Wall clock time and date at job start Tue Mar 31 2020 13:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99685 * 2 1 4 4 C 1.52995 * 109.46712 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.51162 * 59.99638 * 4 3 2 6 6 O 1.21280 * 120.00477 * 94.90954 * 5 4 3 7 7 N 1.34774 * 120.00086 * 274.63650 * 5 4 3 8 8 C 1.39271 * 120.00627 * 175.15715 * 7 5 4 9 9 C 1.39665 * 119.57895 * 185.43489 * 8 7 5 10 10 C 1.38655 * 119.49544 * 179.72921 * 9 8 7 11 11 C 1.38343 * 118.67104 * 0.52881 * 10 9 8 12 12 C 1.40585 * 119.12813 * 359.73382 * 11 10 9 13 13 C 1.41336 * 119.78777 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00098 * 0.02562 * 13 12 11 15 15 C 1.40029 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.30747 * 119.99764 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00363 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47068 * 59.99962 * 17 15 13 19 19 H 1.48496 * 109.47056 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46698 * 300.00460 * 17 15 13 21 21 N 1.31913 * 119.57114 * 5.69823 * 8 7 5 22 22 C 1.53104 * 109.53990 * 180.10544 * 4 3 2 23 23 N 1.47013 * 109.25877 * 176.80382 * 22 4 3 24 24 C 1.47019 * 110.75172 * 301.38230 * 23 22 4 25 25 C 1.53099 * 109.25828 * 58.61785 * 24 23 22 26 26 O 1.43016 * 109.50591 * 299.90388 * 4 3 2 27 27 H 1.09000 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47131 * 300.00261 * 1 2 3 29 29 H 1.08996 * 109.46785 * 60.00627 * 1 2 3 30 30 H 1.08997 * 109.47751 * 59.99197 * 3 2 1 31 31 H 1.09002 * 109.46751 * 299.99626 * 3 2 1 32 32 H 0.97001 * 119.99827 * 355.16457 * 7 5 4 33 33 H 1.08003 * 120.25451 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.66793 * 180.23685 * 10 9 8 35 35 H 1.07996 * 120.43846 * 179.74967 * 11 10 9 36 36 H 0.96999 * 120.00032 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.50455 * 296.73339 * 22 4 3 38 38 H 1.08997 * 109.51023 * 56.86973 * 22 4 3 39 39 H 1.00905 * 110.99970 * 65.15296 * 23 22 4 40 40 H 1.08996 * 109.50520 * 298.68276 * 24 23 22 41 41 H 1.09004 * 109.50475 * 178.54805 * 24 23 22 42 42 H 1.08993 * 109.51146 * 183.21664 * 25 24 23 43 43 H 1.09003 * 109.54233 * 63.10521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9806 0.4371 -1.2310 6 8 4.3167 1.0479 -2.2234 7 7 4.0104 -0.9103 -1.2269 8 6 4.3242 -1.6036 -2.3933 9 6 4.2417 -2.9977 -2.4101 10 6 4.5491 -3.6858 -3.5739 11 6 4.9415 -2.9647 -4.6874 12 6 5.0104 -1.5629 -4.6055 13 6 5.4102 -0.8124 -5.7344 14 1 5.6612 -1.3159 -6.6563 15 6 5.4809 0.5839 -5.6577 16 7 5.1776 1.1935 -4.5414 17 14 6.0100 1.5759 -7.1495 18 1 5.0680 1.3254 -8.2699 19 1 6.0034 3.0216 -6.8103 20 1 7.3797 1.1689 -7.5540 21 7 4.7006 -0.9353 -3.4665 22 6 4.1598 2.5826 0.0020 23 7 5.6228 2.4600 0.0788 24 6 6.0214 1.7276 1.2896 25 6 5.3784 0.3383 1.2741 26 8 3.9589 0.4768 1.1676 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8465 0.8898 31 1 1.6886 1.8463 -0.8901 32 1 3.8132 -1.3973 -0.4115 33 1 3.9369 -3.5355 -1.5244 34 1 4.4880 -4.7636 -3.6091 35 1 5.1914 -3.4719 -5.6075 36 1 5.2269 2.1607 -4.4881 37 1 3.8860 3.1052 -0.9145 38 1 3.7958 3.1422 0.8636 39 1 5.9926 2.0178 -0.7494 40 1 5.6871 2.2736 2.1718 41 1 7.1065 1.6262 1.3130 42 1 5.6246 -0.1871 2.1967 43 1 5.7538 -0.2277 0.4215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578978602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:37 Heat of formation + Delta-G solvation = -73.866534 kcal Electronic energy + Delta-G solvation = -29119.513338 eV Core-core repulsion = 25165.394129 eV Total energy + Delta-G solvation = -3954.119208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04618 -40.21973 -38.67300 -38.59699 -36.16614 -35.46697 -34.70649 -33.36815 -32.22224 -30.92041 -29.09719 -27.55560 -27.29413 -25.61051 -25.18358 -23.56256 -23.26964 -22.33763 -20.57580 -19.53030 -18.52087 -18.08542 -17.63245 -17.46812 -16.89317 -16.55123 -16.48540 -16.30330 -16.07346 -15.88075 -15.58914 -15.39967 -15.16353 -14.68764 -14.63460 -13.99155 -13.81215 -13.69883 -13.26344 -13.20031 -12.95810 -12.84027 -12.74508 -12.58160 -12.39072 -12.32759 -12.27118 -12.07620 -11.82370 -11.74092 -11.46341 -10.85345 -10.72941 -10.45209 -9.90097 -9.40627 -9.06504 -8.81361 -8.05430 -6.41868 0.88249 1.22916 1.40573 1.51491 1.52658 1.94047 2.18249 2.26898 2.55780 2.63473 2.98988 3.17557 3.60374 3.70229 3.87326 4.04542 4.06588 4.16397 4.28037 4.32226 4.34688 4.40512 4.47143 4.50632 4.56538 4.68601 4.73119 4.78279 4.83807 4.87031 4.94268 4.94506 5.04644 5.29044 5.66172 5.76997 5.84131 5.89558 5.91422 6.08769 6.14316 6.15972 6.34892 6.71095 6.81932 7.07728 7.57894 8.31927 8.56464 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.005473 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.529807 B = 5115.247414 C = 5938.551257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.083 3.917 4 C 0.076 3.924 5 C 0.457 3.543 6 O -0.446 6.446 7 N -0.640 5.640 8 C 0.351 3.649 9 C -0.352 4.352 10 C -0.033 4.033 11 C -0.330 4.330 12 C 0.237 3.763 13 C -0.464 4.464 14 H 0.084 0.916 15 C 0.014 3.986 16 N -0.685 5.685 17 Si 0.973 3.027 18 H -0.263 1.263 19 H -0.272 1.272 20 H -0.262 1.262 21 N -0.501 5.501 22 C 0.058 3.942 23 N -0.685 5.685 24 C 0.023 3.977 25 C 0.011 3.989 26 O -0.357 6.357 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.272 0.728 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.338 0.662 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 3.180 13.843 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.006 3.994 4 C 0.031 3.969 5 C 0.239 3.761 6 O -0.313 6.313 7 N -0.287 5.287 8 C 0.113 3.887 9 C -0.377 4.377 10 C -0.058 4.058 11 C -0.353 4.353 12 C 0.111 3.889 13 C -0.494 4.494 14 H 0.102 0.898 15 C -0.212 4.212 16 N -0.304 5.304 17 Si 0.794 3.206 18 H -0.188 1.188 19 H -0.197 1.197 20 H -0.186 1.186 21 N -0.221 5.221 22 C -0.073 4.073 23 N -0.313 5.313 24 C -0.107 4.107 25 C -0.067 4.067 26 O -0.276 6.276 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.139 0.861 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.156 0.844 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.150 0.850 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.427 5.234 13.701 15.320 hybrid contribution -0.217 -1.741 -0.977 2.008 sum -4.644 3.493 12.724 13.988 Atomic orbital electron populations 1.22903 0.79309 1.03743 1.00801 1.87927 1.21552 1.27244 1.95568 1.22434 0.88348 0.86074 1.02559 1.22751 0.96240 0.94587 0.83335 1.21802 0.79890 0.83224 0.91149 1.91159 1.40417 1.66552 1.33151 1.43357 1.67824 1.06893 1.10643 1.19159 0.92888 0.88581 0.88096 1.20937 1.23393 0.92497 1.00877 1.20991 0.93826 0.99118 0.91817 1.21801 1.18316 0.95170 0.99976 1.18883 0.89043 0.89801 0.91162 1.19850 1.39951 0.92417 0.97219 0.89773 1.26965 0.95159 0.99235 0.99839 1.70480 1.25314 1.09710 1.24921 0.85411 0.79568 0.77146 0.78438 1.18766 1.19668 1.18623 1.68683 1.18986 1.36274 0.98138 1.22400 0.87945 0.92182 1.04792 1.60890 1.09543 1.54884 1.06007 1.22784 1.01558 0.92207 0.94124 1.23570 0.80977 0.98851 1.03345 1.88125 1.22509 1.76127 1.40799 0.88906 0.91692 0.94329 0.88530 0.91912 0.74911 0.86084 0.84768 0.87753 0.91757 0.89772 0.86603 0.84377 0.87884 0.88587 0.84999 0.95214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -11.83 10.08 -139.95 -1.41 -13.25 16 3 C 0.08 2.21 5.05 71.98 0.36 2.58 16 4 C 0.08 2.30 0.83 -11.51 -0.01 2.29 16 5 C 0.46 18.73 4.63 87.66 0.41 19.13 16 6 O -0.45 -22.17 11.06 -3.03 -0.03 -22.20 16 7 N -0.64 -26.92 4.45 -308.37 -1.37 -28.29 16 8 C 0.35 17.76 7.43 133.25 0.99 18.74 16 9 C -0.35 -16.06 9.95 22.71 0.23 -15.83 16 10 C -0.03 -1.52 10.15 22.39 0.23 -1.29 16 11 C -0.33 -17.07 9.83 22.87 0.22 -16.84 16 12 C 0.24 13.82 6.55 40.20 0.26 14.08 16 13 C -0.46 -26.45 9.14 23.47 0.21 -26.24 16 14 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 15 C 0.01 0.75 5.50 85.29 0.47 1.22 16 16 N -0.69 -38.54 9.00 21.84 0.20 -38.35 16 17 Si 0.97 40.47 29.56 68.60 2.03 42.50 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 21 N -0.50 -28.96 5.74 -186.35 -1.07 -30.03 16 22 C 0.06 1.58 5.18 86.32 0.45 2.03 16 23 N -0.68 -19.90 6.88 -512.98 -3.53 -23.42 16 24 C 0.02 0.51 6.76 86.31 0.58 1.10 16 25 C 0.01 0.26 6.60 72.02 0.47 0.74 16 26 O -0.36 -9.84 9.46 -139.95 -1.32 -11.16 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.41 15.29 8.02 -92.71 -0.74 14.55 16 33 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 35 H 0.10 5.03 8.06 -2.91 -0.02 5.00 16 36 H 0.27 14.36 8.29 -92.71 -0.77 13.59 16 37 H 0.08 2.58 7.76 -2.39 -0.02 2.56 16 38 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.34 12.30 7.49 -89.69 -0.67 11.63 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.03 0.92 6.74 -2.39 -0.02 0.90 16 Total: -1.00 -71.62 349.75 -0.75 -72.38 By element: Atomic # 1 Polarization: 48.65 SS G_CDS: -0.37 Total: 48.28 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 6.13 Total: 3.55 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -5.77 Total: -120.09 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -2.77 Total: -46.61 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -71.62 -0.75 -72.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578978602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.491 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds