Wall clock time and date at job start Tue Mar 31 2020 13:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00038 * 2 1 4 4 C 1.52996 * 109.47281 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47047 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46894 * 304.99919 * 5 4 3 7 7 N 1.46501 * 109.46746 * 65.00100 * 5 4 3 8 8 C 1.34778 * 119.99719 * 204.99760 * 7 5 4 9 9 O 1.21589 * 120.00043 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99953 * 180.02562 * 8 7 5 11 11 C 1.39956 * 119.99988 * 174.81966 * 10 8 7 12 12 C 1.39285 * 119.94544 * 146.38713 * 11 10 8 13 13 C 1.38496 * 120.42965 * 179.97438 * 12 11 10 14 14 C 1.37681 * 120.31662 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.88803 * 0.02562 * 14 13 12 16 16 C 1.41402 * 120.20925 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00050 * 151.77417 * 16 15 14 18 18 C 1.39938 * 120.00346 * 331.76268 * 16 15 14 19 19 N 1.30832 * 119.99451 * 349.00445 * 18 16 15 20 20 Si 1.86800 * 120.00071 * 168.99550 * 18 16 15 21 21 H 1.48504 * 109.46855 * 60.00684 * 20 18 16 22 22 H 1.48497 * 109.46746 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47126 * 300.00692 * 20 18 16 24 24 C 1.38230 * 119.94554 * 326.11068 * 11 10 8 25 25 C 1.50694 * 109.46812 * 185.00209 * 5 4 3 26 26 N 1.34776 * 120.00474 * 60.27833 * 25 5 4 27 27 O 1.21280 * 119.99824 * 239.99689 * 25 5 4 28 28 H 1.08994 * 109.47406 * 60.00031 * 1 2 3 29 29 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46831 * 300.00137 * 1 2 3 31 31 H 1.09003 * 109.47039 * 59.99471 * 3 2 1 32 32 H 1.08999 * 109.46569 * 300.00130 * 3 2 1 33 33 H 1.09004 * 109.46716 * 59.99845 * 4 3 2 34 34 H 1.08993 * 109.47412 * 300.00085 * 4 3 2 35 35 H 0.96996 * 120.00360 * 25.00083 * 7 5 4 36 36 H 0.96998 * 119.99888 * 354.82225 * 10 8 7 37 37 H 1.07999 * 119.78936 * 359.97335 * 12 11 10 38 38 H 1.07999 * 119.83912 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.05614 * 180.02562 * 14 13 12 40 40 H 0.97001 * 119.99514 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.16415 * 359.97438 * 24 11 10 42 42 H 0.97001 * 120.00311 * 179.72609 * 26 25 5 43 43 H 0.97006 * 119.99891 * 359.72320 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0000 6 1 3.7673 3.1537 -0.8424 7 7 3.8225 3.2668 1.2513 8 6 3.8019 4.6136 1.2982 9 8 4.0611 5.2607 0.3020 10 7 3.4941 5.2431 2.4495 11 6 3.5780 6.6379 2.5284 12 6 2.6834 7.3440 3.3291 13 6 2.7576 8.7243 3.4150 14 6 3.7180 9.4139 2.7095 15 6 4.6288 8.7138 1.8963 16 6 5.6181 9.4151 1.1692 17 1 6.5550 8.9340 0.9297 18 6 5.3834 10.7325 0.7596 19 7 4.1827 11.2431 0.8555 20 14 6.7844 11.7618 0.0762 21 1 7.3379 11.1031 -1.1342 22 1 6.2783 13.1112 -0.2817 23 1 7.8508 11.8895 1.1017 24 6 4.5522 7.3120 1.8161 25 6 5.6550 2.4657 -0.1232 26 7 6.1980 1.8721 -1.2046 27 8 6.3717 2.9102 0.7483 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8573 0.6436 -0.8891 34 1 3.8567 0.6440 0.8908 35 1 3.6155 2.7506 2.0460 36 1 3.2145 4.7294 3.2233 37 1 1.9268 6.8118 3.8866 38 1 2.0593 9.2622 4.0391 39 1 3.7723 10.4902 2.7799 40 1 4.0200 12.1564 0.5720 41 1 5.2494 6.7650 1.1989 42 1 7.1619 1.8004 -1.2858 43 1 5.6248 1.5166 -1.9018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364125935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:55 Heat of formation + Delta-G solvation = -121.592035 kcal Electronic energy + Delta-G solvation = -26739.516007 eV Core-core repulsion = 22783.327265 eV Total energy + Delta-G solvation = -3956.188741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79644 -40.50664 -39.08317 -38.83930 -36.55285 -36.06483 -34.93594 -34.67705 -32.59471 -31.72811 -29.84485 -28.28867 -27.23834 -26.55878 -23.70530 -23.25556 -22.75222 -21.77922 -21.42806 -19.67769 -19.34166 -18.76726 -18.15710 -17.45612 -17.13531 -17.00828 -16.76537 -16.45601 -16.22587 -16.12225 -15.97573 -15.42265 -15.35037 -14.91434 -14.75777 -14.62620 -14.13569 -13.95347 -13.59006 -13.11611 -12.99357 -12.83502 -12.80812 -12.57676 -12.30210 -12.21867 -12.07226 -11.98925 -11.59112 -11.45589 -11.33860 -11.05308 -10.72223 -10.69461 -10.62155 -10.19794 -9.34620 -8.67517 -8.55832 -6.37728 0.93261 1.02449 1.34522 1.46889 1.49545 1.51885 1.58169 2.11770 2.21856 2.49389 2.76950 2.87026 3.25037 3.74213 3.76034 3.85868 3.96807 4.19181 4.32210 4.48326 4.52283 4.56058 4.58693 4.64926 4.84411 4.89947 4.96198 5.06141 5.11284 5.13645 5.18482 5.27288 5.34901 5.70672 5.83867 5.86562 6.05673 6.12674 6.16150 6.18955 6.38447 6.40507 6.70496 6.95798 7.01472 7.05680 7.30037 7.57360 8.38113 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.003084 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.827110 B = 9077.571598 C =10195.017382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.060 3.940 4 C -0.105 4.105 5 C 0.152 3.848 6 H 0.114 0.886 7 N -0.709 5.709 8 C 0.701 3.299 9 O -0.614 6.614 10 N -0.668 5.668 11 C 0.175 3.825 12 C -0.245 4.245 13 C -0.091 4.091 14 C -0.194 4.194 15 C 0.088 3.912 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.033 3.967 19 N -0.830 5.830 20 Si 0.984 3.016 21 H -0.267 1.267 22 H -0.259 1.259 23 H -0.259 1.259 24 C -0.233 4.233 25 C 0.499 3.501 26 N -0.831 5.831 27 O -0.584 6.584 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.418 0.582 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.288 0.712 41 H 0.077 0.923 42 H 0.408 0.592 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 -22.315 -2.488 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.017 4.017 4 C -0.143 4.143 5 C 0.042 3.958 6 H 0.132 0.868 7 N -0.366 5.366 8 C 0.402 3.598 9 O -0.493 6.493 10 N -0.317 5.317 11 C 0.081 3.919 12 C -0.266 4.266 13 C -0.110 4.110 14 C -0.214 4.214 15 C 0.085 3.915 16 C -0.534 4.534 17 H 0.078 0.922 18 C -0.180 4.180 19 N -0.457 5.457 20 Si 0.805 3.195 21 H -0.192 1.192 22 H -0.183 1.183 23 H -0.183 1.183 24 C -0.255 4.255 25 C 0.283 3.717 26 N -0.397 5.397 27 O -0.463 6.463 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.256 0.744 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.239 0.761 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.937 -21.426 -2.810 22.410 hybrid contribution 0.514 0.317 -0.155 0.623 sum -5.423 -21.109 -2.965 21.995 Atomic orbital electron populations 1.22917 0.79576 1.03870 1.00730 1.87796 1.21236 1.27978 1.95629 1.22500 0.92973 0.84719 1.01476 1.21641 0.93977 0.91933 1.06758 1.20736 0.90525 0.95695 0.88823 0.86828 1.44549 1.74459 1.03212 1.14355 1.16114 0.77644 0.82648 0.83416 1.90964 1.56329 1.66048 1.35916 1.42268 1.70798 1.05236 1.13354 1.17278 0.94923 0.81174 0.98523 1.20464 1.03108 0.93860 1.09159 1.20855 0.97670 0.93855 0.98599 1.21358 1.00049 0.99645 1.00313 1.17833 0.92581 0.91081 0.89997 1.19698 1.02112 0.98560 1.33051 0.92245 1.26705 0.98932 0.98323 0.94051 1.69847 1.22265 1.16191 1.37406 0.85239 0.78058 0.77185 0.79052 1.19196 1.18292 1.18285 1.20916 1.02372 0.94599 1.07625 1.21438 0.92000 0.76348 0.81961 1.43650 1.12346 1.60961 1.22709 1.90771 1.63981 1.48769 1.42731 0.93427 0.88221 0.93547 0.92741 0.92424 0.86315 0.88944 0.74746 0.74427 0.84680 0.85566 0.87504 0.90172 0.90518 0.76082 0.74868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.08 10.70 -148.98 -1.59 -7.67 16 3 C 0.06 0.81 5.83 71.98 0.42 1.23 16 4 C -0.11 -1.28 5.07 30.59 0.16 -1.13 16 5 C 0.15 3.24 2.38 44.25 0.11 3.34 16 6 H 0.11 2.63 7.58 -2.38 -0.02 2.61 16 7 N -0.71 -18.18 4.06 -461.40 -1.88 -20.05 16 8 C 0.70 26.79 8.12 179.05 1.45 28.24 16 9 O -0.61 -30.44 13.72 -4.00 -0.05 -30.49 16 10 N -0.67 -24.53 5.35 -317.33 -1.70 -26.23 16 11 C 0.17 8.26 6.26 38.09 0.24 8.50 16 12 C -0.24 -10.49 9.97 22.58 0.23 -10.26 16 13 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 14 C -0.19 -10.77 8.66 22.75 0.20 -10.57 16 15 C 0.09 5.29 5.55 -21.31 -0.12 5.17 16 16 C -0.50 -30.72 9.06 23.46 0.21 -30.50 16 17 H 0.06 3.63 7.87 -2.91 -0.02 3.61 16 18 C 0.03 1.84 5.25 85.25 0.45 2.29 16 19 N -0.83 -46.48 10.82 21.83 0.24 -46.25 16 20 Si 0.98 42.04 29.57 68.60 2.03 44.07 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 C -0.23 -13.39 8.39 22.85 0.19 -13.20 16 25 C 0.50 12.91 7.46 87.66 0.65 13.56 16 26 N -0.83 -12.80 8.74 -173.54 -1.52 -14.31 16 27 O -0.58 -22.10 17.16 -3.03 -0.05 -22.15 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.76 7.75 -2.39 -0.02 0.74 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.12 0.87 7.44 -2.38 -0.02 0.85 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.42 7.67 8.62 -92.71 -0.80 6.87 16 36 H 0.42 11.03 8.83 -92.71 -0.82 10.21 16 37 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 39 H 0.11 6.14 6.18 -2.91 -0.02 6.12 16 40 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 41 H 0.08 4.81 6.44 -2.91 -0.02 4.79 16 42 H 0.41 5.85 8.93 -92.71 -0.83 5.02 16 43 H 0.42 3.08 8.20 -92.70 -0.76 2.32 16 Total: -1.00 -88.27 367.43 -0.98 -89.25 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -2.11 Total: 39.67 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.65 Total: -5.83 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.85 Total: -106.84 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -1.70 Total: -60.31 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -88.27 -0.98 -89.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364125935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.339 kcal (2) G-P(sol) polarization free energy of solvation -88.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds