Wall clock time and date at job start Tue Mar 31 2020 13:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36086 * 116.99651 * 2 1 4 4 C 1.38478 * 120.01454 * 0.02562 * 3 2 1 5 5 C 1.38246 * 120.08920 * 179.97438 * 4 3 2 6 6 C 1.38836 * 120.10369 * 0.02562 * 5 4 3 7 7 N 1.40139 * 119.98812 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99697 * 146.81332 * 7 6 5 9 9 O 1.21588 * 120.00007 * 354.68799 * 8 7 6 10 10 N 1.34774 * 119.99362 * 174.68307 * 8 7 6 11 11 C 1.47021 * 125.65077 * 0.04533 * 10 8 7 12 12 C 1.54330 * 107.26767 * 181.02045 * 11 10 8 13 13 C 1.55154 * 102.94483 * 22.19329 * 12 11 10 14 14 O 1.42902 * 111.00266 * 82.56827 * 13 12 11 15 15 C 1.50701 * 111.03563 * 206.40794 * 13 12 11 16 16 H 1.07997 * 120.00338 * 356.79426 * 15 13 12 17 17 C 1.37877 * 119.99705 * 176.79879 * 15 13 12 18 18 N 1.31523 * 120.00118 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00107 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46796 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47107 * 119.99552 * 19 17 15 22 22 H 1.48498 * 109.46952 * 239.99897 * 19 17 15 23 23 C 1.47427 * 125.64636 * 179.97438 * 10 8 7 24 24 C 1.38787 * 120.02351 * 0.25102 * 6 5 4 25 25 C 1.38673 * 119.91126 * 359.45031 * 24 6 5 26 26 N 1.39952 * 120.05212 * 180.27324 * 25 24 6 27 27 H 1.08996 * 109.47203 * 300.00342 * 1 2 3 28 28 H 1.09005 * 109.47165 * 59.99734 * 1 2 3 29 29 H 1.08995 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.95954 * 359.97438 * 4 3 2 31 31 H 1.07994 * 119.94904 * 179.97438 * 5 4 3 32 32 H 0.97001 * 119.99996 * 326.81573 * 7 6 5 33 33 H 1.08996 * 109.88385 * 300.43610 * 11 10 8 34 34 H 1.09004 * 109.88208 * 61.60556 * 11 10 8 35 35 H 1.08997 * 110.72214 * 263.82737 * 12 11 10 36 36 H 1.09003 * 110.71628 * 140.55838 * 12 11 10 37 37 H 0.96704 * 113.99785 * 186.34770 * 14 13 12 38 38 H 0.96995 * 120.00114 * 179.97438 * 18 17 15 39 39 H 1.09004 * 110.36446 * 37.07401 * 23 10 8 40 40 H 1.08996 * 110.46182 * 274.80090 * 23 10 8 41 41 H 1.07994 * 120.04443 * 179.73056 * 24 6 5 42 42 H 0.96999 * 119.99967 * 180.29703 * 26 25 24 43 43 H 0.96995 * 120.00360 * 0.30041 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2928 2.3741 0.0005 5 6 1.9187 3.6067 0.0011 6 6 3.3049 3.6838 0.0005 7 7 3.9369 4.9346 0.0005 8 6 5.1130 5.0953 0.6390 9 8 5.5780 4.1836 1.2954 10 7 5.7734 6.2668 0.5498 11 6 5.3272 7.4467 -0.2052 12 6 6.4103 8.5335 -0.0390 13 6 7.6727 7.7120 0.3336 14 8 8.3044 7.1853 -0.8350 15 6 8.6392 8.5411 1.1395 16 1 8.4251 9.5812 1.3360 17 6 9.7968 7.9716 1.6260 18 7 10.0574 6.7048 1.3870 19 14 10.9946 8.9991 2.6256 20 1 10.4732 10.3838 2.7521 21 1 11.1504 8.4029 3.9766 22 1 12.3126 9.0275 1.9420 23 6 7.0623 6.5777 1.1945 24 6 4.0650 2.5226 -0.0058 25 6 3.4380 1.2857 -0.0001 26 7 4.2016 0.1128 -0.0007 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2143 2.3170 0.0005 31 1 1.3285 4.5111 0.0011 32 1 3.5280 5.6846 -0.4589 33 1 5.2162 7.1922 -1.2592 34 1 4.3782 7.8050 0.1937 35 1 6.1466 9.2210 0.7646 36 1 6.5628 9.0721 -0.9743 37 1 9.0399 6.5859 -0.6482 38 1 10.8719 6.3043 1.7289 39 1 7.7122 5.7026 1.1847 40 1 6.9041 6.9203 2.2170 41 1 5.1433 2.5821 -0.0106 42 1 3.7622 -0.7519 -0.0010 43 1 5.1701 0.1646 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579229337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:15 Heat of formation + Delta-G solvation = -76.140664 kcal Electronic energy + Delta-G solvation = -27132.940582 eV Core-core repulsion = 23178.722760 eV Total energy + Delta-G solvation = -3954.217822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51094 -39.61350 -37.93634 -36.88667 -34.98193 -34.29045 -33.25968 -32.20494 -30.33357 -29.09384 -28.63467 -27.82655 -26.95425 -25.02914 -23.01563 -22.36876 -21.63118 -19.69693 -19.56417 -18.14641 -17.90264 -17.15255 -17.09730 -16.73417 -15.76075 -15.50803 -15.25695 -15.09893 -14.90979 -14.51298 -14.34867 -13.96129 -13.65545 -13.17141 -13.04735 -12.96011 -12.84732 -12.60773 -12.14811 -11.98233 -11.66603 -11.59026 -11.28640 -11.08996 -11.06522 -10.86533 -10.76564 -10.63021 -10.46304 -10.20585 -9.64766 -9.56899 -9.40873 -8.70674 -8.39375 -8.02438 -7.73880 -7.10163 -6.29390 -4.38524 1.51117 1.63677 2.99034 3.19780 3.26556 3.28561 3.31615 3.55602 3.95909 4.05494 4.24682 4.38719 4.81927 4.95886 4.97931 5.01351 5.19870 5.30294 5.36245 5.45805 5.60419 5.67262 5.72181 5.79181 5.95593 5.99118 6.06397 6.35937 6.44318 6.47326 6.53091 6.68981 6.84066 6.93053 7.08426 7.17452 7.21550 7.29269 7.55665 7.68923 7.73344 7.89486 8.01184 8.39973 8.65272 9.00284 9.30003 9.39601 10.78113 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026958 B = 0.002728 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.404104 B =10261.769349 C =10867.885327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.325 6.325 3 C 0.022 3.978 4 C -0.140 4.140 5 C -0.177 4.177 6 C 0.196 3.804 7 N -0.689 5.689 8 C 0.714 3.286 9 O -0.578 6.578 10 N -0.623 5.623 11 C 0.102 3.898 12 C -0.116 4.116 13 C 0.249 3.751 14 O -0.582 6.582 15 C -0.536 4.536 16 H 0.067 0.933 17 C 0.071 3.929 18 N -0.893 5.893 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.111 3.889 24 C -0.169 4.169 25 C 0.216 3.784 26 N -0.872 5.872 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.403 0.597 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.383 0.617 38 H 0.270 0.730 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.144 0.856 42 H 0.400 0.600 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.204 -8.311 -4.309 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.240 6.240 3 C -0.026 4.026 4 C -0.160 4.160 5 C -0.200 4.200 6 C 0.099 3.901 7 N -0.337 5.337 8 C 0.416 3.584 9 O -0.456 6.456 10 N -0.359 5.359 11 C -0.022 4.022 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.392 6.392 15 C -0.575 4.575 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.531 5.531 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.011 4.011 24 C -0.195 4.195 25 C 0.111 3.889 26 N -0.413 5.413 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.234 0.766 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.161 0.839 42 H 0.229 0.771 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.073 -8.900 -4.072 19.680 hybrid contribution 0.777 0.423 0.696 1.125 sum -16.297 -8.478 -3.377 18.678 Atomic orbital electron populations 1.22915 0.79052 1.03229 1.01005 1.85940 1.20710 1.26807 1.90547 1.18305 0.90252 0.84671 1.09417 1.20657 0.99167 0.91205 1.04942 1.20353 0.92172 0.97500 1.09951 1.17125 0.90558 0.84196 0.98173 1.42745 1.22852 1.11080 1.56980 1.15517 0.80005 0.82690 0.80159 1.90905 1.68332 1.40583 1.45737 1.47972 1.24434 1.11066 1.52437 1.22000 0.97772 0.87016 0.95397 1.22597 0.94413 0.96332 1.02030 1.19631 0.88505 0.88193 0.82858 1.86092 1.51975 1.67440 1.33653 1.21495 1.04860 0.97439 1.33688 0.91437 1.25083 0.97865 0.95024 0.95270 1.69666 1.26414 1.11356 1.45704 0.86345 0.80593 0.80315 0.79623 1.19586 1.20774 1.20760 1.23227 0.80405 1.01199 0.96254 1.20487 1.01033 0.88778 1.09181 1.16899 0.87119 0.87615 0.97259 1.42280 1.08357 1.05212 1.85442 0.93052 0.93071 0.88848 0.85499 0.85973 0.76125 0.92359 0.92948 0.90353 0.90653 0.76629 0.92006 0.89723 0.92254 0.83859 0.77144 0.77211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.33 -3.73 9.74 -20.01 -0.19 -3.92 16 3 C 0.02 0.29 6.70 -39.09 -0.26 0.02 16 4 C -0.14 -1.65 9.03 -39.49 -0.36 -2.01 16 5 C -0.18 -2.24 9.96 -39.36 -0.39 -2.64 16 6 C 0.20 3.04 6.28 -83.63 -0.53 2.52 16 7 N -0.69 -10.91 5.30 -14.20 -0.08 -10.98 16 8 C 0.71 14.43 8.23 -86.92 -0.71 13.72 16 9 O -0.58 -13.67 14.29 5.29 0.08 -13.59 16 10 N -0.62 -12.62 3.33 -176.22 -0.59 -13.21 16 11 C 0.10 1.71 6.16 -3.06 -0.02 1.69 16 12 C -0.12 -2.21 6.13 -24.89 -0.15 -2.37 16 13 C 0.25 5.89 0.87 -89.61 -0.08 5.81 16 14 O -0.58 -14.63 13.15 -35.23 -0.46 -15.10 16 15 C -0.54 -13.71 8.26 -34.44 -0.28 -14.00 16 16 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 17 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 18 N -0.89 -23.58 10.72 55.43 0.59 -22.98 16 19 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 C 0.11 2.63 5.50 -2.52 -0.01 2.61 16 24 C -0.17 -2.78 8.50 -39.22 -0.33 -3.11 16 25 C 0.22 3.12 6.77 -83.59 -0.57 2.55 16 26 N -0.87 -10.37 9.09 32.50 0.30 -10.07 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.13 1.13 6.29 -52.49 -0.33 0.80 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.40 5.15 7.82 -40.82 -0.32 4.83 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.38 9.96 7.32 45.56 0.33 10.29 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.08 2.26 7.47 -51.93 -0.39 1.87 16 40 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 41 H 0.14 2.67 6.42 -52.49 -0.34 2.33 16 42 H 0.40 4.11 8.19 -40.82 -0.33 3.77 16 43 H 0.40 4.37 8.84 -40.82 -0.36 4.01 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -30.87 354.40 -7.86 -38.73 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -5.02 Total: 22.86 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -2.80 Total: 7.77 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.23 Total: -57.25 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.58 Total: -32.61 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.87 -7.86 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579229337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.412 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds