Wall clock time and date at job start Tue Mar 31 2020 13:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.46963 * 2 1 4 4 C 1.34238 * 116.99861 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99585 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99721 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.46927 * 60.00405 * 6 4 3 8 8 C 1.52998 * 109.47382 * 299.99690 * 6 4 3 9 9 C 1.53003 * 109.46474 * 179.97438 * 6 4 3 10 10 N 1.46508 * 109.46909 * 185.00045 * 9 6 4 11 11 C 1.34770 * 119.99882 * 180.02562 * 10 9 6 12 12 O 1.21577 * 120.00443 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.39455 * 120.00196 * 174.94684 * 13 11 10 15 15 C 1.38643 * 119.65174 * 174.65047 * 14 13 11 16 16 C 1.40819 * 118.67709 * 180.24622 * 15 14 13 17 17 C 1.41541 * 120.99706 * 179.71825 * 16 15 14 18 18 H 1.07999 * 120.00009 * 26.13405 * 17 16 15 19 19 C 1.40033 * 119.99877 * 206.12058 * 17 16 15 20 20 N 1.30741 * 120.00507 * 9.81302 * 19 17 16 21 21 Si 1.86803 * 119.99741 * 189.80899 * 19 17 16 22 22 H 1.48498 * 109.47208 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46877 * 120.00110 * 21 19 17 24 24 H 1.48492 * 109.47143 * 240.00260 * 21 19 17 25 25 C 1.41168 * 118.00080 * 359.51577 * 16 15 14 26 26 C 1.36584 * 119.13099 * 0.46333 * 25 16 15 27 27 N 1.32076 * 121.25974 * 359.77334 * 26 25 16 28 28 H 1.08995 * 109.47304 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47212 * 300.00955 * 1 2 3 30 30 H 1.09009 * 109.46909 * 60.00464 * 1 2 3 31 31 H 1.08994 * 109.47513 * 239.99461 * 2 1 3 32 32 H 1.09000 * 109.46828 * 119.98935 * 2 1 3 33 33 H 1.09005 * 109.46708 * 60.00631 * 8 6 4 34 34 H 1.08999 * 109.46853 * 179.97438 * 8 6 4 35 35 H 1.08997 * 109.47465 * 300.00728 * 8 6 4 36 36 H 1.09006 * 109.47224 * 65.00316 * 9 6 4 37 37 H 1.09002 * 109.47510 * 304.99732 * 9 6 4 38 38 H 0.97005 * 119.99345 * 0.02562 * 10 9 6 39 39 H 0.97003 * 119.99997 * 354.94423 * 13 11 10 40 40 H 1.07997 * 120.65978 * 359.97438 * 15 14 13 41 41 H 0.96992 * 120.00459 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.43038 * 180.23484 * 25 16 15 43 43 H 1.08000 * 119.37113 * 179.79087 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5844 3.4700 0.8895 8 6 3.4498 3.6837 -1.2499 9 6 5.4486 2.8573 0.0014 10 7 6.0083 4.2060 0.1213 11 6 7.3443 4.3816 0.1433 12 8 8.0852 3.4209 0.0641 13 7 7.8591 5.6223 0.2541 14 6 9.2367 5.7967 0.3830 15 6 9.7688 7.0769 0.3845 16 6 11.1631 7.2291 0.5105 17 6 11.7591 8.5129 0.5119 18 1 11.1901 9.3720 0.8350 19 6 13.0867 8.6689 0.0947 20 7 13.7144 7.6732 -0.4745 21 14 13.9608 10.2998 0.3512 22 1 13.0381 11.2572 1.0124 23 1 15.1552 10.0916 1.2086 24 1 14.3839 10.8466 -0.9629 25 6 11.9480 6.0629 0.6399 26 6 11.3335 4.8431 0.6283 27 7 10.0230 4.7371 0.5032 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.3613 3.7408 -1.2504 34 1 3.8661 4.6911 -1.2500 35 1 3.7861 3.1510 -2.1394 36 1 5.7896 2.4039 -0.9294 37 1 5.7799 2.2503 0.8440 38 1 5.4171 4.9724 0.1848 39 1 7.2714 6.3940 0.2441 40 1 9.1273 7.9401 0.2864 41 1 14.6339 7.7814 -0.7638 42 1 13.0207 6.1341 0.7428 43 1 11.9306 3.9482 0.7236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001426071128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:57 Heat of formation + Delta-G solvation = -106.002763 kcal Electronic energy + Delta-G solvation = -25727.357797 eV Core-core repulsion = 21771.845057 eV Total energy + Delta-G solvation = -3955.512740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82741 -41.34447 -39.85587 -38.03918 -36.93095 -36.14326 -35.33103 -33.72177 -32.55901 -32.39046 -30.30692 -27.94473 -27.48524 -25.71451 -23.89612 -23.61674 -23.18776 -21.78772 -21.41946 -19.71759 -19.50445 -18.76845 -17.83388 -17.74657 -17.23440 -16.97441 -16.72460 -16.12910 -15.95250 -15.88517 -15.65978 -15.16538 -14.81961 -14.72583 -14.53793 -14.29559 -14.17956 -13.81295 -13.58355 -13.27569 -13.14216 -12.94218 -12.85809 -12.82921 -12.54285 -12.50686 -12.15986 -12.06004 -11.81258 -11.54710 -11.48624 -11.48157 -11.28216 -11.19724 -10.16263 -9.93641 -9.61809 -8.83882 -8.57532 -6.56875 0.85053 1.00395 1.07196 1.27014 1.42954 1.57686 1.58611 1.85702 2.21485 2.28609 2.86673 3.20161 3.34641 3.73716 3.77524 3.79892 4.00377 4.07771 4.13636 4.14230 4.35114 4.58914 4.65574 4.74415 4.81219 4.86419 4.87433 4.93235 4.94526 4.96213 5.06453 5.14111 5.24938 5.27827 5.37558 5.42716 5.51904 5.65279 5.90863 5.98882 6.27296 6.57084 6.62763 6.81223 6.84984 7.01954 7.61793 7.91993 8.30743 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.046011 B = 0.001907 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.398242 B =14680.789687 C =15121.541113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.472 3.528 5 O -0.541 6.541 6 C -0.081 4.081 7 H 0.149 0.851 8 C -0.142 4.142 9 C 0.159 3.841 10 N -0.722 5.722 11 C 0.690 3.310 12 O -0.584 6.584 13 N -0.655 5.655 14 C 0.364 3.636 15 C -0.309 4.309 16 C 0.117 3.883 17 C -0.479 4.479 18 H 0.090 0.910 19 C 0.032 3.968 20 N -0.822 5.822 21 Si 0.994 3.006 22 H -0.252 1.252 23 H -0.266 1.266 24 H -0.267 1.267 25 C -0.241 4.241 26 C 0.096 3.904 27 N -0.580 5.580 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.416 0.584 39 H 0.426 0.574 40 H 0.128 0.872 41 H 0.290 0.710 42 H 0.120 0.880 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.977 -3.621 0.123 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.268 6.268 4 C 0.316 3.684 5 O -0.431 6.431 6 C -0.100 4.100 7 H 0.167 0.833 8 C -0.199 4.199 9 C 0.034 3.966 10 N -0.382 5.382 11 C 0.389 3.611 12 O -0.458 6.458 13 N -0.305 5.305 14 C 0.134 3.866 15 C -0.335 4.335 16 C 0.108 3.892 17 C -0.510 4.510 18 H 0.108 0.892 19 C -0.184 4.184 20 N -0.448 5.448 21 Si 0.814 3.186 22 H -0.176 1.176 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.265 4.265 26 C -0.054 4.054 27 N -0.301 5.301 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.254 0.746 39 H 0.264 0.736 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.368 -5.797 -0.061 25.048 hybrid contribution 0.844 1.377 -0.004 1.615 sum -23.524 -4.420 -0.066 23.936 Atomic orbital electron populations 1.21818 0.90126 1.04337 1.03933 1.23312 0.97233 0.79222 1.02469 1.86486 1.23252 1.33571 1.83468 1.23781 0.80968 0.92459 0.71238 1.90726 1.61286 1.44479 1.46570 1.21149 0.92898 0.90327 1.05660 0.83328 1.21845 1.03544 1.00899 0.93655 1.20782 0.91187 0.82694 1.01894 1.44686 1.03663 1.09925 1.79913 1.16209 0.83018 0.83391 0.78449 1.91017 1.59369 1.40325 1.55085 1.42311 1.04867 1.08040 1.75300 1.18014 0.83738 0.89792 0.95086 1.21366 0.96098 0.94634 1.21438 1.18034 0.91108 0.94236 0.85796 1.19924 0.97536 0.94020 1.39536 0.89240 1.26929 0.97575 1.02530 0.91322 1.69826 1.12838 1.34380 1.27733 0.84982 0.78146 0.76505 0.79001 1.17552 1.19095 1.19172 1.22026 1.01281 0.92944 1.10226 1.21862 0.89852 0.96869 0.96866 1.67288 1.05732 1.32274 1.24761 0.88480 0.91034 0.90990 0.91539 0.91538 0.88999 0.88984 0.92837 0.92829 0.92938 0.74558 0.73568 0.85443 0.89862 0.86240 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.29 71.98 0.74 -0.30 16 2 C 0.05 0.69 6.19 71.98 0.45 1.14 16 3 O -0.35 -5.71 10.12 -51.49 -0.52 -6.23 16 4 C 0.47 9.45 7.26 71.24 0.52 9.97 16 5 O -0.54 -15.38 15.67 21.97 0.34 -15.03 16 6 C -0.08 -1.19 2.86 -11.54 -0.03 -1.22 16 7 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 8 C -0.14 -1.46 9.00 71.98 0.65 -0.81 16 9 C 0.16 3.84 4.41 86.38 0.38 4.23 16 10 N -0.72 -16.96 5.29 -478.52 -2.53 -19.49 16 11 C 0.69 25.48 8.51 179.05 1.52 27.00 16 12 O -0.58 -28.77 14.63 -3.96 -0.06 -28.83 16 13 N -0.65 -23.43 5.40 -322.37 -1.74 -25.17 16 14 C 0.36 17.28 7.41 132.76 0.98 18.26 16 15 C -0.31 -14.77 9.74 23.00 0.22 -14.55 16 16 C 0.12 6.25 5.60 -21.11 -0.12 6.13 16 17 C -0.48 -24.62 9.13 23.52 0.21 -24.41 16 18 H 0.09 4.29 7.87 -2.91 -0.02 4.26 16 19 C 0.03 1.57 5.31 85.29 0.45 2.02 16 20 N -0.82 -42.04 10.70 21.84 0.23 -41.81 16 21 Si 0.99 36.24 29.57 68.60 2.03 38.27 16 22 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 23 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 25 C -0.24 -13.12 8.73 22.60 0.20 -12.92 16 26 C 0.10 5.08 11.10 84.27 0.94 6.02 16 27 N -0.58 -31.15 7.89 -194.27 -1.53 -32.69 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 32 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.09 0.65 8.11 -2.38 -0.02 0.63 16 34 H 0.09 0.66 7.18 -2.39 -0.02 0.64 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.05 1.55 7.96 -2.39 -0.02 1.53 16 38 H 0.42 5.69 7.67 -92.70 -0.71 4.97 16 39 H 0.43 10.66 8.72 -92.71 -0.81 9.85 16 40 H 0.13 5.23 8.06 -2.91 -0.02 5.21 16 41 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 42 H 0.12 6.65 6.11 -2.91 -0.02 6.63 16 43 H 0.13 6.46 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -79.38 369.29 2.87 -76.51 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.47 Total: 33.89 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 7.11 Total: 20.57 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -5.57 Total: -119.14 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.24 Total: -50.09 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -79.38 2.87 -76.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426071128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.493 kcal (2) G-P(sol) polarization free energy of solvation -79.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds