Wall clock time and date at job start Tue Mar 31 2020 13:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00386 * 2 1 4 4 C 1.39958 * 111.00096 * 123.96148 * 2 1 3 5 5 C 1.38257 * 120.02154 * 300.01544 * 4 2 1 6 6 C 1.39799 * 119.83874 * 179.97438 * 5 4 2 7 7 C 1.47449 * 120.05592 * 179.97438 * 6 5 4 8 8 O 1.21507 * 120.00266 * 0.02562 * 7 6 5 9 9 O 1.34759 * 120.00242 * 180.02562 * 7 6 5 10 10 C 1.39781 * 119.88630 * 0.02562 * 6 5 4 11 11 C 1.37754 * 120.05150 * 359.71973 * 10 6 5 12 12 C 1.38940 * 120.15935 * 0.55482 * 11 10 6 13 13 N 1.39639 * 119.94391 * 179.71564 * 12 11 10 14 14 C 1.34777 * 120.00143 * 335.14124 * 13 12 11 15 15 O 1.21583 * 119.99818 * 354.33750 * 14 13 12 16 16 N 1.34776 * 119.99876 * 174.05396 * 14 13 12 17 17 C 1.46503 * 119.99873 * 0.28279 * 16 14 13 18 18 C 1.46495 * 119.99929 * 180.27488 * 16 14 13 19 19 C 1.50698 * 109.46940 * 90.00148 * 18 16 14 20 20 H 1.07991 * 120.00415 * 0.02562 * 19 18 16 21 21 C 1.37882 * 119.99646 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00020 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99643 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47349 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46620 * 120.00404 * 23 21 19 26 26 H 1.48494 * 109.47104 * 239.99905 * 23 21 19 27 27 H 1.09001 * 109.46648 * 299.99609 * 1 2 3 28 28 H 1.08999 * 109.47476 * 59.99311 * 1 2 3 29 29 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47763 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47450 * 300.00810 * 3 2 1 32 32 H 1.09002 * 109.47051 * 60.00419 * 3 2 1 33 33 H 1.07996 * 120.08072 * 359.95833 * 5 4 2 34 34 H 0.96699 * 116.99736 * 180.02562 * 9 7 6 35 35 H 1.08007 * 119.97160 * 179.97438 * 10 6 5 36 36 H 1.08000 * 119.92380 * 180.27252 * 11 10 6 37 37 H 0.97000 * 119.99808 * 155.13562 * 13 12 11 38 38 H 1.08991 * 109.47428 * 89.99758 * 17 16 14 39 39 H 1.09000 * 109.46613 * 209.99853 * 17 16 14 40 40 H 1.08999 * 109.46881 * 329.98758 * 17 16 14 41 41 H 1.09000 * 109.47435 * 210.00425 * 18 16 14 42 42 H 1.09005 * 109.46875 * 330.00198 * 18 16 14 43 43 H 0.96999 * 119.99445 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9706 -0.7299 1.0837 5 6 1.6595 -0.3508 2.3764 6 6 2.1621 -1.0830 3.4560 7 6 1.8338 -0.6827 4.8366 8 8 1.1254 0.2841 5.0367 9 8 2.3193 -1.3889 5.8766 10 6 2.9774 -2.1946 3.2245 11 6 3.2802 -2.5713 1.9346 12 6 2.7864 -1.8418 0.8602 13 7 3.1010 -2.2242 -0.4455 14 6 4.2226 -2.9307 -0.6890 15 8 5.0122 -3.1467 0.2100 16 7 4.4661 -3.4026 -1.9277 17 6 3.5146 -3.1423 -3.0109 18 6 5.6823 -4.1757 -2.1911 19 6 5.4068 -5.6393 -1.9609 20 1 4.4240 -5.9615 -1.6500 21 6 6.4092 -6.5673 -2.1483 22 7 7.6059 -6.1750 -2.5274 23 14 6.0679 -8.3815 -1.8623 24 1 4.6543 -8.5593 -1.4437 25 1 6.3101 -9.1347 -3.1190 26 1 6.9680 -8.8926 -0.7976 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.0851 1.3423 -0.0005 31 1 1.6460 1.8948 -0.8899 32 1 1.6461 1.8947 0.8900 33 1 1.0299 0.5089 2.5517 34 1 2.0764 -1.0883 6.7630 35 1 3.3668 -2.7610 4.0576 36 1 3.9066 -3.4332 1.7580 37 1 2.5123 -1.9814 -1.1771 38 1 3.7795 -2.2110 -3.5113 39 1 3.5476 -3.9623 -3.7282 40 1 2.5088 -3.0603 -2.5990 41 1 5.9935 -4.0227 -3.2244 42 1 6.4752 -3.8453 -1.5201 43 1 8.3112 -6.8278 -2.6588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598468002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:41 Heat of formation + Delta-G solvation = -64.962357 kcal Electronic energy + Delta-G solvation = -27212.374922 eV Core-core repulsion = 23258.641827 eV Total energy + Delta-G solvation = -3953.733094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90993 -40.05538 -38.97047 -36.57962 -36.19108 -35.09477 -34.46784 -32.60234 -30.24795 -29.85455 -27.79613 -27.75921 -25.98858 -25.01547 -24.32162 -22.79129 -21.80008 -20.89362 -19.45906 -18.28432 -17.97130 -17.34884 -16.91945 -16.58318 -15.74610 -15.58093 -15.52777 -15.21929 -14.98119 -14.83256 -14.23783 -13.94397 -13.69512 -13.68350 -13.21662 -12.98442 -12.71540 -12.62169 -12.36215 -12.26389 -12.20845 -11.92410 -11.90786 -11.69565 -11.38622 -11.24435 -10.92864 -10.77603 -10.63062 -10.35639 -10.17113 -9.68332 -9.34608 -8.90964 -8.79151 -8.47086 -8.06581 -7.65648 -6.07787 -4.12726 0.67143 1.24865 2.44743 2.92222 3.07283 3.28087 3.36045 3.40093 3.53338 3.63967 3.94341 4.34782 4.47554 4.79691 4.90555 4.97698 5.08710 5.11352 5.20358 5.26540 5.29087 5.34285 5.45759 5.51260 5.64306 5.70392 5.82203 5.86956 6.05616 6.09202 6.15270 6.26932 6.34909 6.57735 6.61349 6.70729 6.87408 7.23254 7.30233 7.42670 7.60260 7.78313 7.89496 8.18189 8.46618 8.87526 9.10796 9.52746 11.00147 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.003407 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.830349 B = 8215.377383 C = 9573.884462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.504 5.504 3 C 0.028 3.972 4 C 0.018 3.982 5 C -0.055 4.055 6 C -0.166 4.166 7 C 0.534 3.466 8 O -0.528 6.528 9 O -0.512 6.512 10 C -0.033 4.033 11 C -0.149 4.149 12 C 0.256 3.744 13 N -0.676 5.676 14 C 0.694 3.306 15 O -0.564 6.564 16 N -0.607 5.607 17 C 0.082 3.918 18 C 0.258 3.742 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.282 1.282 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.133 0.867 34 H 0.411 0.589 35 H 0.140 0.860 36 H 0.167 0.833 37 H 0.413 0.587 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 12.826 6.688 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.224 5.224 3 C -0.119 4.119 4 C -0.080 4.080 5 C -0.075 4.075 6 C -0.169 4.169 7 C 0.380 3.620 8 O -0.419 6.419 9 O -0.323 6.323 10 C -0.052 4.052 11 C -0.170 4.170 12 C 0.154 3.846 13 N -0.321 5.321 14 C 0.396 3.604 15 O -0.441 6.441 16 N -0.342 5.342 17 C -0.063 4.063 18 C 0.139 3.861 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.208 1.208 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.151 0.849 34 H 0.269 0.731 35 H 0.158 0.842 36 H 0.184 0.816 37 H 0.251 0.749 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.428 12.417 6.309 19.347 hybrid contribution -0.907 -0.236 0.987 1.361 sum -14.335 12.181 7.296 20.177 Atomic orbital electron populations 1.22515 0.85972 1.02662 1.01143 1.59525 1.08402 1.14438 1.40083 1.22465 1.01201 0.87211 1.00980 1.18192 1.04561 0.96189 0.89014 1.21328 0.97045 0.98186 0.90979 1.18728 1.07588 1.01634 0.88947 1.20877 0.75839 0.79392 0.85934 1.90860 1.36840 1.27811 1.86412 1.84602 1.71241 1.57792 1.18652 1.21382 0.92750 0.93629 0.97427 1.21640 1.02735 1.02317 0.90328 1.17749 0.91969 0.90013 0.84834 1.42971 1.25269 1.56299 1.07604 1.15979 0.81009 0.78987 0.84387 1.90860 1.47275 1.62701 1.43227 1.47538 1.25563 1.54785 1.06303 1.21632 0.91648 1.01516 0.91476 1.19296 0.80102 0.89532 0.97137 1.21473 0.97446 0.91414 1.46322 0.92348 1.24930 0.94843 0.99248 0.95032 1.69940 1.02113 1.34407 1.46822 0.86437 0.78398 0.84733 0.77807 1.19817 1.20986 1.20838 0.94902 0.90749 0.91060 0.90971 0.90793 0.94948 0.84900 0.73084 0.84187 0.81608 0.74897 0.93433 0.90137 0.92941 0.94662 0.93555 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.28 60.07 0.56 0.76 16 2 N -0.50 -5.36 4.30 -186.72 -0.80 -6.16 16 3 C 0.03 0.26 9.33 60.06 0.56 0.82 16 4 C 0.02 0.22 4.73 -83.59 -0.40 -0.17 16 5 C -0.05 -0.68 8.19 -38.99 -0.32 -1.00 16 6 C -0.17 -2.15 5.87 -104.99 -0.62 -2.77 16 7 C 0.53 6.62 8.26 34.48 0.28 6.91 16 8 O -0.53 -7.67 17.12 -19.27 -0.33 -8.00 16 9 O -0.51 -4.84 12.67 -40.65 -0.51 -5.35 16 10 C -0.03 -0.44 9.60 -39.18 -0.38 -0.82 16 11 C -0.15 -2.36 8.69 -39.50 -0.34 -2.70 16 12 C 0.26 3.89 6.45 -83.50 -0.54 3.35 16 13 N -0.68 -10.67 5.08 -14.08 -0.07 -10.74 16 14 C 0.69 14.10 8.08 -86.92 -0.70 13.40 16 15 O -0.56 -13.51 13.07 5.29 0.07 -13.44 16 16 N -0.61 -12.39 2.86 -188.75 -0.54 -12.93 16 17 C 0.08 1.22 10.16 59.85 0.61 1.83 16 18 C 0.26 6.53 5.16 -5.20 -0.03 6.50 16 19 C -0.53 -14.50 9.39 -34.44 -0.32 -14.83 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.03 0.27 7.26 -51.93 -0.38 -0.11 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.29 7.47 -51.93 -0.39 -0.10 16 33 H 0.13 1.57 6.65 -52.49 -0.35 1.22 16 34 H 0.41 1.92 9.11 45.56 0.42 2.33 16 35 H 0.14 1.66 7.60 -52.48 -0.40 1.26 16 36 H 0.17 3.08 5.77 -52.49 -0.30 2.78 16 37 H 0.41 5.51 6.06 -40.82 -0.25 5.26 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 40 H 0.05 0.64 6.45 -51.93 -0.33 0.31 16 41 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 42 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -33.90 364.62 -7.57 -41.47 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.86 Total: 5.61 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -1.73 Total: 12.90 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.68 Total: -55.07 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.78 Total: -26.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.90 -7.57 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.491 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds