Wall clock time and date at job start Tue Mar 31 2020 13:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35397 * 117.00533 * 2 1 4 4 N 1.32198 * 119.82332 * 359.97438 * 3 2 1 5 5 C 1.32562 * 121.56882 * 179.97438 * 4 3 2 6 6 N 1.38403 * 119.48154 * 180.02562 * 5 4 3 7 7 C 1.46957 * 111.00009 * 123.80449 * 6 5 4 8 8 C 1.53044 * 109.36379 * 176.81174 * 7 6 5 9 9 N 1.46955 * 109.36776 * 58.39730 * 8 7 6 10 10 C 1.46896 * 111.00498 * 176.81015 * 9 8 7 11 11 C 1.50700 * 109.47037 * 58.97808 * 10 9 8 12 12 H 1.08000 * 119.99999 * 5.01116 * 11 10 9 13 13 C 1.37872 * 120.00408 * 185.01414 * 11 10 9 14 14 N 1.31523 * 119.99629 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00370 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47229 * 89.99771 * 15 13 11 17 17 H 1.48507 * 109.47041 * 209.99937 * 15 13 11 18 18 H 1.48500 * 109.46873 * 329.99577 * 15 13 11 19 19 C 1.46957 * 110.88226 * 300.68189 * 9 8 7 20 20 C 1.46952 * 110.99882 * 0.02562 * 6 5 4 21 21 C 1.39441 * 121.03747 * 0.02810 * 5 4 3 22 22 C 1.36817 * 119.54245 * 359.71489 * 21 5 4 23 23 C 1.40386 * 118.54200 * 0.52312 * 22 21 5 24 24 C 1.47054 * 120.51503 * 179.75211 * 23 22 21 25 25 O 1.21562 * 119.99832 * 179.72408 * 24 23 22 26 26 O 1.34795 * 120.00402 * 359.72446 * 24 23 22 27 27 H 1.09002 * 109.47537 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46828 * 300.00384 * 1 2 3 29 29 H 1.09009 * 109.47018 * 59.99750 * 1 2 3 30 30 H 1.09009 * 109.48405 * 296.77753 * 7 6 5 31 31 H 1.09003 * 109.49109 * 56.83786 * 7 6 5 32 32 H 1.08998 * 109.48980 * 298.42996 * 8 7 6 33 33 H 1.09002 * 109.48814 * 178.36369 * 8 7 6 34 34 H 1.08992 * 109.47447 * 178.97878 * 10 9 8 35 35 H 1.09008 * 109.46986 * 298.97998 * 10 9 8 36 36 H 0.97006 * 119.99753 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.48350 * 299.35500 * 19 9 8 38 38 H 1.08999 * 109.48931 * 179.28236 * 19 9 8 39 39 H 1.09002 * 109.48904 * 303.15516 * 20 6 5 40 40 H 1.08998 * 109.49081 * 63.20055 * 20 6 5 41 41 H 1.08001 * 120.23391 * 179.97438 * 21 5 4 42 42 H 1.07996 * 120.72933 * 180.25888 * 22 21 5 43 43 H 0.96702 * 116.99696 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2063 0.0000 4 7 1.3205 2.3129 -0.0005 5 6 1.8862 3.5117 0.0000 6 7 1.0872 4.6419 -0.0001 7 6 1.4060 5.5123 1.1403 8 6 0.5592 6.7845 1.0599 9 7 -0.8651 6.4226 1.0593 10 6 -1.7132 7.6221 1.0593 11 6 -1.4048 8.4552 -0.1580 12 1 -0.7136 8.0886 -0.9024 13 6 -2.0051 9.6856 -0.3214 14 7 -2.8472 10.1320 0.5849 15 14 -1.6234 10.7180 -1.8307 16 1 -2.5820 10.3838 -2.9144 17 1 -1.7450 12.1581 -1.4890 18 1 -0.2397 10.4331 -2.2883 19 6 -1.1840 5.5522 -0.0810 20 6 -0.3370 4.2799 -0.0001 21 6 3.2735 3.6521 0.0005 22 6 4.0645 2.5358 0.0064 23 6 3.4461 1.2755 0.0005 24 6 4.2545 0.0471 0.0010 25 8 3.7092 -1.0394 0.0010 26 8 5.6001 0.1257 0.0015 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.1871 4.9877 2.0704 31 1 2.4632 5.7766 1.1117 32 1 0.7979 7.3230 0.1428 33 1 0.7729 7.4186 1.9204 34 1 -2.7618 7.3257 1.0406 35 1 -1.5167 8.2060 1.9586 36 1 -3.2693 10.9978 0.4701 37 1 -0.9650 6.0767 -1.0111 38 1 -2.2410 5.2878 -0.0523 39 1 -0.5511 3.6456 -0.8603 40 1 -0.5754 3.7413 0.9171 41 1 3.7206 4.6352 0.0004 42 1 5.1410 2.6222 0.0111 43 1 6.0886 -0.7088 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599730348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:15 Heat of formation + Delta-G solvation = -62.469586 kcal Electronic energy + Delta-G solvation = -27247.591925 eV Core-core repulsion = 23293.966925 eV Total energy + Delta-G solvation = -3953.625000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35192 -39.94193 -39.13978 -37.72800 -36.09402 -35.25567 -32.90235 -32.41992 -30.78395 -30.38431 -28.08329 -27.31045 -25.49409 -24.07376 -23.71015 -22.56516 -21.83470 -21.49396 -19.42707 -18.55686 -18.19762 -17.43923 -17.11501 -16.47253 -16.32443 -15.99338 -15.46535 -14.94497 -14.86747 -14.63575 -14.41466 -14.21014 -14.02226 -13.76135 -13.53812 -13.18704 -12.96747 -12.76625 -12.13365 -12.04144 -11.92061 -11.68818 -11.42943 -11.17103 -10.96207 -10.92288 -10.76083 -10.69756 -10.57184 -10.30625 -10.27366 -9.94234 -9.89199 -9.66494 -9.38612 -8.49536 -8.14282 -7.31724 -6.09375 -4.18766 0.41543 1.13830 2.40961 2.74963 2.92191 3.23618 3.30999 3.33617 3.34959 3.63997 4.19316 4.35582 4.63342 4.76631 4.85675 4.92016 5.12076 5.15395 5.19460 5.21086 5.27241 5.35841 5.48811 5.53801 5.62988 5.66695 5.80899 5.84236 5.92414 6.05255 6.10083 6.32812 6.43952 6.57336 6.64579 6.70252 6.86934 7.13703 7.17276 7.44525 7.63573 7.80902 7.82067 7.91470 8.13568 8.20435 8.91143 9.48730 10.95933 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025073 B = 0.002758 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.454790 B =10149.477098 C =10671.165709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.276 6.276 3 C 0.412 3.588 4 N -0.582 5.582 5 C 0.403 3.597 6 N -0.471 5.471 7 C 0.064 3.936 8 C 0.062 3.938 9 N -0.544 5.544 10 C 0.188 3.812 11 C -0.552 4.552 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.058 3.942 20 C 0.069 3.931 21 C -0.241 4.241 22 C 0.035 3.965 23 C -0.253 4.253 24 C 0.535 3.465 25 O -0.505 6.505 26 O -0.519 6.519 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.463 -17.097 0.119 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.180 6.180 3 C 0.230 3.770 4 N -0.313 5.313 5 C 0.168 3.832 6 N -0.185 5.185 7 C -0.061 4.061 8 C -0.067 4.067 9 N -0.268 5.268 10 C 0.062 3.938 11 C -0.591 4.591 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.071 4.071 20 C -0.057 4.057 21 C -0.264 4.264 22 C 0.010 3.990 23 C -0.258 4.258 24 C 0.380 3.620 25 O -0.394 6.394 26 O -0.331 6.331 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.166 0.834 42 H 0.172 0.828 43 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 12.083 -17.128 0.200 20.962 hybrid contribution 1.001 0.479 -1.172 1.614 sum 13.084 -16.649 -0.972 21.197 Atomic orbital electron populations 1.22991 0.77002 1.03273 1.02835 1.86469 1.22875 1.23217 1.85455 1.19547 0.87482 0.84712 0.85271 1.67512 1.39583 0.97836 1.26361 1.19914 0.90738 0.87184 0.85327 1.58929 1.07125 1.12014 1.40458 1.22540 1.00625 0.94036 0.88873 1.21984 0.89003 0.93308 1.02392 1.62739 1.03703 1.20165 1.40241 1.19741 0.92153 0.85116 0.96756 1.21736 1.26862 1.03094 1.07378 0.92324 1.24961 0.94844 0.97639 0.96280 1.69946 1.28819 1.19827 1.34276 0.86637 0.78798 0.79588 0.83261 1.20632 1.21139 1.19894 1.22058 0.98333 0.92058 0.94659 1.22236 0.83406 0.97859 1.02205 1.21197 0.92161 1.00721 1.12307 1.21254 1.00910 0.89500 0.87313 1.18708 0.89884 0.92760 1.24488 1.20239 0.80296 0.88803 0.72690 1.90941 1.72689 1.29625 1.46141 1.84550 1.20140 1.41862 1.86552 0.88369 0.91918 0.91933 0.92750 0.89757 0.92682 0.90254 0.95316 0.94582 0.92749 0.93275 0.90605 0.90055 0.92486 0.83435 0.82838 0.73033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.38 101.05 1.05 1.40 16 2 O -0.28 -3.79 8.56 -39.73 -0.34 -4.13 16 3 C 0.41 5.67 7.51 -16.58 -0.12 5.54 16 4 N -0.58 -8.10 7.51 -12.21 -0.09 -8.19 16 5 C 0.40 5.44 6.39 -155.35 -0.99 4.45 16 6 N -0.47 -6.91 4.72 -173.09 -0.82 -7.72 16 7 C 0.06 0.90 5.36 -3.77 -0.02 0.88 16 8 C 0.06 1.10 5.24 -3.77 -0.02 1.08 16 9 N -0.54 -10.89 4.92 -235.91 -1.16 -12.05 16 10 C 0.19 4.59 5.14 -4.98 -0.03 4.56 16 11 C -0.55 -14.49 7.66 -34.44 -0.26 -14.75 16 12 H 0.06 1.54 5.82 -52.49 -0.31 1.23 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 15 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.06 1.06 5.32 -3.76 -0.02 1.04 16 20 C 0.07 1.07 4.77 -3.77 -0.02 1.05 16 21 C -0.24 -2.65 9.12 -39.65 -0.36 -3.01 16 22 C 0.04 0.35 9.67 -39.29 -0.38 -0.03 16 23 C -0.25 -3.11 5.90 -104.70 -0.62 -3.73 16 24 C 0.54 6.39 8.26 34.31 0.28 6.68 16 25 O -0.51 -7.50 15.97 -26.63 -0.43 -7.93 16 26 O -0.52 -4.19 12.74 -40.75 -0.52 -4.71 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.06 0.64 8.11 -51.92 -0.42 0.22 16 30 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 31 H 0.08 0.96 6.75 -51.93 -0.35 0.61 16 32 H 0.05 1.09 6.62 -51.93 -0.34 0.74 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.03 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 37 H 0.05 1.00 6.78 -51.93 -0.35 0.65 16 38 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 39 H 0.08 1.20 7.81 -51.93 -0.41 0.80 16 40 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 41 H 0.15 1.35 7.14 -52.49 -0.37 0.97 16 42 H 0.15 1.11 7.69 -52.49 -0.40 0.71 16 43 H 0.41 1.49 9.11 45.56 0.42 1.91 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -32.03 353.81 -8.96 -40.99 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.05 Total: 0.44 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.61 Total: 6.84 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -1.33 Total: -52.68 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.28 Total: -16.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.03 -8.96 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599730348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.476 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds