.89839 8.07768 8.19539 8.20168 8.34283 8.49524 8.76437 8.98251 9.06781 9.11512 10.35577 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.003084 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.827110 B = 9077.571598 C =10195.017382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.120 4.120 5 C 0.152 3.848 6 H 0.120 0.880 7 N -0.731 5.731 8 C 0.705 3.295 9 O -0.561 6.561 10 N -0.678 5.678 11 C 0.167 3.833 12 C -0.260 4.260 13 C -0.094 4.094 14 C -0.169 4.169 15 C 0.119 3.881 16 C -0.457 4.457 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.803 5.803 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.204 4.204 25 C 0.506 3.494 26 N -0.856 5.856 27 O -0.521 6.521 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.397 0.603 36 H 0.394 0.606 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.278 0.722 41 H 0.108 0.892 42 H 0.401 0.599 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 -20.620 -2.733 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.158 4.158 5 C 0.042 3.958 6 H 0.137 0.863 7 N -0.388 5.388 8 C 0.405 3.595 9 O -0.436 6.436 10 N -0.324 5.324 11 C 0.075 3.925 12 C -0.282 4.282 13 C -0.113 4.113 14 C -0.189 4.189 15 C 0.116 3.884 16 C -0.487 4.487 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.429 5.429 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.226 4.226 25 C 0.288 3.712 26 N -0.422 5.422 27 O -0.395 6.395 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.231 0.769 36 H 0.227 0.773 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.232 0.768 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.484 -19.609 -3.048 20.345 hybrid contribution 0.187 -0.002 -0.076 0.202 sum -4.296 -19.611 -3.124 20.318 Atomic orbital electron populations 1.22751 0.80635 1.02763 1.00329 1.87828 1.20027 1.27866 1.95545 1.22512 0.92885 0.84741 1.01446 1.21715 0.94392 0.94629 1.05073 1.20525 0.91324 0.93874 0.90114 0.86283 1.44750 1.76169 1.05214 1.12652 1.15873 0.78229 0.81141 0.84214 1.90991 1.54220 1.64355 1.34022 1.42502 1.70893 1.06782 1.12226 1.17213 0.96364 0.78953 0.99978 1.20012 1.03456 0.94184 1.10499 1.20453 0.98459 0.92930 0.99507 1.21393 0.98566 1.00092 0.98842 1.17502 0.91604 0.90207 0.89097 1.19515 1.02004 0.96659 1.30564 0.90671 1.25869 0.96152 0.97965 0.94282 1.69804 1.20670 1.15461 1.37006 0.86329 0.81607 0.78510 0.79985 1.19095 1.20425 1.18945 1.21033 1.00907 0.94706 1.05937 1.21101 0.91465 0.76876 0.81795 1.43847 1.11574 1.63003 1.23728 1.90791 1.62652 1.45745 1.40268 0.93883 0.89579 0.93875 0.92494 0.92565 0.88942 0.89696 0.76853 0.77274 0.89385 0.89073 0.86117 0.91088 0.87404 0.76784 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.43 10.70 -35.23 -0.38 -3.81 16 3 C 0.06 0.48 5.83 37.16 0.22 0.70 16 4 C -0.12 -0.88 5.07 -26.73 -0.14 -1.02 16 5 C 0.15 1.70 2.38 -69.08 -0.16 1.54 16 6 H 0.12 1.41 7.58 -51.93 -0.39 1.02 16 7 N -0.73 -9.70 4.06 -59.81 -0.24 -9.95 16 8 C 0.70 13.41 8.12 -86.92 -0.71 12.70 16 9 O -0.56 -13.40 13.72 5.29 0.07 -13.33 16 10 N -0.68 -12.76 5.35 -14.27 -0.08 -12.83 16 11 C 0.17 3.96 6.26 -83.76 -0.52 3.43 16 12 C -0.26 -5.88 9.97 -39.10 -0.39 -6.27 16 13 C -0.09 -2.27 10.02 -39.69 -0.40 -2.66 16 14 C -0.17 -4.58 8.66 -38.84 -0.34 -4.92 16 15 C 0.12 3.41 5.55 -106.85 -0.59 2.81 16 16 C -0.46 -13.10 9.06 -37.74 -0.34 -13.45 16 17 H 0.08 2.12 7.87 -52.48 -0.41 1.70 16 18 C 0.07 1.96 5.25 -17.34 -0.09 1.87 16 19 N -0.80 -21.86 10.82 55.55 0.60 -21.26 16 20 Si 0.91 19.95 29.57 -169.99 -5.03 14.93 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.20 -5.59 8.39 -38.69 -0.32 -5.91 16 25 C 0.51 6.64 7.46 -10.99 -0.08 6.56 16 26 N -0.86 -7.18 8.74 31.22 0.27 -6.90 16 27 O -0.52 -9.64 17.16 5.56 0.10 -9.55 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.50 7.44 -51.93 -0.39 0.11 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.40 4.05 8.62 -40.82 -0.35 3.70 16 36 H 0.39 5.69 8.83 -40.82 -0.36 5.33 16 37 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.12 3.35 6.18 -52.49 -0.32 3.02 16 40 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 41 H 0.11 3.13 6.44 -52.49 -0.34 2.79 16 42 H 0.40 3.11 8.93 -40.82 -0.36 2.74 16 43 H 0.40 1.94 8.20 -40.82 -0.33 1.61 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -37.68 367.43 -7.67 -45.34 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -5.76 Total: 15.12 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.76 Total: -3.30 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.55 Total: -50.94 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.21 Total: -26.68 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.68 -7.67 -45.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364125935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.992 kcal (2) G-P(sol) polarization free energy of solvation -37.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds