Wall clock time and date at job start Tue Mar 31 2020 13:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99685 * 2 1 4 4 C 1.52995 * 109.46712 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.51162 * 59.99638 * 4 3 2 6 6 O 1.21280 * 120.00477 * 94.90954 * 5 4 3 7 7 N 1.34774 * 120.00086 * 274.63650 * 5 4 3 8 8 C 1.39271 * 120.00627 * 175.15715 * 7 5 4 9 9 C 1.39665 * 119.57895 * 185.43489 * 8 7 5 10 10 C 1.38655 * 119.49544 * 179.72921 * 9 8 7 11 11 C 1.38343 * 118.67104 * 0.52881 * 10 9 8 12 12 C 1.40585 * 119.12813 * 359.73382 * 11 10 9 13 13 C 1.41336 * 119.78777 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00098 * 0.02562 * 13 12 11 15 15 C 1.40029 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.30747 * 119.99764 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00363 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47068 * 59.99962 * 17 15 13 19 19 H 1.48496 * 109.47056 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46698 * 300.00460 * 17 15 13 21 21 N 1.31913 * 119.57114 * 5.69823 * 8 7 5 22 22 C 1.53104 * 109.53990 * 180.10544 * 4 3 2 23 23 N 1.47013 * 109.25877 * 176.80382 * 22 4 3 24 24 C 1.47019 * 110.75172 * 301.38230 * 23 22 4 25 25 C 1.53099 * 109.25828 * 58.61785 * 24 23 22 26 26 O 1.43016 * 109.50591 * 299.90388 * 4 3 2 27 27 H 1.09000 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47131 * 300.00261 * 1 2 3 29 29 H 1.08996 * 109.46785 * 60.00627 * 1 2 3 30 30 H 1.08997 * 109.47751 * 59.99197 * 3 2 1 31 31 H 1.09002 * 109.46751 * 299.99626 * 3 2 1 32 32 H 0.97001 * 119.99827 * 355.16457 * 7 5 4 33 33 H 1.08003 * 120.25451 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.66793 * 180.23685 * 10 9 8 35 35 H 1.07996 * 120.43846 * 179.74967 * 11 10 9 36 36 H 0.96999 * 120.00032 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.50455 * 296.73339 * 22 4 3 38 38 H 1.08997 * 109.51023 * 56.86973 * 22 4 3 39 39 H 1.00905 * 110.99970 * 65.15296 * 23 22 4 40 40 H 1.08996 * 109.50520 * 298.68276 * 24 23 22 41 41 H 1.09004 * 109.50475 * 178.54805 * 24 23 22 42 42 H 1.08993 * 109.51146 * 183.21664 * 25 24 23 43 43 H 1.09003 * 109.54233 * 63.10521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9806 0.4371 -1.2310 6 8 4.3167 1.0479 -2.2234 7 7 4.0104 -0.9103 -1.2269 8 6 4.3242 -1.6036 -2.3933 9 6 4.2417 -2.9977 -2.4101 10 6 4.5491 -3.6858 -3.5739 11 6 4.9415 -2.9647 -4.6874 12 6 5.0104 -1.5629 -4.6055 13 6 5.4102 -0.8124 -5.7344 14 1 5.6612 -1.3159 -6.6563 15 6 5.4809 0.5839 -5.6577 16 7 5.1776 1.1935 -4.5414 17 14 6.0100 1.5759 -7.1495 18 1 5.0680 1.3254 -8.2699 19 1 6.0034 3.0216 -6.8103 20 1 7.3797 1.1689 -7.5540 21 7 4.7006 -0.9353 -3.4665 22 6 4.1598 2.5826 0.0020 23 7 5.6228 2.4600 0.0788 24 6 6.0214 1.7276 1.2896 25 6 5.3784 0.3383 1.2741 26 8 3.9589 0.4768 1.1676 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8465 0.8898 31 1 1.6886 1.8463 -0.8901 32 1 3.8132 -1.3973 -0.4115 33 1 3.9369 -3.5355 -1.5244 34 1 4.4880 -4.7636 -3.6091 35 1 5.1914 -3.4719 -5.6075 36 1 5.2269 2.1607 -4.4881 37 1 3.8860 3.1052 -0.9145 38 1 3.7958 3.1422 0.8636 39 1 5.9926 2.0178 -0.7494 40 1 5.6871 2.2736 2.1718 41 1 7.1065 1.6262 1.3130 42 1 5.6246 -0.1871 2.1967 43 1 5.7538 -0.2277 0.4215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578978602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:38 Heat of formation + Delta-G solvation = -50.660410 kcal Electronic energy + Delta-G solvation = -29118.507045 eV Core-core repulsion = 25165.394129 eV Total energy + Delta-G solvation = -3953.112915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70672 -38.50218 -37.54373 -37.02064 -34.70279 -33.91274 -32.92277 -32.19556 -30.28832 -29.05188 -28.03732 -26.32825 -25.58026 -24.53151 -23.67583 -22.30312 -21.48801 -20.67974 -19.03083 -17.78982 -17.10785 -16.58137 -16.48440 -16.04121 -15.71397 -15.40509 -15.06253 -14.75563 -14.60882 -14.40311 -13.94994 -13.83949 -13.64948 -13.42391 -12.85756 -12.68336 -12.31162 -12.20272 -12.06012 -11.82238 -11.75768 -11.33593 -11.23149 -11.12343 -10.97267 -10.96028 -10.65656 -10.56247 -10.45621 -9.93972 -9.69209 -9.62710 -8.99285 -8.88787 -8.22480 -7.94899 -7.20130 -6.92958 -6.13995 -4.39020 2.73757 3.05483 3.16596 3.18467 3.27709 3.42881 3.62695 3.72888 3.88971 4.06501 4.32187 4.79451 4.91235 4.98198 5.05576 5.11670 5.23642 5.27115 5.31772 5.38684 5.43464 5.48477 5.58628 5.69279 5.75027 5.85693 5.97422 6.05245 6.13360 6.52688 6.69488 6.84292 6.87096 6.91401 6.99636 7.16021 7.23818 7.38854 7.57676 7.64819 7.83167 8.08073 8.20667 8.48947 8.73752 9.05365 9.20885 10.25015 10.48300 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.005473 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.529807 B = 5115.247414 C = 5938.551257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.375 6.375 3 C 0.084 3.916 4 C 0.063 3.937 5 C 0.462 3.538 6 O -0.406 6.406 7 N -0.647 5.647 8 C 0.371 3.629 9 C -0.354 4.354 10 C -0.037 4.037 11 C -0.306 4.306 12 C 0.271 3.729 13 C -0.426 4.426 14 H 0.081 0.919 15 C 0.060 3.940 16 N -0.658 5.658 17 Si 0.895 3.105 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.267 1.267 21 N -0.473 5.473 22 C 0.054 3.946 23 N -0.678 5.678 24 C 0.021 3.979 25 C 0.011 3.989 26 O -0.359 6.359 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.272 0.728 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.359 0.641 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 2.998 12.018 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.293 6.293 3 C 0.007 3.993 4 C 0.018 3.982 5 C 0.242 3.758 6 O -0.271 6.271 7 N -0.293 5.293 8 C 0.133 3.867 9 C -0.380 4.380 10 C -0.061 4.061 11 C -0.329 4.329 12 C 0.146 3.854 13 C -0.457 4.457 14 H 0.099 0.901 15 C -0.169 4.169 16 N -0.276 5.276 17 Si 0.720 3.280 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.192 1.192 21 N -0.192 5.192 22 C -0.077 4.077 23 N -0.308 5.308 24 C -0.109 4.109 25 C -0.067 4.067 26 O -0.277 6.277 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.240 0.760 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.180 0.820 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.876 5.072 11.818 13.432 hybrid contribution -0.345 -1.565 -0.548 1.694 sum -4.221 3.507 11.270 12.535 Atomic orbital electron populations 1.22722 0.81094 1.02844 0.99639 1.87980 1.19493 1.26536 1.95324 1.22355 0.89643 0.86073 1.01280 1.22865 0.95048 0.94872 0.85395 1.20920 0.81261 0.83636 0.89967 1.91170 1.38943 1.65961 1.30993 1.43324 1.68163 1.06359 1.11489 1.18667 0.93188 0.87337 0.87521 1.20520 1.24889 0.92822 0.99723 1.20560 0.95573 0.97158 0.92789 1.21620 1.17015 0.95727 0.98524 1.18379 0.88261 0.88276 0.90477 1.19524 1.38145 0.91161 0.96872 0.90106 1.26147 0.95411 0.98689 0.96683 1.70303 1.24650 1.09699 1.22981 0.86593 0.79993 0.78855 0.82561 1.19268 1.20377 1.19221 1.68699 1.17958 1.35131 0.97403 1.22350 0.88217 0.92923 1.04206 1.60853 1.09272 1.54676 1.06043 1.22666 1.00818 0.92838 0.94627 1.23443 0.81810 0.98270 1.03167 1.88116 1.21580 1.76181 1.41846 0.89570 0.94278 0.94122 0.91943 0.91197 0.76034 0.89143 0.88687 0.88634 0.91635 0.88196 0.89716 0.82045 0.90106 0.89678 0.88083 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.76 10.08 -44.67 -0.45 -6.21 16 3 C 0.08 1.18 5.05 37.15 0.19 1.37 16 4 C 0.06 0.99 0.83 -91.72 -0.08 0.91 16 5 C 0.46 9.30 4.63 -10.99 -0.05 9.25 16 6 O -0.41 -9.67 11.06 5.56 0.06 -9.61 16 7 N -0.65 -13.48 4.45 -11.40 -0.05 -13.53 16 8 C 0.37 9.23 7.43 -154.97 -1.15 8.08 16 9 C -0.35 -8.23 9.95 -38.89 -0.39 -8.62 16 10 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 11 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 12 C 0.27 7.64 6.55 -85.00 -0.56 7.08 16 13 C -0.43 -11.70 9.14 -37.73 -0.34 -12.04 16 14 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 15 C 0.06 1.55 5.50 -17.34 -0.10 1.46 16 16 N -0.66 -17.73 9.00 55.55 0.50 -17.23 16 17 Si 0.90 19.15 29.56 -169.99 -5.02 14.13 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 N -0.47 -13.18 5.74 -10.25 -0.06 -13.24 16 22 C 0.05 0.77 5.18 -3.71 -0.02 0.75 16 23 N -0.68 -10.04 6.88 -113.49 -0.78 -10.82 16 24 C 0.02 0.25 6.76 -3.71 -0.03 0.23 16 25 C 0.01 0.15 6.60 37.21 0.25 0.40 16 26 O -0.36 -5.31 9.46 -44.67 -0.42 -5.73 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 7.56 8.02 -40.82 -0.33 7.24 16 33 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 37 H 0.10 1.51 7.76 -51.93 -0.40 1.11 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.36 6.32 7.49 -39.29 -0.29 6.03 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -31.66 349.75 -8.89 -40.55 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -5.99 Total: 15.48 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.94 Total: 0.94 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.39 Total: -54.82 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.81 Total: -21.56 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.66 -8.89 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578978602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.106 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds