Wall clock time and date at job start Tue Mar 31 2020 12:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46494 * 109.47536 * 2 1 4 4 C 1.46506 * 119.99933 * 270.00142 * 3 2 1 5 5 C 1.50699 * 109.46639 * 269.99603 * 4 3 2 6 6 H 1.08002 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00014 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99654 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00318 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47323 * 89.99984 * 9 7 5 11 11 H 1.48503 * 109.47001 * 209.99913 * 9 7 5 12 12 H 1.48500 * 109.47258 * 329.99942 * 9 7 5 13 13 C 1.34775 * 120.00213 * 89.99642 * 3 2 1 14 14 O 1.21582 * 120.00053 * 180.02562 * 13 3 2 15 15 N 1.34774 * 119.99934 * 0.27358 * 13 3 2 16 16 C 1.39630 * 120.00040 * 174.06271 * 15 13 3 17 17 C 1.38984 * 119.94273 * 335.14539 * 16 15 13 18 18 C 1.37743 * 120.13546 * 179.71809 * 17 16 15 19 19 C 1.39726 * 120.01699 * 0.55771 * 18 17 16 20 20 C 1.47597 * 120.05685 * 179.70192 * 19 18 17 21 21 N 1.34776 * 119.99837 * 0.02562 * 20 19 18 22 22 O 1.21585 * 120.00065 * 180.02562 * 20 19 18 23 23 C 1.39751 * 119.88963 * 359.71522 * 19 18 17 24 24 C 1.38110 * 119.86027 * 0.02562 * 23 19 18 25 25 O 1.35994 * 120.00690 * 180.02562 * 24 23 19 26 26 C 1.42895 * 117.00091 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47420 * 300.00283 * 1 2 3 28 28 H 1.09007 * 109.46944 * 60.00354 * 1 2 3 29 29 H 1.09001 * 109.47687 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47169 * 239.99266 * 2 1 3 31 31 H 1.09007 * 109.46944 * 119.99646 * 2 1 3 32 32 H 1.08997 * 109.46641 * 29.99102 * 4 3 2 33 33 H 1.08990 * 109.47290 * 149.99701 * 4 3 2 34 34 H 0.97003 * 119.99918 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00357 * 354.06777 * 15 13 3 36 36 H 1.07999 * 119.93069 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.99335 * 180.25283 * 18 17 16 38 38 H 0.97007 * 120.00012 * 0.02562 * 21 20 19 39 39 H 0.96996 * 120.00254 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.07013 * 180.02562 * 23 19 18 41 41 H 1.09004 * 109.47030 * 60.00115 * 26 25 24 42 42 H 1.09000 * 109.47431 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.47219 * 300.00340 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7037 6 1 4.3426 1.2300 -1.0961 7 6 4.1492 2.3894 -2.8779 8 7 3.3490 3.1246 -3.6186 9 14 5.9132 2.0952 -3.4174 10 1 5.9761 0.8740 -4.2601 11 1 6.3924 3.2623 -4.2008 12 1 6.7736 1.9155 -2.2205 13 6 2.2429 2.0165 1.1672 14 8 2.6479 3.1629 1.1671 15 7 2.0235 1.3794 2.3343 16 6 2.3724 1.9911 3.5400 17 6 3.3693 2.9593 3.5637 18 6 3.7127 3.5695 4.7499 19 6 3.0667 3.2074 5.9348 20 6 3.4385 3.8560 7.2074 21 7 4.4015 4.7987 7.2272 22 8 2.8761 3.5398 8.2380 23 6 2.0681 2.2300 5.9130 24 6 1.7239 1.6251 4.7201 25 8 0.7523 0.6739 4.6953 26 6 0.1302 0.3494 5.9402 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.5818 1.6875 -2.0284 33 1 2.0956 3.1409 -1.1385 34 1 3.6751 3.5151 -4.4445 35 1 1.6232 0.4959 2.3369 36 1 3.8729 3.2367 2.6495 37 1 4.4848 4.3244 4.7650 38 1 4.8500 5.0512 6.4049 39 1 4.6462 5.2247 8.0635 40 1 1.5667 1.9482 6.8270 41 1 -0.3427 1.2405 6.3532 42 1 -0.6238 -0.4212 5.7796 43 1 0.8828 -0.0187 6.6373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365507142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:03 Heat of formation + Delta-G solvation = -66.391414 kcal Electronic energy + Delta-G solvation = -27179.213820 eV Core-core repulsion = 23225.418757 eV Total energy + Delta-G solvation = -3953.795063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.89257 -39.70080 -39.09182 -37.15159 -35.49200 -34.56596 -33.79091 -32.73598 -30.35209 -30.13219 -29.77759 -27.46467 -26.96517 -24.19634 -23.10660 -22.62323 -22.34192 -20.80885 -19.35255 -18.80329 -17.85787 -17.40100 -16.95519 -16.48638 -16.20889 -15.92027 -15.74118 -15.13238 -14.82649 -14.76772 -14.32914 -14.16351 -13.93767 -13.73770 -13.51210 -13.34104 -12.79108 -12.73916 -12.40803 -12.10385 -11.81221 -11.72454 -11.53441 -11.24033 -11.18689 -10.96604 -10.82930 -10.57706 -10.32274 -10.24570 -10.12216 -9.88626 -9.69367 -9.28045 -8.61318 -8.46450 -7.92518 -7.55561 -6.07254 -4.12140 0.79609 1.39070 2.75732 3.01339 3.16159 3.28077 3.35068 3.38777 3.39915 3.64144 3.99828 4.29609 4.45170 4.72082 4.79113 4.93876 4.96868 5.03523 5.17159 5.24225 5.26866 5.34977 5.43426 5.54757 5.65339 5.85456 5.94082 5.96263 6.08259 6.16742 6.30355 6.43646 6.54168 6.61457 6.73830 6.88031 7.16947 7.30372 7.31448 7.45176 7.60762 7.90158 8.10059 8.19325 8.49272 8.88084 9.13524 9.53216 11.00604 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003481 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.663384 B = 8040.615316 C = 9605.903100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.698 3.302 14 O -0.566 6.566 15 N -0.682 5.682 16 C 0.196 3.804 17 C -0.113 4.113 18 C -0.089 4.089 19 C -0.146 4.146 20 C 0.571 3.429 21 N -0.852 5.852 22 O -0.551 6.551 23 C -0.123 4.123 24 C 0.071 3.929 25 O -0.318 6.318 26 C 0.029 3.971 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.409 0.591 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.403 0.597 39 H 0.403 0.597 40 H 0.142 0.858 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -4.521 17.650 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.400 3.600 14 O -0.443 6.443 15 N -0.330 5.330 16 C 0.096 3.904 17 C -0.133 4.133 18 C -0.109 4.109 19 C -0.150 4.150 20 C 0.358 3.642 21 N -0.416 5.416 22 O -0.430 6.430 23 C -0.143 4.143 24 C 0.024 3.976 25 O -0.232 6.232 26 C -0.066 4.066 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.246 0.754 36 H 0.185 0.815 37 H 0.147 0.853 38 H 0.233 0.767 39 H 0.233 0.767 40 H 0.159 0.841 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.532 -4.046 17.682 18.480 hybrid contribution 1.024 -0.266 -0.220 1.081 sum -2.507 -4.312 17.462 18.161 Atomic orbital electron populations 1.22251 0.96544 1.01614 1.02599 1.21410 0.93694 0.84194 1.02653 1.47651 1.66625 1.13257 1.06179 1.19259 0.96298 0.93536 0.76805 1.21444 0.96934 1.31971 1.06296 0.92421 1.24922 0.97848 0.94897 0.96362 1.69930 1.35682 1.33390 1.14301 0.86498 0.84652 0.77672 0.78588 1.20681 1.21097 1.19906 1.15932 0.79384 0.84644 0.80042 1.90842 1.51649 1.16365 1.85426 1.42855 1.65301 1.21288 1.03516 1.17181 0.94050 0.96054 0.83077 1.21463 0.95748 0.96123 1.00000 1.21082 0.99260 0.99425 0.91121 1.19464 1.01301 1.01264 0.93013 1.18205 0.78765 0.78693 0.88539 1.43756 1.40939 1.42601 1.14282 1.90783 1.53733 1.63902 1.34585 1.20968 0.98984 0.97584 0.96806 1.18458 0.92205 0.93949 0.93003 1.86014 1.49459 1.54122 1.33596 1.23046 0.97428 1.01124 0.85016 0.92977 0.91781 0.91989 0.89355 0.92295 0.94730 0.93634 0.92685 0.75413 0.81504 0.85340 0.76702 0.76674 0.84074 0.92556 0.88219 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.15 0.38 -1.87 16 2 C 0.10 1.62 5.85 -4.05 -0.02 1.60 16 3 N -0.60 -12.33 2.46 -180.81 -0.44 -12.78 16 4 C 0.26 6.55 5.16 -5.19 -0.03 6.53 16 5 C -0.53 -14.46 9.39 -34.44 -0.32 -14.78 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.70 14.35 8.08 -86.92 -0.70 13.64 16 14 O -0.57 -13.58 13.07 5.29 0.07 -13.51 16 15 N -0.68 -11.20 5.10 -14.11 -0.07 -11.27 16 16 C 0.20 3.09 6.44 -83.55 -0.54 2.55 16 17 C -0.11 -1.76 8.69 -39.49 -0.34 -2.11 16 18 C -0.09 -1.12 9.53 -39.21 -0.37 -1.49 16 19 C -0.15 -1.87 5.87 -104.96 -0.62 -2.49 16 20 C 0.57 7.07 8.04 -12.44 -0.10 6.97 16 21 N -0.85 -6.93 8.82 30.47 0.27 -6.66 16 22 O -0.55 -8.59 17.17 5.29 0.09 -8.50 16 23 C -0.12 -1.61 8.57 -39.06 -0.33 -1.94 16 24 C 0.07 0.98 6.70 -39.15 -0.26 0.72 16 25 O -0.32 -3.86 9.89 -19.72 -0.20 -4.06 16 26 C 0.03 0.24 9.81 101.05 0.99 1.23 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.40 8.07 -51.93 -0.42 0.99 16 31 H 0.06 0.77 6.45 -51.93 -0.33 0.43 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.41 5.74 6.13 -40.82 -0.25 5.49 16 36 H 0.17 3.04 5.77 -52.49 -0.30 2.74 16 37 H 0.13 1.18 6.39 -52.49 -0.34 0.84 16 38 H 0.40 2.39 6.85 -40.82 -0.28 2.11 16 39 H 0.40 2.60 8.93 -40.82 -0.36 2.24 16 40 H 0.14 1.70 5.87 -52.49 -0.31 1.39 16 41 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -34.73 362.42 -6.90 -41.64 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.43 Total: 8.38 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -2.37 Total: 10.19 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.49 Total: -55.90 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.03 Total: -26.07 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.73 -6.90 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365507142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.755 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds