Wall clock time and date at job start Tue Mar 31 2020 13:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36839 * 124.79087 * 2 1 4 4 C 1.34963 * 108.95842 * 180.02562 * 3 2 1 5 5 N 1.40502 * 126.86042 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00271 * 359.97365 * 5 4 3 7 7 O 1.21609 * 119.99634 * 354.78510 * 6 5 4 8 8 N 1.34771 * 120.00062 * 174.78931 * 6 5 4 9 9 C 1.46927 * 120.63076 * 4.74114 * 8 6 5 10 10 C 1.52759 * 109.00356 * 233.58148 * 9 8 6 11 11 C 1.53039 * 109.38935 * 305.58974 * 10 9 8 12 12 C 1.53035 * 109.53641 * 61.24041 * 11 10 9 13 13 H 1.08994 * 109.49959 * 58.58889 * 12 11 10 14 14 C 1.50706 * 109.49520 * 178.68836 * 12 11 10 15 15 H 1.07992 * 119.99988 * 359.83521 * 14 12 11 16 16 C 1.37877 * 119.99621 * 179.84064 * 14 12 11 17 17 N 1.31515 * 120.00252 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99684 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47560 * 89.99788 * 18 16 14 20 20 H 1.48511 * 109.47317 * 209.99777 * 18 16 14 21 21 H 1.48500 * 109.47197 * 329.99543 * 18 16 14 22 22 C 1.46927 * 120.62837 * 185.01788 * 8 6 5 23 23 C 1.47012 * 106.27571 * 0.02562 * 4 3 2 24 24 C 1.46966 * 127.00283 * 179.97438 * 23 4 3 25 25 O 1.21560 * 120.00246 * 359.97438 * 24 23 4 26 26 O 1.34797 * 120.00362 * 179.97438 * 24 23 4 27 27 C 1.34531 * 124.78707 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47604 * 89.99358 * 1 2 3 29 29 H 1.09001 * 109.47311 * 209.99767 * 1 2 3 30 30 H 1.09003 * 109.46839 * 329.99202 * 1 2 3 31 31 H 1.07999 * 125.51463 * 0.26684 * 3 2 1 32 32 H 0.97002 * 119.99874 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.58336 * 353.41573 * 9 8 6 34 34 H 1.09002 * 109.58470 * 113.84294 * 9 8 6 35 35 H 1.09000 * 109.56258 * 185.55101 * 10 9 8 36 36 H 1.09005 * 109.36205 * 65.50759 * 10 9 8 37 37 H 1.09006 * 109.45812 * 301.22329 * 11 10 9 38 38 H 1.08996 * 109.46535 * 181.26471 * 11 10 9 39 39 H 0.97004 * 119.99901 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.59128 * 246.15466 * 22 8 6 41 41 H 1.09004 * 109.58691 * 6.44124 * 22 8 6 42 42 H 0.96704 * 117.00592 * 179.97438 * 26 24 23 43 43 H 1.07996 * 125.82446 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2457 1.1238 0.0000 4 6 3.5442 0.7556 -0.0006 5 7 4.6617 1.6071 -0.0003 6 6 4.4904 2.9440 0.0002 7 8 3.3727 3.4137 -0.0955 8 7 5.5576 3.7601 0.1065 9 6 6.9208 3.2122 0.1184 10 6 7.6540 3.7293 1.3547 11 6 7.5904 5.2581 1.3806 12 6 6.1300 5.7084 1.4596 13 1 5.6683 5.2906 2.3542 14 6 6.0700 7.2131 1.5176 15 1 6.9822 7.7909 1.5026 16 6 4.8503 7.8521 1.5899 17 7 3.7394 7.1485 1.6077 18 14 4.7760 9.7172 1.6625 19 1 4.7008 10.2637 0.2838 20 1 3.5734 10.1353 2.4269 21 1 5.9946 10.2354 2.3346 22 6 5.3796 5.2142 0.2187 23 6 3.5555 -0.7145 -0.0016 24 6 4.7360 -1.5899 -0.0030 25 8 5.8513 -1.1064 -0.0039 26 8 4.5821 -2.9291 -0.0033 27 6 2.2325 -1.1049 -0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.8818 2.1406 0.0041 32 1 5.5566 1.2329 -0.0004 33 1 6.8767 2.1235 0.1500 34 1 7.4512 3.5326 -0.7784 35 1 8.6953 3.4089 1.3221 36 1 7.1781 3.3301 2.2504 37 1 8.0445 5.6559 0.4730 38 1 8.1324 5.6295 2.2503 39 1 2.8813 7.5981 1.6582 40 1 5.7819 5.7013 -0.6695 41 1 4.3189 5.4463 0.3140 42 1 5.3879 -3.4637 -0.0046 43 1 1.8740 -2.1236 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574213776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:34 Heat of formation + Delta-G solvation = -64.492311 kcal Electronic energy + Delta-G solvation = -27563.424868 eV Core-core repulsion = 23609.712157 eV Total energy + Delta-G solvation = -3953.712712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37757 -39.68061 -39.53147 -36.94166 -35.98141 -34.48380 -33.34433 -32.09015 -31.56148 -29.71702 -28.82950 -26.77730 -25.05200 -24.54768 -23.29623 -21.80294 -21.19977 -20.42977 -19.41882 -18.57471 -18.04274 -17.59459 -17.08191 -16.12642 -15.96351 -15.79594 -15.24501 -15.13391 -14.75644 -14.53803 -14.01566 -13.82863 -13.69667 -13.39984 -12.94140 -12.86046 -12.70107 -12.55800 -12.52470 -12.24814 -12.10037 -11.89933 -11.53963 -10.97633 -10.87242 -10.61356 -10.52435 -10.43025 -10.31869 -10.18338 -9.85239 -9.39576 -9.07285 -8.93137 -8.50486 -8.41106 -7.86441 -7.32884 -5.97144 -4.05556 1.43441 2.48761 2.63897 3.05873 3.24339 3.32524 3.39695 3.41543 3.43525 3.96182 4.36076 4.46544 4.57469 4.76455 4.97368 5.19342 5.24555 5.31249 5.32696 5.38312 5.56495 5.69376 5.69525 6.02631 6.06958 6.20551 6.28436 6.37083 6.48239 6.63797 6.70053 6.81375 6.91115 7.02224 7.05117 7.13136 7.34291 7.35820 7.53794 7.77801 7.94627 8.00368 8.07827 8.42682 8.53909 8.97777 9.16782 9.59724 11.08063 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.003553 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.522447 B = 7878.795400 C = 9359.809522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.430 5.430 3 C -0.047 4.047 4 C 0.155 3.845 5 N -0.664 5.664 6 C 0.701 3.299 7 O -0.574 6.574 8 N -0.615 5.615 9 C 0.111 3.889 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.039 3.961 13 H 0.029 0.971 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.129 3.871 23 C -0.257 4.257 24 C 0.560 3.440 25 O -0.534 6.534 26 O -0.520 6.520 27 C 0.086 3.914 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.201 0.799 32 H 0.412 0.588 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.263 0.737 40 H 0.041 0.959 41 H 0.124 0.876 42 H 0.409 0.591 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -19.687 -3.862 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.105 5.105 3 C -0.175 4.175 4 C 0.053 3.947 5 N -0.314 5.314 6 C 0.403 3.597 7 O -0.452 6.452 8 N -0.351 5.351 9 C -0.013 4.013 10 C -0.172 4.172 11 C -0.147 4.147 12 C 0.019 3.981 13 H 0.047 0.953 14 C -0.558 4.558 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C 0.009 3.991 23 C -0.269 4.269 24 C 0.407 3.593 25 O -0.425 6.425 26 O -0.331 6.331 27 C -0.054 4.054 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.217 0.783 32 H 0.252 0.748 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.141 0.859 42 H 0.267 0.733 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.470 -18.759 -3.908 19.676 hybrid contribution 1.035 0.351 0.053 1.094 sum -3.435 -18.408 -3.855 19.118 Atomic orbital electron populations 1.22158 0.76246 1.04909 1.03768 1.43578 1.07072 1.05878 1.53962 1.22313 0.88525 0.91999 1.14698 1.17529 0.86977 0.86503 1.03648 1.42506 1.08165 1.04280 1.76421 1.15873 0.85325 0.80024 0.78446 1.90765 1.22604 1.74468 1.57324 1.47779 1.03370 1.08980 1.74961 1.21502 0.83884 0.96965 0.98966 1.21871 0.98919 0.98811 0.97581 1.21616 1.00406 0.92127 1.00587 1.19001 0.89411 0.95540 0.94108 0.95280 1.21081 0.92482 0.90762 1.51506 0.92340 1.25050 0.95850 0.98255 0.94858 1.69895 0.97512 1.35024 1.49327 0.86592 0.77501 0.85840 0.78050 1.20655 1.21256 1.19958 1.22245 1.06453 0.72239 0.98158 1.19128 0.90610 0.90130 1.27010 1.19770 0.87965 0.80029 0.71495 1.90831 1.26939 1.76073 1.48693 1.84561 1.42686 1.19296 1.86593 1.22140 0.89109 0.92171 1.02027 0.90389 0.89586 0.89027 0.78285 0.74815 0.91782 0.91783 0.92097 0.92138 0.93130 0.92996 0.92725 0.94036 0.85854 0.73308 0.80277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 11.03 59.84 0.66 1.13 16 2 N -0.43 -4.88 3.09 -123.97 -0.38 -5.27 16 3 C -0.05 -0.75 10.25 -16.48 -0.17 -0.92 16 4 C 0.15 2.65 7.13 -81.49 -0.58 2.07 16 5 N -0.66 -12.30 5.37 -12.85 -0.07 -12.37 16 6 C 0.70 15.20 8.26 -86.92 -0.72 14.48 16 7 O -0.57 -13.99 13.02 5.27 0.07 -13.92 16 8 N -0.62 -13.08 2.98 -178.76 -0.53 -13.61 16 9 C 0.11 1.91 6.40 -3.93 -0.03 1.88 16 10 C -0.13 -2.30 6.06 -26.83 -0.16 -2.46 16 11 C -0.11 -2.24 5.11 -26.69 -0.14 -2.37 16 12 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 14 C -0.52 -14.16 8.56 -34.44 -0.29 -14.45 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 17 N -0.88 -25.60 11.39 55.43 0.63 -24.97 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.13 3.19 5.39 -3.71 -0.02 3.17 16 23 C -0.26 -3.62 6.33 -102.92 -0.65 -4.27 16 24 C 0.56 7.47 8.32 34.27 0.29 7.75 16 25 O -0.53 -8.48 16.35 -19.31 -0.32 -8.80 16 26 O -0.52 -4.76 13.28 -40.76 -0.54 -5.30 16 27 C 0.09 0.92 11.20 -16.48 -0.18 0.74 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.09 0.61 8.13 -51.93 -0.42 0.18 16 31 H 0.20 3.61 5.87 -52.49 -0.31 3.31 16 32 H 0.41 7.16 4.79 -40.82 -0.20 6.96 16 33 H 0.06 0.99 5.57 -51.93 -0.29 0.70 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.12 3.52 5.15 -51.93 -0.27 3.25 16 42 H 0.41 1.93 9.11 45.56 0.42 2.35 16 43 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -34.72 353.93 -7.96 -42.69 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.84 Total: 10.79 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -2.30 Total: 9.14 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.35 Total: -56.21 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.79 Total: -28.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.72 -7.96 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574213776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.806 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds