Wall clock time and date at job start Tue Mar 31 2020 13:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36086 * 116.99651 * 2 1 4 4 C 1.38478 * 120.01454 * 0.02562 * 3 2 1 5 5 C 1.38246 * 120.08920 * 179.97438 * 4 3 2 6 6 C 1.38836 * 120.10369 * 0.02562 * 5 4 3 7 7 N 1.40139 * 119.98812 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99697 * 146.81332 * 7 6 5 9 9 O 1.21588 * 120.00007 * 354.68799 * 8 7 6 10 10 N 1.34774 * 119.99362 * 174.68307 * 8 7 6 11 11 C 1.47021 * 125.65077 * 0.04533 * 10 8 7 12 12 C 1.54330 * 107.26767 * 181.02045 * 11 10 8 13 13 C 1.55154 * 102.94483 * 22.19329 * 12 11 10 14 14 O 1.42902 * 111.00266 * 82.56827 * 13 12 11 15 15 C 1.50701 * 111.03563 * 206.40794 * 13 12 11 16 16 H 1.07997 * 120.00338 * 356.79426 * 15 13 12 17 17 C 1.37877 * 119.99705 * 176.79879 * 15 13 12 18 18 N 1.31523 * 120.00118 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00107 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46796 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47107 * 119.99552 * 19 17 15 22 22 H 1.48498 * 109.46952 * 239.99897 * 19 17 15 23 23 C 1.47427 * 125.64636 * 179.97438 * 10 8 7 24 24 C 1.38787 * 120.02351 * 0.25102 * 6 5 4 25 25 C 1.38673 * 119.91126 * 359.45031 * 24 6 5 26 26 N 1.39952 * 120.05212 * 180.27324 * 25 24 6 27 27 H 1.08996 * 109.47203 * 300.00342 * 1 2 3 28 28 H 1.09005 * 109.47165 * 59.99734 * 1 2 3 29 29 H 1.08995 * 109.47367 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.95954 * 359.97438 * 4 3 2 31 31 H 1.07994 * 119.94904 * 179.97438 * 5 4 3 32 32 H 0.97001 * 119.99996 * 326.81573 * 7 6 5 33 33 H 1.08996 * 109.88385 * 300.43610 * 11 10 8 34 34 H 1.09004 * 109.88208 * 61.60556 * 11 10 8 35 35 H 1.08997 * 110.72214 * 263.82737 * 12 11 10 36 36 H 1.09003 * 110.71628 * 140.55838 * 12 11 10 37 37 H 0.96704 * 113.99785 * 186.34770 * 14 13 12 38 38 H 0.96995 * 120.00114 * 179.97438 * 18 17 15 39 39 H 1.09004 * 110.36446 * 37.07401 * 23 10 8 40 40 H 1.08996 * 110.46182 * 274.80090 * 23 10 8 41 41 H 1.07994 * 120.04443 * 179.73056 * 24 6 5 42 42 H 0.96999 * 119.99967 * 180.29703 * 26 25 24 43 43 H 0.96995 * 120.00360 * 0.30041 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2928 2.3741 0.0005 5 6 1.9187 3.6067 0.0011 6 6 3.3049 3.6838 0.0005 7 7 3.9369 4.9346 0.0005 8 6 5.1130 5.0953 0.6390 9 8 5.5780 4.1836 1.2954 10 7 5.7734 6.2668 0.5498 11 6 5.3272 7.4467 -0.2052 12 6 6.4103 8.5335 -0.0390 13 6 7.6727 7.7120 0.3336 14 8 8.3044 7.1853 -0.8350 15 6 8.6392 8.5411 1.1395 16 1 8.4251 9.5812 1.3360 17 6 9.7968 7.9716 1.6260 18 7 10.0574 6.7048 1.3870 19 14 10.9946 8.9991 2.6256 20 1 10.4732 10.3838 2.7521 21 1 11.1504 8.4029 3.9766 22 1 12.3126 9.0275 1.9420 23 6 7.0623 6.5777 1.1945 24 6 4.0650 2.5226 -0.0058 25 6 3.4380 1.2857 -0.0001 26 7 4.2016 0.1128 -0.0007 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2143 2.3170 0.0005 31 1 1.3285 4.5111 0.0011 32 1 3.5280 5.6846 -0.4589 33 1 5.2162 7.1922 -1.2592 34 1 4.3782 7.8050 0.1937 35 1 6.1466 9.2210 0.7646 36 1 6.5628 9.0721 -0.9743 37 1 9.0399 6.5859 -0.6482 38 1 10.8719 6.3043 1.7289 39 1 7.7122 5.7026 1.1847 40 1 6.9041 6.9203 2.2170 41 1 5.1433 2.5821 -0.0106 42 1 3.7622 -0.7519 -0.0010 43 1 5.1701 0.1646 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579229337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:14 Heat of formation + Delta-G solvation = -100.643988 kcal Electronic energy + Delta-G solvation = -27134.003126 eV Core-core repulsion = 23178.722760 eV Total energy + Delta-G solvation = -3955.280366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78774 -40.82096 -39.38664 -38.13737 -36.18805 -36.04020 -34.43814 -34.19097 -31.89774 -30.25955 -29.69500 -29.35270 -27.89838 -26.79453 -24.49059 -23.45877 -22.78750 -21.46962 -20.97811 -19.47051 -19.02406 -18.89862 -18.33579 -17.86079 -17.07075 -16.82998 -16.52121 -16.48877 -16.23633 -16.03873 -15.71498 -15.28364 -14.87494 -14.68718 -14.63700 -14.25344 -13.98866 -13.75611 -13.54693 -13.48188 -13.31700 -12.90546 -12.85640 -12.51700 -12.33416 -12.26345 -12.18404 -12.07822 -11.93513 -11.79032 -11.28583 -11.18057 -10.70561 -10.65540 -10.30890 -9.52474 -9.03668 -8.24725 -8.10983 -6.40995 0.42014 0.59615 1.40863 1.44617 1.55047 1.58233 2.07705 2.38590 2.46158 2.89808 2.93161 3.01979 3.11650 3.80319 3.92895 4.08893 4.17176 4.21551 4.33928 4.41465 4.49506 4.51727 4.62009 4.65923 4.71762 4.75552 4.84738 4.91627 5.05898 5.09699 5.21817 5.34306 5.37358 5.40027 5.45554 5.52210 5.77006 5.93183 6.05282 6.15116 6.30497 6.66325 6.72820 6.96518 6.99450 7.29650 7.36771 7.48921 8.81145 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026958 B = 0.002728 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.404104 B =10261.769349 C =10867.885327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.338 6.338 3 C 0.023 3.977 4 C -0.134 4.134 5 C -0.164 4.164 6 C 0.168 3.832 7 N -0.668 5.668 8 C 0.709 3.291 9 O -0.623 6.623 10 N -0.628 5.628 11 C 0.103 3.897 12 C -0.110 4.110 13 C 0.232 3.768 14 O -0.588 6.588 15 C -0.552 4.552 16 H 0.071 0.929 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.964 3.036 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.126 3.874 24 C -0.195 4.195 25 C 0.200 3.800 26 N -0.868 5.868 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.420 0.580 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.374 0.626 38 H 0.269 0.731 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.108 0.892 42 H 0.408 0.592 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.529 -7.462 -4.789 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.252 6.252 3 C -0.025 4.025 4 C -0.153 4.153 5 C -0.187 4.187 6 C 0.072 3.928 7 N -0.317 5.317 8 C 0.411 3.589 9 O -0.503 6.503 10 N -0.363 5.363 11 C -0.019 4.019 12 C -0.148 4.148 13 C 0.191 3.809 14 O -0.396 6.396 15 C -0.591 4.591 16 H 0.089 0.911 17 C -0.177 4.177 18 N -0.556 5.556 19 Si 0.790 3.210 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.207 1.207 23 C 0.002 3.998 24 C -0.221 4.221 25 C 0.094 3.906 26 N -0.409 5.409 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.133 0.867 30 H 0.181 0.819 31 H 0.172 0.828 32 H 0.259 0.741 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.223 0.777 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.126 0.874 42 H 0.238 0.762 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -20.470 -8.039 -4.596 22.467 hybrid contribution 1.703 0.027 0.827 1.894 sum -18.766 -8.012 -3.769 20.750 Atomic orbital electron populations 1.23266 0.76690 1.05194 1.02108 1.85938 1.23105 1.25962 1.90230 1.18445 0.89850 0.85964 1.08281 1.21080 1.00912 0.90188 1.03157 1.20661 0.90786 0.99216 1.08034 1.17397 0.91817 0.83397 1.00184 1.42410 1.21238 1.12019 1.56062 1.15699 0.80977 0.81987 0.80189 1.90873 1.69726 1.42014 1.47721 1.47878 1.23441 1.12321 1.52703 1.22210 0.98586 0.84877 0.96244 1.22603 0.92499 0.96691 1.02994 1.19884 0.89903 0.88549 0.82532 1.86083 1.51709 1.67251 1.34546 1.21840 1.05507 0.97802 1.33926 0.91105 1.25846 0.99571 0.95931 0.96304 1.69791 1.26695 1.12631 1.46506 0.85406 0.78475 0.79210 0.77925 1.18604 1.20994 1.20688 1.22744 0.81671 0.99449 0.95906 1.20330 0.99599 0.90541 1.11612 1.17035 0.88352 0.87465 0.97747 1.42262 1.08450 1.05109 1.85069 0.92061 0.91665 0.86713 0.81853 0.82834 0.74123 0.90712 0.88633 0.89062 0.89547 0.77700 0.92202 0.93960 0.93878 0.87376 0.76214 0.77088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -6.94 9.74 -94.53 -0.92 -7.86 16 3 C 0.02 0.57 6.70 22.59 0.15 0.72 16 4 C -0.13 -2.70 9.03 22.33 0.20 -2.50 16 5 C -0.16 -3.68 9.96 22.41 0.22 -3.46 16 6 C 0.17 5.09 6.28 38.09 0.24 5.32 16 7 N -0.67 -20.56 5.30 -317.10 -1.68 -22.25 16 8 C 0.71 29.22 8.23 179.05 1.47 30.69 16 9 O -0.62 -31.13 14.29 -3.99 -0.06 -31.18 16 10 N -0.63 -25.53 3.33 -829.70 -2.76 -28.29 16 11 C 0.10 3.20 6.16 86.73 0.53 3.74 16 12 C -0.11 -4.02 6.13 31.78 0.19 -3.83 16 13 C 0.23 11.10 0.87 -10.14 -0.01 11.09 16 14 O -0.59 -30.26 13.15 -148.98 -1.96 -32.22 16 15 C -0.55 -28.49 8.26 25.60 0.21 -28.28 16 16 H 0.07 3.52 7.78 -2.91 -0.02 3.49 16 17 C 0.02 1.26 5.30 84.65 0.45 1.71 16 18 N -0.92 -50.32 10.72 21.45 0.23 -50.09 16 19 Si 0.96 41.85 29.54 68.60 2.03 43.87 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.13 6.19 5.50 86.86 0.48 6.67 16 24 C -0.19 -6.65 8.50 22.51 0.19 -6.46 16 25 C 0.20 5.80 6.77 38.21 0.26 6.06 16 26 N -0.87 -21.23 9.09 -51.09 -0.46 -21.69 16 27 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 28 H 0.06 0.57 7.66 -2.38 -0.02 0.55 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.16 2.07 6.29 -2.91 -0.02 2.05 16 31 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.42 9.65 7.82 -92.71 -0.72 8.92 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.09 3.07 8.03 -2.39 -0.02 3.05 16 36 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.37 20.40 7.32 -74.05 -0.54 19.86 16 38 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 39 H 0.04 2.41 7.47 -2.38 -0.02 2.39 16 40 H 0.04 2.20 8.03 -2.39 -0.02 2.18 16 41 H 0.11 4.41 6.42 -2.91 -0.02 4.39 16 42 H 0.41 8.37 8.19 -92.71 -0.76 7.61 16 43 H 0.40 9.44 8.84 -92.71 -0.82 8.62 16 Total: -1.00 -70.92 354.40 -1.63 -72.54 By element: Atomic # 1 Polarization: 56.09 SS G_CDS: -1.75 Total: 54.34 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 5.71 Total: 22.84 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -4.68 Total: -122.32 kcal Atomic # 8 Polarization: -68.33 SS G_CDS: -2.94 Total: -71.27 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -70.92 -1.63 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579229337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.100 kcal (2) G-P(sol) polarization free energy of solvation -70.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds