Wall clock time and date at job start Tue Mar 31 2020 12:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46982 * 2 1 4 4 C 1.46498 * 119.99791 * 269.99627 * 3 2 1 5 5 C 1.50691 * 109.47344 * 270.00210 * 4 3 2 6 6 H 1.08001 * 120.00502 * 359.97438 * 5 4 3 7 7 C 1.37886 * 120.00240 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99617 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00086 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47619 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47185 * 119.99966 * 9 7 5 12 12 H 1.48510 * 109.47048 * 239.99458 * 9 7 5 13 13 C 1.34772 * 119.99642 * 90.00174 * 3 2 1 14 14 O 1.21589 * 119.99497 * 179.97438 * 13 3 2 15 15 N 1.34779 * 120.00534 * 359.97438 * 13 3 2 16 16 C 1.39936 * 120.00225 * 173.92918 * 15 13 3 17 17 C 1.38935 * 120.04106 * 333.78351 * 16 15 13 18 18 C 1.38122 * 120.03336 * 180.02562 * 17 16 15 19 19 C 1.38209 * 120.12836 * 359.69976 * 18 17 16 20 20 C 1.38758 * 120.08341 * 0.55939 * 19 18 17 21 21 O 1.35932 * 120.01782 * 179.74661 * 20 19 18 22 22 C 1.34686 * 116.99209 * 245.25212 * 21 20 19 23 23 O 1.21513 * 120.00582 * 5.10736 * 22 21 20 24 24 N 1.34782 * 119.99592 * 185.10319 * 22 21 20 25 25 C 1.46498 * 119.99799 * 180.02562 * 24 22 21 26 26 C 1.38620 * 119.95901 * 359.46522 * 20 19 18 27 27 H 1.08997 * 109.47403 * 299.99929 * 1 2 3 28 28 H 1.08999 * 109.47288 * 60.00006 * 1 2 3 29 29 H 1.09002 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47403 * 240.00071 * 2 1 3 31 31 H 1.08999 * 109.47288 * 119.99994 * 2 1 3 32 32 H 1.08996 * 109.47075 * 30.00536 * 4 3 2 33 33 H 1.09003 * 109.46858 * 149.99922 * 4 3 2 34 34 H 0.96995 * 120.00066 * 180.02562 * 8 7 5 35 35 H 0.96993 * 119.99476 * 353.93384 * 15 13 3 36 36 H 1.07994 * 119.98026 * 0.02622 * 17 16 15 37 37 H 1.08007 * 119.93207 * 179.97438 * 18 17 16 38 38 H 1.08004 * 119.95880 * 180.27288 * 19 18 17 39 39 H 0.96995 * 119.99735 * 0.02562 * 24 22 21 40 40 H 1.08995 * 109.47386 * 60.00274 * 25 24 22 41 41 H 1.09007 * 109.46737 * 179.97438 * 25 24 22 42 42 H 1.08996 * 109.47364 * 299.99689 * 25 24 22 43 43 H 1.07997 * 120.06267 * 180.23517 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6176 9 14 5.9133 2.0963 -3.4170 10 1 6.6008 1.2404 -2.4170 11 1 5.9204 1.4181 -4.7381 12 1 6.6215 3.3973 -3.5248 13 6 2.2429 2.0165 1.1672 14 8 2.6486 3.1627 1.1672 15 7 2.0178 1.3814 2.3344 16 6 2.3699 1.9927 3.5430 17 6 3.3916 2.9337 3.5747 18 6 3.7393 3.5367 4.7677 19 6 3.0685 3.2105 5.9312 20 6 2.0510 2.2674 5.9064 21 8 1.3956 1.9439 7.0525 22 6 1.5420 0.6840 7.5055 23 8 2.3077 -0.0772 6.9480 24 7 0.8391 0.2675 8.5775 25 6 0.9987 -1.1027 9.0707 26 6 1.6994 1.6597 4.7111 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1411 -1.1384 34 1 3.6753 3.5170 -4.4435 35 1 1.6119 0.5005 2.3367 36 1 3.9140 3.1939 2.6660 37 1 4.5341 4.2677 4.7905 38 1 3.3397 3.6869 6.8618 39 1 0.2277 0.8750 9.0224 40 1 2.0375 -1.2672 9.3569 41 1 0.3552 -1.2541 9.9374 42 1 0.7224 -1.8061 8.2853 43 1 0.9051 0.9283 4.6892 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364371056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:07 Heat of formation + Delta-G solvation = -82.001782 kcal Electronic energy + Delta-G solvation = -26799.444770 eV Core-core repulsion = 22844.972791 eV Total energy + Delta-G solvation = -3954.471979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.41991 -41.66442 -39.75364 -38.19228 -37.03856 -35.89824 -35.79770 -34.74633 -31.71891 -31.51618 -30.76450 -28.77133 -27.97513 -25.30378 -24.53712 -24.42484 -23.30068 -22.41931 -20.99416 -20.15062 -19.52051 -18.84040 -18.54609 -17.68658 -17.46847 -17.41873 -16.68694 -16.49581 -16.12603 -15.88499 -15.57439 -15.37784 -15.16512 -14.74417 -14.68810 -14.52133 -14.21768 -13.82071 -13.62463 -13.32589 -13.18579 -13.08291 -13.06193 -12.92875 -12.72734 -12.53933 -12.30022 -12.20465 -11.98168 -11.89149 -11.72361 -11.47019 -10.95433 -10.64156 -10.37384 -9.86566 -9.61653 -9.05189 -8.21929 -6.36286 -0.03320 0.23857 1.22026 1.36446 1.38811 1.49870 1.55539 1.63915 2.10581 2.38491 2.74861 2.91219 3.07988 3.23973 3.79967 4.00022 4.06291 4.13540 4.27479 4.32365 4.38152 4.43750 4.50214 4.60403 4.61469 4.79639 4.91461 4.93551 4.96977 5.05743 5.16109 5.18553 5.22121 5.31788 5.34900 5.42599 5.53359 5.56700 5.77516 5.96915 6.02599 6.06012 6.29703 6.72271 6.96552 7.22399 7.30032 7.55123 8.84952 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002825 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.532551 B = 9909.663108 C =10568.174717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.611 5.611 4 C 0.278 3.722 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.270 1.270 11 H -0.269 1.269 12 H -0.281 1.281 13 C 0.696 3.304 14 O -0.612 6.612 15 N -0.674 5.674 16 C 0.179 3.821 17 C -0.151 4.151 18 C -0.077 4.077 19 C -0.136 4.136 20 C 0.112 3.888 21 O -0.296 6.296 22 C 0.632 3.368 23 O -0.590 6.590 24 N -0.691 5.691 25 C 0.099 3.901 26 C -0.161 4.161 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.029 0.971 33 H 0.001 0.999 34 H 0.267 0.733 35 H 0.418 0.582 36 H 0.122 0.878 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.426 0.574 40 H 0.056 0.944 41 H 0.127 0.873 42 H 0.056 0.944 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -8.810 25.956 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.345 5.345 4 C 0.157 3.843 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.398 3.602 14 O -0.491 6.491 15 N -0.324 5.324 16 C 0.082 3.918 17 C -0.172 4.172 18 C -0.096 4.096 19 C -0.155 4.155 20 C 0.070 3.930 21 O -0.207 6.207 22 C 0.385 3.615 23 O -0.478 6.478 24 N -0.351 5.351 25 C -0.043 4.043 26 C -0.183 4.183 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.257 0.743 36 H 0.140 0.860 37 H 0.177 0.823 38 H 0.178 0.822 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.146 0.854 42 H 0.075 0.925 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.335 -8.326 25.367 27.688 hybrid contribution 0.365 -0.020 -0.818 0.896 sum -6.970 -8.347 24.549 26.850 Atomic orbital electron populations 1.22178 0.94263 1.03748 1.01829 1.21733 0.95507 0.81417 1.03852 1.47523 1.67161 1.15015 1.04753 1.18692 0.95380 0.91480 0.78792 1.21714 0.97837 1.31929 1.06459 0.93129 1.25811 1.02246 0.94486 0.96409 1.70047 1.37600 1.34176 1.14821 0.85384 0.79176 0.77985 0.78338 1.19413 1.19377 1.20716 1.16052 0.78969 0.84268 0.80958 1.90836 1.53439 1.18550 1.86308 1.42661 1.65281 1.21717 1.02707 1.17447 0.94102 0.95679 0.84562 1.21568 0.97255 0.98422 0.99940 1.21152 0.99374 0.98866 0.90203 1.21225 0.93970 0.99930 1.00404 1.18023 0.94597 0.97975 0.82453 1.84284 1.66827 1.30451 1.39175 1.18798 0.80579 0.80164 0.81957 1.91046 1.40869 1.55194 1.60732 1.44503 1.45097 1.16589 1.28954 1.21859 1.03416 0.78508 1.00516 1.20828 1.01940 1.04397 0.91086 0.92728 0.93583 0.88249 0.89896 0.89437 0.95272 0.98067 0.92370 0.74314 0.86001 0.82318 0.82206 0.73695 0.92496 0.85426 0.92491 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 10.24 71.98 0.74 -3.35 16 2 C 0.10 3.05 5.84 86.38 0.50 3.56 16 3 N -0.61 -26.68 2.46 -844.22 -2.07 -28.75 16 4 C 0.28 15.12 5.16 85.63 0.44 15.56 16 5 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.55 5.46 84.66 0.46 1.02 16 8 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 9 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.70 30.98 8.06 179.06 1.44 32.42 16 14 O -0.61 -32.71 13.18 -4.00 -0.05 -32.76 16 15 N -0.67 -23.34 5.19 -317.22 -1.65 -24.99 16 16 C 0.18 6.10 6.40 38.14 0.24 6.35 16 17 C -0.15 -5.41 8.70 22.41 0.19 -5.22 16 18 C -0.08 -2.14 10.03 22.24 0.22 -1.92 16 19 C -0.14 -3.35 9.98 22.39 0.22 -3.13 16 20 C 0.11 3.04 5.38 22.49 0.12 3.16 16 21 O -0.30 -6.78 10.10 0.24 0.00 -6.78 16 22 C 0.63 13.99 8.50 129.79 1.10 15.10 16 23 O -0.59 -17.67 15.65 19.80 0.31 -17.36 16 24 N -0.69 -8.25 5.72 -612.43 -3.50 -11.75 16 25 C 0.10 0.76 10.70 127.77 1.37 2.12 16 26 C -0.16 -4.69 9.00 22.48 0.20 -4.48 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 31 H 0.09 2.23 6.46 -2.39 -0.02 2.21 16 32 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 34 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.42 11.45 6.61 -92.71 -0.61 10.83 16 36 H 0.12 5.25 5.90 -2.91 -0.02 5.23 16 37 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.43 2.37 8.94 -92.71 -0.83 1.54 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.13 -0.09 8.14 -2.38 -0.02 -0.11 16 42 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -81.96 369.91 2.47 -79.49 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.39 Total: 21.28 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 7.51 Total: 29.98 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -6.94 Total: -121.34 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: 0.26 Total: -56.90 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -81.96 2.47 -79.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364371056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.507 kcal (2) G-P(sol) polarization free energy of solvation -81.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds