Wall clock time and date at job start Tue Mar 31 2020 13:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.46963 * 2 1 4 4 C 1.34238 * 116.99861 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99585 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99721 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.46927 * 60.00405 * 6 4 3 8 8 C 1.52998 * 109.47382 * 299.99690 * 6 4 3 9 9 C 1.53003 * 109.46474 * 179.97438 * 6 4 3 10 10 N 1.46508 * 109.46909 * 185.00045 * 9 6 4 11 11 C 1.34770 * 119.99882 * 180.02562 * 10 9 6 12 12 O 1.21577 * 120.00443 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.39455 * 120.00196 * 174.94684 * 13 11 10 15 15 C 1.38643 * 119.65174 * 174.65047 * 14 13 11 16 16 C 1.40819 * 118.67709 * 180.24622 * 15 14 13 17 17 C 1.41541 * 120.99706 * 179.71825 * 16 15 14 18 18 H 1.07999 * 120.00009 * 26.13405 * 17 16 15 19 19 C 1.40033 * 119.99877 * 206.12058 * 17 16 15 20 20 N 1.30741 * 120.00507 * 9.81302 * 19 17 16 21 21 Si 1.86803 * 119.99741 * 189.80899 * 19 17 16 22 22 H 1.48498 * 109.47208 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46877 * 120.00110 * 21 19 17 24 24 H 1.48492 * 109.47143 * 240.00260 * 21 19 17 25 25 C 1.41168 * 118.00080 * 359.51577 * 16 15 14 26 26 C 1.36584 * 119.13099 * 0.46333 * 25 16 15 27 27 N 1.32076 * 121.25974 * 359.77334 * 26 25 16 28 28 H 1.08995 * 109.47304 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47212 * 300.00955 * 1 2 3 30 30 H 1.09009 * 109.46909 * 60.00464 * 1 2 3 31 31 H 1.08994 * 109.47513 * 239.99461 * 2 1 3 32 32 H 1.09000 * 109.46828 * 119.98935 * 2 1 3 33 33 H 1.09005 * 109.46708 * 60.00631 * 8 6 4 34 34 H 1.08999 * 109.46853 * 179.97438 * 8 6 4 35 35 H 1.08997 * 109.47465 * 300.00728 * 8 6 4 36 36 H 1.09006 * 109.47224 * 65.00316 * 9 6 4 37 37 H 1.09002 * 109.47510 * 304.99732 * 9 6 4 38 38 H 0.97005 * 119.99345 * 0.02562 * 10 9 6 39 39 H 0.97003 * 119.99997 * 354.94423 * 13 11 10 40 40 H 1.07997 * 120.65978 * 359.97438 * 15 14 13 41 41 H 0.96992 * 120.00459 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.43038 * 180.23484 * 25 16 15 43 43 H 1.08000 * 119.37113 * 179.79087 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5844 3.4700 0.8895 8 6 3.4498 3.6837 -1.2499 9 6 5.4486 2.8573 0.0014 10 7 6.0083 4.2060 0.1213 11 6 7.3443 4.3816 0.1433 12 8 8.0852 3.4209 0.0641 13 7 7.8591 5.6223 0.2541 14 6 9.2367 5.7967 0.3830 15 6 9.7688 7.0769 0.3845 16 6 11.1631 7.2291 0.5105 17 6 11.7591 8.5129 0.5119 18 1 11.1901 9.3720 0.8350 19 6 13.0867 8.6689 0.0947 20 7 13.7144 7.6732 -0.4745 21 14 13.9608 10.2998 0.3512 22 1 13.0381 11.2572 1.0124 23 1 15.1552 10.0916 1.2086 24 1 14.3839 10.8466 -0.9629 25 6 11.9480 6.0629 0.6399 26 6 11.3335 4.8431 0.6283 27 7 10.0230 4.7371 0.5032 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.3613 3.7408 -1.2504 34 1 3.8661 4.6911 -1.2500 35 1 3.7861 3.1510 -2.1394 36 1 5.7896 2.4039 -0.9294 37 1 5.7799 2.2503 0.8440 38 1 5.4171 4.9724 0.1848 39 1 7.2714 6.3940 0.2441 40 1 9.1273 7.9401 0.2864 41 1 14.6339 7.7814 -0.7638 42 1 13.0207 6.1341 0.7428 43 1 11.9306 3.9482 0.7236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426071128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:58 Heat of formation + Delta-G solvation = -83.020346 kcal Electronic energy + Delta-G solvation = -25726.361204 eV Core-core repulsion = 21771.845057 eV Total energy + Delta-G solvation = -3954.516147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95514 -39.81551 -38.13433 -37.16786 -35.81162 -34.38778 -33.56209 -32.71351 -31.78459 -30.62242 -28.56665 -26.63350 -25.95958 -24.89667 -22.97815 -21.90055 -21.64284 -20.62606 -20.16485 -18.22847 -17.89386 -17.81119 -17.04888 -16.43493 -15.99439 -15.56445 -15.26629 -14.76704 -14.50766 -14.39253 -14.13981 -13.95320 -13.85102 -13.49849 -13.21549 -13.04759 -12.93850 -12.65928 -12.43837 -12.34016 -12.24085 -12.01401 -11.68401 -11.44962 -11.40123 -11.21923 -10.95734 -10.90807 -10.65280 -10.34437 -10.00375 -9.73013 -9.54959 -9.39075 -8.88246 -7.97842 -7.69775 -6.99879 -6.72926 -4.60755 1.88610 2.15526 2.74157 2.79517 3.02904 3.05990 3.09029 3.25015 3.85371 3.88465 4.13784 4.38600 4.46574 4.52956 4.55112 4.58331 4.73469 4.79788 4.85651 5.22706 5.32708 5.34363 5.37354 5.53535 5.62197 5.73326 5.78513 5.80630 6.00703 6.09754 6.52920 6.55185 6.64301 6.79891 6.94609 7.15322 7.24520 7.42145 7.46365 7.57640 7.92397 8.10986 8.33324 8.51511 8.76539 8.77640 9.13909 9.76443 10.12363 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.046011 B = 0.001907 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.398242 B =14680.789687 C =15121.541113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.471 3.529 5 O -0.498 6.498 6 C -0.094 4.094 7 H 0.116 0.884 8 C -0.145 4.145 9 C 0.157 3.843 10 N -0.754 5.754 11 C 0.692 3.308 12 O -0.526 6.526 13 N -0.670 5.670 14 C 0.365 3.635 15 C -0.305 4.305 16 C 0.146 3.854 17 C -0.455 4.455 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.791 5.791 21 Si 0.915 3.085 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.223 4.223 26 C 0.104 3.896 27 N -0.552 5.552 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.391 0.609 39 H 0.402 0.598 40 H 0.101 0.899 41 H 0.282 0.718 42 H 0.131 0.869 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.700 -5.822 0.055 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.312 3.688 5 O -0.384 6.384 6 C -0.114 4.114 7 H 0.134 0.866 8 C -0.203 4.203 9 C 0.032 3.968 10 N -0.414 5.414 11 C 0.392 3.608 12 O -0.396 6.396 13 N -0.318 5.318 14 C 0.136 3.864 15 C -0.331 4.331 16 C 0.137 3.863 17 C -0.486 4.486 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.417 5.417 21 Si 0.739 3.261 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.246 4.246 26 C -0.046 4.046 27 N -0.271 5.271 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.224 0.776 39 H 0.236 0.764 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.149 0.851 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.965 -8.040 -0.127 23.390 hybrid contribution 0.229 2.143 0.042 2.155 sum -21.736 -5.897 -0.085 22.522 Atomic orbital electron populations 1.21808 0.92509 1.03059 1.03556 1.23061 0.95400 0.80057 1.02827 1.86485 1.24338 1.32549 1.84061 1.23397 0.80694 0.92205 0.72498 1.90733 1.60295 1.42978 1.44418 1.21203 0.96270 0.90864 1.03067 0.86588 1.21809 1.02239 1.00746 0.95468 1.20859 0.88282 0.83695 1.03988 1.45093 1.05628 1.08619 1.82020 1.16003 0.81596 0.84249 0.78996 1.91046 1.57359 1.38602 1.52605 1.42548 1.06424 1.06867 1.75942 1.17753 0.81943 0.90242 0.96419 1.21168 0.96522 0.93619 1.21799 1.17606 0.89722 0.93744 0.85205 1.19590 0.96260 0.94006 1.38778 0.90133 1.25966 0.97368 0.98646 0.92394 1.69760 1.12116 1.32146 1.27653 0.86149 0.79524 0.81482 0.78897 1.18393 1.19655 1.19890 1.22076 1.01733 0.92303 1.08468 1.21637 0.89446 0.96502 0.97061 1.67191 1.05443 1.30973 1.23524 0.90174 0.91434 0.91429 0.91087 0.91088 0.90937 0.90626 0.91612 0.90668 0.90548 0.77577 0.76383 0.88083 0.90723 0.85109 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.43 6.19 37.16 0.23 0.66 16 3 O -0.36 -3.17 10.12 -39.28 -0.40 -3.57 16 4 C 0.47 4.90 7.26 36.01 0.26 5.16 16 5 O -0.50 -6.89 15.67 -18.75 -0.29 -7.19 16 6 C -0.09 -0.79 2.86 -91.77 -0.26 -1.05 16 7 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.15 -0.96 9.00 37.16 0.33 -0.62 16 9 C 0.16 1.92 4.41 -4.04 -0.02 1.91 16 10 N -0.75 -9.51 5.29 -65.22 -0.34 -9.86 16 11 C 0.69 12.99 8.51 -86.92 -0.74 12.25 16 12 O -0.53 -12.69 14.63 5.30 0.08 -12.61 16 13 N -0.67 -12.41 5.40 -15.86 -0.09 -12.50 16 14 C 0.37 8.70 7.41 -154.68 -1.15 7.55 16 15 C -0.30 -7.34 9.74 -38.46 -0.37 -7.71 16 16 C 0.15 3.85 5.60 -106.55 -0.60 3.26 16 17 C -0.45 -11.71 9.13 -37.65 -0.34 -12.05 16 18 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 19 C 0.07 1.83 5.31 -17.34 -0.09 1.74 16 20 N -0.79 -20.05 10.70 55.55 0.59 -19.46 16 21 Si 0.92 18.09 29.57 -169.99 -5.03 13.07 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 C -0.22 -5.86 8.73 -39.07 -0.34 -6.21 16 26 C 0.10 2.67 11.10 -18.04 -0.20 2.46 16 27 N -0.55 -14.51 7.89 -12.76 -0.10 -14.61 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 31 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 32 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 34 H 0.07 0.42 7.18 -51.93 -0.37 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.10 7.96 -51.93 -0.41 0.69 16 38 H 0.39 3.36 7.67 -40.82 -0.31 3.05 16 39 H 0.40 5.57 8.72 -40.82 -0.36 5.22 16 40 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 42 H 0.13 3.49 6.11 -52.49 -0.32 3.17 16 43 H 0.12 2.82 8.06 -52.49 -0.42 2.40 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -34.99 369.29 -8.89 -43.88 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.97 Total: 10.24 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -2.91 Total: 7.04 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.06 Total: -56.42 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.61 Total: -23.37 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.99 -8.89 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426071128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.137 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds