Wall clock time and date at job start Tue Mar 31 2020 13:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36839 * 124.79087 * 2 1 4 4 C 1.34963 * 108.95842 * 180.02562 * 3 2 1 5 5 N 1.40502 * 126.86042 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00271 * 359.97365 * 5 4 3 7 7 O 1.21609 * 119.99634 * 354.78510 * 6 5 4 8 8 N 1.34771 * 120.00062 * 174.78931 * 6 5 4 9 9 C 1.46927 * 120.63076 * 4.74114 * 8 6 5 10 10 C 1.52759 * 109.00356 * 233.58148 * 9 8 6 11 11 C 1.53039 * 109.38935 * 305.58974 * 10 9 8 12 12 C 1.53035 * 109.53641 * 61.24041 * 11 10 9 13 13 H 1.08994 * 109.49959 * 58.58889 * 12 11 10 14 14 C 1.50706 * 109.49520 * 178.68836 * 12 11 10 15 15 H 1.07992 * 119.99988 * 359.83521 * 14 12 11 16 16 C 1.37877 * 119.99621 * 179.84064 * 14 12 11 17 17 N 1.31515 * 120.00252 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99684 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47560 * 89.99788 * 18 16 14 20 20 H 1.48511 * 109.47317 * 209.99777 * 18 16 14 21 21 H 1.48500 * 109.47197 * 329.99543 * 18 16 14 22 22 C 1.46927 * 120.62837 * 185.01788 * 8 6 5 23 23 C 1.47012 * 106.27571 * 0.02562 * 4 3 2 24 24 C 1.46966 * 127.00283 * 179.97438 * 23 4 3 25 25 O 1.21560 * 120.00246 * 359.97438 * 24 23 4 26 26 O 1.34797 * 120.00362 * 179.97438 * 24 23 4 27 27 C 1.34531 * 124.78707 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47604 * 89.99358 * 1 2 3 29 29 H 1.09001 * 109.47311 * 209.99767 * 1 2 3 30 30 H 1.09003 * 109.46839 * 329.99202 * 1 2 3 31 31 H 1.07999 * 125.51463 * 0.26684 * 3 2 1 32 32 H 0.97002 * 119.99874 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.58336 * 353.41573 * 9 8 6 34 34 H 1.09002 * 109.58470 * 113.84294 * 9 8 6 35 35 H 1.09000 * 109.56258 * 185.55101 * 10 9 8 36 36 H 1.09005 * 109.36205 * 65.50759 * 10 9 8 37 37 H 1.09006 * 109.45812 * 301.22329 * 11 10 9 38 38 H 1.08996 * 109.46535 * 181.26471 * 11 10 9 39 39 H 0.97004 * 119.99901 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.59128 * 246.15466 * 22 8 6 41 41 H 1.09004 * 109.58691 * 6.44124 * 22 8 6 42 42 H 0.96704 * 117.00592 * 179.97438 * 26 24 23 43 43 H 1.07996 * 125.82446 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2457 1.1238 0.0000 4 6 3.5442 0.7556 -0.0006 5 7 4.6617 1.6071 -0.0003 6 6 4.4904 2.9440 0.0002 7 8 3.3727 3.4137 -0.0955 8 7 5.5576 3.7601 0.1065 9 6 6.9208 3.2122 0.1184 10 6 7.6540 3.7293 1.3547 11 6 7.5904 5.2581 1.3806 12 6 6.1300 5.7084 1.4596 13 1 5.6683 5.2906 2.3542 14 6 6.0700 7.2131 1.5176 15 1 6.9822 7.7909 1.5026 16 6 4.8503 7.8521 1.5899 17 7 3.7394 7.1485 1.6077 18 14 4.7760 9.7172 1.6625 19 1 4.7008 10.2637 0.2838 20 1 3.5734 10.1353 2.4269 21 1 5.9946 10.2354 2.3346 22 6 5.3796 5.2142 0.2187 23 6 3.5555 -0.7145 -0.0016 24 6 4.7360 -1.5899 -0.0030 25 8 5.8513 -1.1064 -0.0039 26 8 4.5821 -2.9291 -0.0033 27 6 2.2325 -1.1049 -0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.8818 2.1406 0.0041 32 1 5.5566 1.2329 -0.0004 33 1 6.8767 2.1235 0.1500 34 1 7.4512 3.5326 -0.7784 35 1 8.6953 3.4089 1.3221 36 1 7.1781 3.3301 2.2504 37 1 8.0445 5.6559 0.4730 38 1 8.1324 5.6295 2.2503 39 1 2.8813 7.5981 1.6582 40 1 5.7819 5.7013 -0.6695 41 1 4.3189 5.4463 0.3140 42 1 5.3879 -3.4637 -0.0046 43 1 1.8740 -2.1236 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574213776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:33 Heat of formation + Delta-G solvation = -88.403599 kcal Electronic energy + Delta-G solvation = -27564.461740 eV Core-core repulsion = 23609.712157 eV Total energy + Delta-G solvation = -3954.749583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.47247 -41.19990 -40.50520 -38.61379 -36.89749 -35.96015 -35.20062 -33.61187 -32.81106 -31.52950 -29.92968 -27.73751 -27.00187 -26.11112 -24.32895 -23.50398 -22.54498 -21.61192 -20.90186 -20.06771 -19.28739 -18.59535 -18.55769 -18.01435 -17.18490 -16.83259 -16.60755 -16.33402 -16.27263 -15.88278 -15.45123 -15.30142 -15.26926 -14.63790 -14.50527 -14.30302 -14.07621 -13.91677 -13.62073 -13.38099 -13.25987 -13.21952 -12.87492 -12.68722 -12.42676 -12.31314 -12.23328 -11.89299 -11.73586 -11.65389 -11.63477 -11.16318 -10.97664 -10.84460 -10.51678 -9.55959 -9.49156 -8.65855 -8.09291 -6.26358 0.50094 1.26668 1.41519 1.42740 1.49515 1.53887 1.97100 2.08205 2.40163 2.44008 2.47860 2.93547 3.19413 3.73663 3.94917 4.06489 4.10816 4.20675 4.25618 4.45576 4.50786 4.55837 4.69201 4.70964 4.76478 4.78998 4.80345 4.96340 5.05473 5.08005 5.23366 5.25748 5.31439 5.55410 5.59364 5.67554 5.77119 5.86957 5.92878 6.00522 6.13130 6.31728 6.35490 6.85396 6.97049 7.17341 7.43140 7.51801 8.94370 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.003553 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.522447 B = 7878.795400 C = 9359.809522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.425 5.425 3 C -0.065 4.065 4 C 0.115 3.885 5 N -0.653 5.653 6 C 0.693 3.307 7 O -0.612 6.612 8 N -0.621 5.621 9 C 0.107 3.893 10 C -0.125 4.125 11 C -0.103 4.103 12 C 0.038 3.962 13 H -0.014 1.014 14 C -0.536 4.536 15 H 0.063 0.937 16 C 0.010 3.990 17 N -0.914 5.914 18 Si 0.959 3.041 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.263 1.263 22 C 0.145 3.855 23 C -0.285 4.285 24 C 0.566 3.434 25 O -0.569 6.569 26 O -0.502 6.502 27 C 0.127 3.873 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.417 0.583 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.260 0.740 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.431 0.569 43 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.578 -22.223 -4.245 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.099 5.099 3 C -0.194 4.194 4 C 0.014 3.986 5 N -0.303 5.303 6 C 0.395 3.605 7 O -0.493 6.493 8 N -0.356 5.356 9 C -0.015 4.015 10 C -0.163 4.163 11 C -0.141 4.141 12 C 0.019 3.981 13 H 0.004 0.996 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.189 4.189 17 N -0.553 5.553 18 Si 0.785 3.215 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.188 1.188 22 C 0.023 3.977 23 C -0.296 4.296 24 C 0.414 3.586 25 O -0.463 6.463 26 O -0.315 6.315 27 C -0.015 4.015 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.103 0.897 31 H 0.186 0.814 32 H 0.258 0.742 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.292 0.708 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.915 -21.367 -4.291 22.143 hybrid contribution 0.762 0.993 0.175 1.263 sum -3.153 -20.375 -4.116 21.024 Atomic orbital electron populations 1.22543 0.73269 1.06563 1.05398 1.43826 1.08715 1.04620 1.52695 1.21885 0.89240 0.92434 1.15833 1.18034 0.86796 0.88222 1.05552 1.42265 1.09122 1.03070 1.75846 1.16074 0.84839 0.81145 0.78422 1.90746 1.24118 1.75471 1.58947 1.47696 1.05178 1.07732 1.75039 1.21790 0.81658 0.98124 0.99962 1.21827 1.01384 0.96168 0.96932 1.21501 0.96772 0.94625 1.01189 1.18930 0.92404 0.94583 0.92232 0.99575 1.21495 0.92684 0.92184 1.51051 0.91842 1.25898 0.95489 1.02996 0.94525 1.70092 0.97930 1.36824 1.50416 0.85537 0.77656 0.80140 0.78207 1.20023 1.21296 1.18768 1.21685 1.03694 0.74625 0.97734 1.19285 0.92604 0.88637 1.29045 1.19636 0.87093 0.81111 0.70777 1.90810 1.28042 1.76967 1.50467 1.84486 1.44041 1.17308 1.85692 1.22904 0.87638 0.93599 0.97328 0.88754 0.85695 0.89713 0.81424 0.74247 0.89728 0.89707 0.87695 0.93416 0.92114 0.92665 0.93110 0.94423 0.90124 0.70802 0.75133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 11.03 127.77 1.41 2.08 16 2 N -0.42 -8.96 3.09 -546.12 -1.69 -10.65 16 3 C -0.07 -2.16 10.25 83.16 0.85 -1.31 16 4 C 0.11 4.02 7.13 39.30 0.28 4.30 16 5 N -0.65 -25.10 5.37 -312.81 -1.68 -26.78 16 6 C 0.69 31.81 8.26 179.06 1.48 33.29 16 7 O -0.61 -32.35 13.02 -4.06 -0.05 -32.40 16 8 N -0.62 -27.45 2.98 -837.72 -2.49 -29.94 16 9 C 0.11 3.59 6.40 86.22 0.55 4.15 16 10 C -0.13 -4.13 6.06 30.53 0.19 -3.94 16 11 C -0.10 -4.17 5.11 30.62 0.16 -4.01 16 12 C 0.04 1.97 2.25 -11.46 -0.03 1.95 16 13 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 14 C -0.54 -29.97 8.56 25.60 0.22 -29.75 16 15 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 16 C 0.01 0.59 5.30 84.65 0.45 1.04 16 17 N -0.91 -55.99 11.39 21.45 0.24 -55.74 16 18 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 C 0.14 7.54 5.39 86.36 0.47 8.00 16 23 C -0.29 -7.60 6.33 -18.76 -0.12 -7.72 16 24 C 0.57 13.97 8.32 70.11 0.58 14.55 16 25 O -0.57 -17.47 16.35 19.64 0.32 -17.15 16 26 O -0.50 -7.41 13.28 -57.09 -0.76 -8.16 16 27 C 0.13 2.30 11.20 84.21 0.94 3.24 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.12 0.43 8.13 -2.39 -0.02 0.41 16 30 H 0.08 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.17 6.70 5.87 -2.91 -0.02 6.68 16 32 H 0.42 14.69 4.79 -92.71 -0.44 14.25 16 33 H 0.08 2.52 5.57 -2.39 -0.01 2.50 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.06 2.32 8.14 -2.38 -0.02 2.31 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 4.94 5.15 -2.38 -0.01 4.93 16 42 H 0.43 2.55 9.11 -74.05 -0.67 1.87 16 43 H 0.23 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -82.58 353.93 3.30 -79.28 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.05 Total: 29.02 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 7.43 Total: 25.87 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -5.62 Total: -123.12 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.49 Total: -57.71 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -82.58 3.30 -79.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574213776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.124 kcal (2) G-P(sol) polarization free energy of solvation -82.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds