Wall clock time and date at job start Tue Mar 31 2020 12:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46982 * 2 1 4 4 C 1.46498 * 119.99791 * 269.99627 * 3 2 1 5 5 C 1.50691 * 109.47344 * 270.00210 * 4 3 2 6 6 H 1.08001 * 120.00502 * 359.97438 * 5 4 3 7 7 C 1.37886 * 120.00240 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99617 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00086 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47619 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47185 * 119.99966 * 9 7 5 12 12 H 1.48510 * 109.47048 * 239.99458 * 9 7 5 13 13 C 1.34772 * 119.99642 * 90.00174 * 3 2 1 14 14 O 1.21589 * 119.99497 * 179.97438 * 13 3 2 15 15 N 1.34779 * 120.00534 * 359.97438 * 13 3 2 16 16 C 1.39936 * 120.00225 * 173.92918 * 15 13 3 17 17 C 1.38935 * 120.04106 * 333.78351 * 16 15 13 18 18 C 1.38122 * 120.03336 * 180.02562 * 17 16 15 19 19 C 1.38209 * 120.12836 * 359.69976 * 18 17 16 20 20 C 1.38758 * 120.08341 * 0.55939 * 19 18 17 21 21 O 1.35932 * 120.01782 * 179.74661 * 20 19 18 22 22 C 1.34686 * 116.99209 * 245.25212 * 21 20 19 23 23 O 1.21513 * 120.00582 * 5.10736 * 22 21 20 24 24 N 1.34782 * 119.99592 * 185.10319 * 22 21 20 25 25 C 1.46498 * 119.99799 * 180.02562 * 24 22 21 26 26 C 1.38620 * 119.95901 * 359.46522 * 20 19 18 27 27 H 1.08997 * 109.47403 * 299.99929 * 1 2 3 28 28 H 1.08999 * 109.47288 * 60.00006 * 1 2 3 29 29 H 1.09002 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47403 * 240.00071 * 2 1 3 31 31 H 1.08999 * 109.47288 * 119.99994 * 2 1 3 32 32 H 1.08996 * 109.47075 * 30.00536 * 4 3 2 33 33 H 1.09003 * 109.46858 * 149.99922 * 4 3 2 34 34 H 0.96995 * 120.00066 * 180.02562 * 8 7 5 35 35 H 0.96993 * 119.99476 * 353.93384 * 15 13 3 36 36 H 1.07994 * 119.98026 * 0.02622 * 17 16 15 37 37 H 1.08007 * 119.93207 * 179.97438 * 18 17 16 38 38 H 1.08004 * 119.95880 * 180.27288 * 19 18 17 39 39 H 0.96995 * 119.99735 * 0.02562 * 24 22 21 40 40 H 1.08995 * 109.47386 * 60.00274 * 25 24 22 41 41 H 1.09007 * 109.46737 * 179.97438 * 25 24 22 42 42 H 1.08996 * 109.47364 * 299.99689 * 25 24 22 43 43 H 1.07997 * 120.06267 * 180.23517 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6176 9 14 5.9133 2.0963 -3.4170 10 1 6.6008 1.2404 -2.4170 11 1 5.9204 1.4181 -4.7381 12 1 6.6215 3.3973 -3.5248 13 6 2.2429 2.0165 1.1672 14 8 2.6486 3.1627 1.1672 15 7 2.0178 1.3814 2.3344 16 6 2.3699 1.9927 3.5430 17 6 3.3916 2.9337 3.5747 18 6 3.7393 3.5367 4.7677 19 6 3.0685 3.2105 5.9312 20 6 2.0510 2.2674 5.9064 21 8 1.3956 1.9439 7.0525 22 6 1.5420 0.6840 7.5055 23 8 2.3077 -0.0772 6.9480 24 7 0.8391 0.2675 8.5775 25 6 0.9987 -1.1027 9.0707 26 6 1.6994 1.6597 4.7111 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1411 -1.1384 34 1 3.6753 3.5170 -4.4435 35 1 1.6119 0.5005 2.3367 36 1 3.9140 3.1939 2.6660 37 1 4.5341 4.2677 4.7905 38 1 3.3397 3.6869 6.8618 39 1 0.2277 0.8750 9.0224 40 1 2.0375 -1.2672 9.3569 41 1 0.3552 -1.2541 9.9374 42 1 0.7224 -1.8061 8.2853 43 1 0.9051 0.9283 4.6892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364371056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:08 Heat of formation + Delta-G solvation = -56.718303 kcal Electronic energy + Delta-G solvation = -26798.348396 eV Core-core repulsion = 22844.972791 eV Total energy + Delta-G solvation = -3953.375605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.38980 -40.19813 -38.56640 -37.10377 -35.41603 -35.07233 -34.33790 -32.70640 -30.39192 -30.18416 -29.44411 -27.37429 -26.85358 -23.56587 -23.34784 -23.08505 -22.00733 -21.30057 -19.79739 -18.97858 -18.19379 -17.45985 -16.66669 -16.46176 -16.24650 -16.13140 -15.43623 -15.09736 -14.81787 -14.51753 -14.34026 -14.11189 -13.73519 -13.58778 -13.48167 -13.32383 -12.78105 -12.71344 -12.31298 -12.09731 -11.99680 -11.84772 -11.67115 -11.23055 -11.15748 -10.94454 -10.85178 -10.80385 -10.56349 -10.18140 -10.09071 -9.70299 -9.65013 -9.25106 -8.68513 -8.44130 -7.97857 -7.60713 -6.04865 -4.09398 1.09338 1.42490 2.12743 2.49493 3.11762 3.30099 3.37956 3.42755 3.59936 3.98153 4.11475 4.33454 4.48180 4.71789 4.92315 5.04301 5.11792 5.23083 5.28226 5.29382 5.36396 5.46427 5.53797 5.59286 5.64873 5.69767 5.82495 5.93229 6.13621 6.17487 6.38217 6.43356 6.45916 6.60543 6.73893 6.82782 6.95987 7.21723 7.34024 7.48104 7.64226 7.92934 8.07422 8.22164 8.52916 8.91404 9.18144 9.55991 11.03095 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002825 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.532551 B = 9909.663108 C =10568.174717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.260 3.740 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.699 3.301 14 O -0.565 6.565 15 N -0.692 5.692 16 C 0.202 3.798 17 C -0.124 4.124 18 C -0.083 4.083 19 C -0.145 4.145 20 C 0.117 3.883 21 O -0.301 6.301 22 C 0.639 3.361 23 O -0.549 6.549 24 N -0.713 5.713 25 C 0.105 3.895 26 C -0.165 4.165 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.403 0.597 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.409 0.591 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 -7.308 23.311 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.339 5.339 4 C 0.141 3.859 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.401 3.599 14 O -0.441 6.441 15 N -0.340 5.340 16 C 0.104 3.896 17 C -0.145 4.145 18 C -0.102 4.102 19 C -0.165 4.165 20 C 0.075 3.925 21 O -0.213 6.213 22 C 0.392 3.608 23 O -0.435 6.435 24 N -0.373 5.373 25 C -0.038 4.038 26 C -0.187 4.187 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.240 0.760 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.244 0.756 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.949 -6.769 22.644 24.635 hybrid contribution 0.330 -0.472 -0.176 0.602 sum -6.620 -7.241 22.469 24.517 Atomic orbital electron populations 1.22259 0.96647 1.01564 1.02548 1.21407 0.93574 0.84301 1.02714 1.47649 1.66819 1.13210 1.06221 1.19258 0.96321 0.93539 0.76829 1.21486 0.96912 1.31843 1.06237 0.92387 1.24929 0.97869 0.94914 0.96385 1.69939 1.35595 1.33482 1.14348 0.86442 0.84621 0.78063 0.78286 1.19804 1.21001 1.20870 1.15923 0.79337 0.84670 0.80016 1.90868 1.51479 1.16349 1.85439 1.43030 1.65708 1.21415 1.03832 1.17299 0.93190 0.94774 0.84329 1.21688 0.96219 0.96708 0.99877 1.20907 0.98959 0.99181 0.91121 1.20883 0.95131 1.00869 0.99624 1.17828 0.94583 0.98088 0.82023 1.84285 1.67096 1.29920 1.40024 1.18489 0.80345 0.80825 0.81173 1.91066 1.38853 1.54424 1.59185 1.44405 1.46463 1.15583 1.30809 1.21596 1.02779 0.80067 0.99359 1.20740 1.01983 1.04365 0.91573 0.93164 0.91706 0.91989 0.89334 0.92301 0.94737 0.93645 0.92758 0.76048 0.82573 0.84791 0.85432 0.75620 0.91737 0.89680 0.91704 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.66 5.84 -4.04 -0.02 1.64 16 3 N -0.60 -12.75 2.46 -180.81 -0.44 -13.19 16 4 C 0.26 6.71 5.16 -5.20 -0.03 6.68 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.70 14.92 8.06 -86.92 -0.70 14.22 16 14 O -0.57 -14.18 13.18 5.29 0.07 -14.11 16 15 N -0.69 -11.81 5.19 -14.24 -0.07 -11.88 16 16 C 0.20 3.40 6.40 -83.71 -0.54 2.87 16 17 C -0.12 -2.15 8.70 -39.37 -0.34 -2.50 16 18 C -0.08 -1.17 10.03 -39.63 -0.40 -1.57 16 19 C -0.15 -1.94 9.98 -39.40 -0.39 -2.33 16 20 C 0.12 1.68 5.38 -39.25 -0.21 1.47 16 21 O -0.30 -3.80 10.10 -24.74 -0.25 -4.05 16 22 C 0.64 7.74 8.50 54.06 0.46 8.20 16 23 O -0.55 -8.59 15.65 -19.28 -0.30 -8.90 16 24 N -0.71 -5.28 5.72 -72.11 -0.41 -5.70 16 25 C 0.10 0.55 10.70 59.85 0.64 1.19 16 26 C -0.16 -2.47 9.00 -39.25 -0.35 -2.83 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 31 H 0.06 0.79 6.46 -51.93 -0.34 0.46 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.40 5.68 6.61 -40.82 -0.27 5.41 16 36 H 0.16 3.12 5.90 -52.49 -0.31 2.81 16 37 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.41 1.85 8.94 -40.82 -0.36 1.49 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.15 8.14 -51.92 -0.42 -0.27 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -35.74 369.91 -7.90 -43.64 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.85 Total: 5.77 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -1.93 Total: 11.68 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.19 Total: -56.44 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.48 Total: -27.07 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.74 -7.90 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364371056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.077 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds