Wall clock time and date at job start Tue Mar 31 2020 12:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46494 * 109.47536 * 2 1 4 4 C 1.46506 * 119.99933 * 270.00142 * 3 2 1 5 5 C 1.50699 * 109.46639 * 269.99603 * 4 3 2 6 6 H 1.08002 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00014 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99654 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00318 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47323 * 89.99984 * 9 7 5 11 11 H 1.48503 * 109.47001 * 209.99913 * 9 7 5 12 12 H 1.48500 * 109.47258 * 329.99942 * 9 7 5 13 13 C 1.34775 * 120.00213 * 89.99642 * 3 2 1 14 14 O 1.21582 * 120.00053 * 180.02562 * 13 3 2 15 15 N 1.34774 * 119.99934 * 0.27358 * 13 3 2 16 16 C 1.39630 * 120.00040 * 174.06271 * 15 13 3 17 17 C 1.38984 * 119.94273 * 335.14539 * 16 15 13 18 18 C 1.37743 * 120.13546 * 179.71809 * 17 16 15 19 19 C 1.39726 * 120.01699 * 0.55771 * 18 17 16 20 20 C 1.47597 * 120.05685 * 179.70192 * 19 18 17 21 21 N 1.34776 * 119.99837 * 0.02562 * 20 19 18 22 22 O 1.21585 * 120.00065 * 180.02562 * 20 19 18 23 23 C 1.39751 * 119.88963 * 359.71522 * 19 18 17 24 24 C 1.38110 * 119.86027 * 0.02562 * 23 19 18 25 25 O 1.35994 * 120.00690 * 180.02562 * 24 23 19 26 26 C 1.42895 * 117.00091 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47420 * 300.00283 * 1 2 3 28 28 H 1.09007 * 109.46944 * 60.00354 * 1 2 3 29 29 H 1.09001 * 109.47687 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47169 * 239.99266 * 2 1 3 31 31 H 1.09007 * 109.46944 * 119.99646 * 2 1 3 32 32 H 1.08997 * 109.46641 * 29.99102 * 4 3 2 33 33 H 1.08990 * 109.47290 * 149.99701 * 4 3 2 34 34 H 0.97003 * 119.99918 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00357 * 354.06777 * 15 13 3 36 36 H 1.07999 * 119.93069 * 359.97438 * 17 16 15 37 37 H 1.07998 * 119.99335 * 180.25283 * 18 17 16 38 38 H 0.97007 * 120.00012 * 0.02562 * 21 20 19 39 39 H 0.96996 * 120.00254 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.07013 * 180.02562 * 23 19 18 41 41 H 1.09004 * 109.47030 * 60.00115 * 26 25 24 42 42 H 1.09000 * 109.47431 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.47219 * 300.00340 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8348 -1.7037 6 1 4.3426 1.2300 -1.0961 7 6 4.1492 2.3894 -2.8779 8 7 3.3490 3.1246 -3.6186 9 14 5.9132 2.0952 -3.4174 10 1 5.9761 0.8740 -4.2601 11 1 6.3924 3.2623 -4.2008 12 1 6.7736 1.9155 -2.2205 13 6 2.2429 2.0165 1.1672 14 8 2.6479 3.1629 1.1671 15 7 2.0235 1.3794 2.3343 16 6 2.3724 1.9911 3.5400 17 6 3.3693 2.9593 3.5637 18 6 3.7127 3.5695 4.7499 19 6 3.0667 3.2074 5.9348 20 6 3.4385 3.8560 7.2074 21 7 4.4015 4.7987 7.2272 22 8 2.8761 3.5398 8.2380 23 6 2.0681 2.2300 5.9130 24 6 1.7239 1.6251 4.7201 25 8 0.7523 0.6739 4.6953 26 6 0.1302 0.3494 5.9402 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.5818 1.6875 -2.0284 33 1 2.0956 3.1409 -1.1385 34 1 3.6751 3.5151 -4.4445 35 1 1.6232 0.4959 2.3369 36 1 3.8729 3.2367 2.6495 37 1 4.4848 4.3244 4.7650 38 1 4.8500 5.0512 6.4049 39 1 4.6462 5.2247 8.0635 40 1 1.5667 1.9482 6.8270 41 1 -0.3427 1.2405 6.3532 42 1 -0.6238 -0.4212 5.7796 43 1 0.8828 -0.0187 6.6373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365507142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:00 Heat of formation + Delta-G solvation = -92.302532 kcal Electronic energy + Delta-G solvation = -27180.337410 eV Core-core repulsion = 23225.418757 eV Total energy + Delta-G solvation = -3954.918653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.10663 -40.96647 -40.12626 -38.25769 -37.02635 -35.96636 -34.84340 -34.59493 -31.66479 -31.38841 -30.91917 -28.83773 -28.19123 -25.63802 -24.60955 -23.96833 -23.50208 -21.84102 -20.79158 -19.87639 -19.13548 -18.56306 -18.33203 -18.21777 -17.24959 -16.87055 -16.86068 -16.66103 -16.31714 -15.96097 -15.75620 -15.22156 -15.20108 -15.03144 -14.70236 -14.65209 -14.26966 -13.82402 -13.72242 -13.60409 -13.26613 -13.06529 -12.75490 -12.68553 -12.49407 -12.40806 -12.19364 -12.05965 -11.96265 -11.73638 -11.56843 -11.31313 -10.86079 -10.71578 -10.60713 -9.74707 -9.51889 -8.81626 -8.18658 -6.33352 -0.29655 0.32179 1.39673 1.42049 1.51466 1.59936 1.72693 2.20634 2.21828 2.41652 2.53988 2.82923 2.94925 3.11330 3.73036 3.84193 4.00907 4.03207 4.07463 4.27063 4.35403 4.41338 4.42128 4.52251 4.74170 4.78444 4.82695 4.90864 4.94585 5.01500 5.08324 5.20778 5.22341 5.34903 5.39901 5.58395 5.68926 5.79785 5.88285 6.04228 6.08891 6.30408 6.38419 6.75233 6.99081 7.26393 7.33013 7.57612 8.87784 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003481 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.663384 B = 8040.615316 C = 9605.903100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.610 5.610 4 C 0.279 3.721 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.695 3.305 14 O -0.610 6.610 15 N -0.666 5.666 16 C 0.165 3.835 17 C -0.129 4.129 18 C -0.080 4.080 19 C -0.142 4.142 20 C 0.571 3.429 21 N -0.829 5.829 22 O -0.585 6.585 23 C -0.126 4.126 24 C 0.083 3.917 25 O -0.327 6.327 26 C 0.020 3.980 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.002 0.998 34 H 0.267 0.733 35 H 0.420 0.580 36 H 0.138 0.862 37 H 0.161 0.839 38 H 0.416 0.584 39 H 0.414 0.586 40 H 0.154 0.846 41 H 0.059 0.941 42 H 0.126 0.874 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -5.763 19.411 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.344 5.344 4 C 0.157 3.843 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.397 3.603 14 O -0.490 6.490 15 N -0.315 5.315 16 C 0.067 3.933 17 C -0.150 4.150 18 C -0.099 4.099 19 C -0.146 4.146 20 C 0.357 3.643 21 N -0.393 5.393 22 O -0.467 6.467 23 C -0.146 4.146 24 C 0.035 3.965 25 O -0.241 6.241 26 C -0.075 4.075 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.045 0.955 33 H 0.020 0.980 34 H 0.076 0.924 35 H 0.259 0.741 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.248 0.752 39 H 0.247 0.753 40 H 0.171 0.829 41 H 0.078 0.922 42 H 0.144 0.856 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.013 -5.321 19.485 20.422 hybrid contribution 0.821 0.132 -0.634 1.046 sum -2.192 -5.189 18.851 19.675 Atomic orbital electron populations 1.22168 0.94461 1.03682 1.01682 1.21714 0.95374 0.81471 1.03821 1.47515 1.67068 1.14987 1.04782 1.18681 0.95359 0.91474 0.78747 1.21701 0.97840 1.31958 1.06481 0.92859 1.25802 1.02196 0.94484 0.96400 1.70048 1.37696 1.34215 1.14760 0.85433 0.79217 0.78064 0.78180 1.19079 1.20724 1.19743 1.16053 0.79041 0.84268 0.80931 1.90812 1.53510 1.18387 1.86258 1.42479 1.64995 1.21460 1.02530 1.17386 0.95372 0.97272 0.83278 1.21303 0.96451 0.97227 1.00020 1.21283 0.99522 0.99330 0.89789 1.19650 1.00807 1.00843 0.93343 1.18128 0.79280 0.79220 0.87644 1.43583 1.39246 1.40869 1.15632 1.90775 1.55252 1.65278 1.35404 1.21173 0.99039 0.97467 0.96948 1.18360 0.92033 0.93889 0.92211 1.86008 1.48914 1.53359 1.35807 1.23372 0.98092 1.02113 0.83874 0.92894 0.93673 0.88329 0.89856 0.89407 0.95495 0.98016 0.92432 0.74072 0.84484 0.82150 0.75170 0.75291 0.82871 0.92193 0.85585 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.31 16 2 C 0.10 3.00 5.85 86.38 0.51 3.50 16 3 N -0.61 -25.72 2.46 -844.23 -2.07 -27.80 16 4 C 0.28 14.75 5.16 85.63 0.44 15.19 16 5 C -0.54 -30.53 9.39 25.60 0.24 -30.29 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 9 Si 0.97 44.08 29.54 68.60 2.03 46.10 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.69 29.60 8.08 179.06 1.45 31.04 16 14 O -0.61 -30.93 13.07 -3.97 -0.05 -30.98 16 15 N -0.67 -22.00 5.10 -316.83 -1.61 -23.61 16 16 C 0.17 5.21 6.44 38.39 0.25 5.45 16 17 C -0.13 -4.11 8.69 22.33 0.19 -3.92 16 18 C -0.08 -1.91 9.53 22.51 0.21 -1.70 16 19 C -0.14 -3.41 5.87 -20.08 -0.12 -3.52 16 20 C 0.57 12.94 8.04 86.71 0.70 13.64 16 21 N -0.83 -11.28 8.82 -175.77 -1.55 -12.83 16 22 O -0.59 -17.24 17.17 -3.98 -0.07 -17.31 16 23 C -0.13 -3.09 8.57 22.61 0.19 -2.90 16 24 C 0.08 2.19 6.70 22.55 0.15 2.34 16 25 O -0.33 -7.34 9.89 -93.48 -0.92 -8.26 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 31 H 0.09 2.15 6.45 -2.38 -0.02 2.13 16 32 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 33 H 0.00 0.10 7.42 -2.39 -0.02 0.09 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.42 11.42 6.13 -92.71 -0.57 10.85 16 36 H 0.14 5.28 5.77 -2.91 -0.02 5.27 16 37 H 0.16 2.61 6.39 -2.91 -0.02 2.59 16 38 H 0.42 3.68 6.85 -92.70 -0.63 3.04 16 39 H 0.41 4.21 8.93 -92.71 -0.83 3.38 16 40 H 0.15 3.38 5.87 -2.91 -0.02 3.36 16 41 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 42 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 Total: -1.00 -78.50 362.42 1.61 -76.89 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -0.94 Total: 24.65 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 6.52 Total: 27.96 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -4.95 Total: -119.06 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -1.04 Total: -56.55 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -78.50 1.61 -76.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365507142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.412 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds