Wall clock time and date at job start Tue Mar 31 2020 13:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35397 * 117.00533 * 2 1 4 4 N 1.32198 * 119.82332 * 359.97438 * 3 2 1 5 5 C 1.32562 * 121.56882 * 179.97438 * 4 3 2 6 6 N 1.38403 * 119.48154 * 180.02562 * 5 4 3 7 7 C 1.46957 * 111.00009 * 123.80449 * 6 5 4 8 8 C 1.53044 * 109.36379 * 176.81174 * 7 6 5 9 9 N 1.46955 * 109.36776 * 58.39730 * 8 7 6 10 10 C 1.46896 * 111.00498 * 176.81015 * 9 8 7 11 11 C 1.50700 * 109.47037 * 58.97808 * 10 9 8 12 12 H 1.08000 * 119.99999 * 5.01116 * 11 10 9 13 13 C 1.37872 * 120.00408 * 185.01414 * 11 10 9 14 14 N 1.31523 * 119.99629 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00370 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47229 * 89.99771 * 15 13 11 17 17 H 1.48507 * 109.47041 * 209.99937 * 15 13 11 18 18 H 1.48500 * 109.46873 * 329.99577 * 15 13 11 19 19 C 1.46957 * 110.88226 * 300.68189 * 9 8 7 20 20 C 1.46952 * 110.99882 * 0.02562 * 6 5 4 21 21 C 1.39441 * 121.03747 * 0.02810 * 5 4 3 22 22 C 1.36817 * 119.54245 * 359.71489 * 21 5 4 23 23 C 1.40386 * 118.54200 * 0.52312 * 22 21 5 24 24 C 1.47054 * 120.51503 * 179.75211 * 23 22 21 25 25 O 1.21562 * 119.99832 * 179.72408 * 24 23 22 26 26 O 1.34795 * 120.00402 * 359.72446 * 24 23 22 27 27 H 1.09002 * 109.47537 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46828 * 300.00384 * 1 2 3 29 29 H 1.09009 * 109.47018 * 59.99750 * 1 2 3 30 30 H 1.09009 * 109.48405 * 296.77753 * 7 6 5 31 31 H 1.09003 * 109.49109 * 56.83786 * 7 6 5 32 32 H 1.08998 * 109.48980 * 298.42996 * 8 7 6 33 33 H 1.09002 * 109.48814 * 178.36369 * 8 7 6 34 34 H 1.08992 * 109.47447 * 178.97878 * 10 9 8 35 35 H 1.09008 * 109.46986 * 298.97998 * 10 9 8 36 36 H 0.97006 * 119.99753 * 179.97438 * 14 13 11 37 37 H 1.08998 * 109.48350 * 299.35500 * 19 9 8 38 38 H 1.08999 * 109.48931 * 179.28236 * 19 9 8 39 39 H 1.09002 * 109.48904 * 303.15516 * 20 6 5 40 40 H 1.08998 * 109.49081 * 63.20055 * 20 6 5 41 41 H 1.08001 * 120.23391 * 179.97438 * 21 5 4 42 42 H 1.07996 * 120.72933 * 180.25888 * 22 21 5 43 43 H 0.96702 * 116.99696 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2063 0.0000 4 7 1.3205 2.3129 -0.0005 5 6 1.8862 3.5117 0.0000 6 7 1.0872 4.6419 -0.0001 7 6 1.4060 5.5123 1.1403 8 6 0.5592 6.7845 1.0599 9 7 -0.8651 6.4226 1.0593 10 6 -1.7132 7.6221 1.0593 11 6 -1.4048 8.4552 -0.1580 12 1 -0.7136 8.0886 -0.9024 13 6 -2.0051 9.6856 -0.3214 14 7 -2.8472 10.1320 0.5849 15 14 -1.6234 10.7180 -1.8307 16 1 -2.5820 10.3838 -2.9144 17 1 -1.7450 12.1581 -1.4890 18 1 -0.2397 10.4331 -2.2883 19 6 -1.1840 5.5522 -0.0810 20 6 -0.3370 4.2799 -0.0001 21 6 3.2735 3.6521 0.0005 22 6 4.0645 2.5358 0.0064 23 6 3.4461 1.2755 0.0005 24 6 4.2545 0.0471 0.0010 25 8 3.7092 -1.0394 0.0010 26 8 5.6001 0.1257 0.0015 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.1871 4.9877 2.0704 31 1 2.4632 5.7766 1.1117 32 1 0.7979 7.3230 0.1428 33 1 0.7729 7.4186 1.9204 34 1 -2.7618 7.3257 1.0406 35 1 -1.5167 8.2060 1.9586 36 1 -3.2693 10.9978 0.4701 37 1 -0.9650 6.0767 -1.0111 38 1 -2.2410 5.2878 -0.0523 39 1 -0.5511 3.6456 -0.8603 40 1 -0.5754 3.7413 0.9171 41 1 3.7206 4.6352 0.0004 42 1 5.1410 2.6222 0.0111 43 1 6.0886 -0.7088 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599730348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:14 Heat of formation + Delta-G solvation = -86.689045 kcal Electronic energy + Delta-G solvation = -27248.642159 eV Core-core repulsion = 23293.966925 eV Total energy + Delta-G solvation = -3954.675234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31142 -40.92126 -40.18350 -38.89005 -36.90704 -36.65648 -34.53176 -33.70447 -32.03956 -31.53068 -29.58841 -28.26036 -27.12007 -25.22918 -24.92943 -23.79612 -23.23874 -22.50411 -20.89323 -19.50927 -19.10288 -18.55591 -18.29157 -17.95501 -17.34371 -17.09528 -16.63256 -16.33642 -16.02072 -15.89315 -15.81604 -15.41123 -15.17736 -14.92444 -14.80052 -14.39487 -14.11205 -13.81679 -13.67288 -13.49175 -12.96085 -12.86094 -12.78877 -12.53288 -12.47186 -12.35512 -12.21346 -12.16859 -11.92054 -11.80252 -11.62531 -11.49848 -11.21275 -10.88830 -10.60219 -10.43559 -9.16495 -9.05138 -8.15460 -6.34419 -0.51830 0.26615 1.38013 1.39246 1.49232 1.49838 1.89467 2.12212 2.34969 2.38149 2.69036 3.10246 3.22171 3.31817 3.76853 3.80682 3.97467 4.11448 4.12744 4.25950 4.37235 4.38213 4.40195 4.43919 4.46781 4.62601 4.71575 4.78216 4.87840 4.93530 5.03284 5.05808 5.14784 5.22152 5.26319 5.34052 5.51864 5.65112 5.73643 5.83926 6.01981 6.15362 6.23831 6.46402 6.66416 6.85779 7.07330 7.37305 8.87316 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025073 B = 0.002758 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.454790 B =10149.477098 C =10671.165709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.294 6.294 3 C 0.392 3.608 4 N -0.594 5.594 5 C 0.384 3.616 6 N -0.480 5.480 7 C 0.075 3.925 8 C 0.063 3.937 9 N -0.544 5.544 10 C 0.201 3.799 11 C -0.554 4.554 12 H 0.058 0.942 13 C 0.013 3.987 14 N -0.926 5.926 15 Si 0.955 3.045 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.063 3.937 20 C 0.087 3.913 21 C -0.232 4.232 22 C 0.051 3.949 23 C -0.261 4.261 24 C 0.541 3.459 25 O -0.541 6.541 26 O -0.503 6.503 27 H 0.120 0.880 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.034 0.966 33 H 0.079 0.921 34 H 0.003 0.997 35 H 0.012 0.988 36 H 0.265 0.735 37 H 0.027 0.973 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.172 0.828 42 H 0.189 0.811 43 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.277 -17.642 -0.604 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.199 6.199 3 C 0.210 3.790 4 N -0.325 5.325 5 C 0.150 3.850 6 N -0.195 5.195 7 C -0.050 4.050 8 C -0.066 4.066 9 N -0.268 5.268 10 C 0.075 3.925 11 C -0.593 4.593 12 H 0.076 0.924 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.781 3.219 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.066 4.066 20 C -0.040 4.040 21 C -0.255 4.255 22 C 0.027 3.973 23 C -0.266 4.266 24 C 0.387 3.613 25 O -0.433 6.433 26 O -0.317 6.317 27 H 0.138 0.862 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.021 0.979 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.190 0.810 42 H 0.206 0.794 43 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 14.945 -17.701 -0.526 23.172 hybrid contribution 0.203 0.554 -0.917 1.090 sum 15.148 -17.147 -1.443 22.925 Atomic orbital electron populations 1.23126 0.75843 1.04679 1.02509 1.86454 1.24183 1.23591 1.85660 1.19800 0.88305 0.84587 0.86277 1.67389 1.40363 0.98193 1.26598 1.20041 0.91643 0.86530 0.86744 1.58969 1.06460 1.12978 1.41098 1.22458 1.01597 0.91980 0.88932 1.22002 0.87815 0.95453 1.01289 1.62654 1.04766 1.18312 1.41117 1.19386 0.91605 0.86353 0.95182 1.21961 1.26372 1.03317 1.07665 0.92388 1.25785 0.94727 0.99002 0.99138 1.70065 1.29975 1.20369 1.36191 0.85592 0.78847 0.77875 0.79604 1.20270 1.20734 1.19042 1.22014 0.98927 0.92839 0.92817 1.21950 0.84014 0.95754 1.02309 1.21455 0.90895 1.02195 1.10920 1.21608 1.02411 0.88005 0.85307 1.19013 0.89607 0.94047 1.23961 1.20189 0.81268 0.88058 0.71820 1.90932 1.73653 1.30819 1.47891 1.84489 1.18213 1.43426 1.85606 0.86171 0.92247 0.92175 0.92586 0.86216 0.94737 0.90303 0.97920 0.97022 0.92629 0.95447 0.91130 0.89506 0.92715 0.81010 0.79365 0.70566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.38 113.37 1.18 1.85 16 2 O -0.29 -7.97 8.56 -66.01 -0.57 -8.54 16 3 C 0.39 10.35 7.51 85.16 0.64 10.99 16 4 N -0.59 -15.87 7.51 -305.58 -2.30 -18.17 16 5 C 0.38 9.54 6.39 133.29 0.85 10.39 16 6 N -0.48 -13.32 4.72 -701.52 -3.31 -16.63 16 7 C 0.07 1.95 5.36 86.31 0.46 2.41 16 8 C 0.06 2.21 5.24 86.31 0.45 2.66 16 9 N -0.54 -22.26 4.92 -900.30 -4.43 -26.68 16 10 C 0.20 10.23 5.14 85.56 0.44 10.67 16 11 C -0.55 -29.70 7.66 25.60 0.20 -29.50 16 12 H 0.06 3.07 5.82 -2.91 -0.02 3.06 16 13 C 0.01 0.71 5.46 84.65 0.46 1.17 16 14 N -0.93 -54.05 13.29 21.45 0.28 -53.77 16 15 Si 0.96 42.98 29.54 68.60 2.03 45.00 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 C 0.06 2.35 5.32 86.31 0.46 2.81 16 20 C 0.09 2.64 4.77 86.31 0.41 3.05 16 21 C -0.23 -4.24 9.12 22.23 0.20 -4.04 16 22 C 0.05 0.83 9.67 22.46 0.22 1.05 16 23 C -0.26 -5.82 5.90 -19.92 -0.12 -5.93 16 24 C 0.54 11.73 8.26 70.13 0.58 12.31 16 25 O -0.54 -15.50 15.97 26.63 0.43 -15.07 16 26 O -0.50 -6.39 12.74 -57.07 -0.73 -7.11 16 27 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 29 H 0.06 1.23 8.11 -2.38 -0.02 1.21 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 31 H 0.12 2.28 6.75 -2.39 -0.02 2.27 16 32 H 0.03 1.35 6.62 -2.39 -0.02 1.34 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.00 0.15 8.12 -2.39 -0.02 0.13 16 35 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 37 H 0.03 1.14 6.78 -2.39 -0.02 1.12 16 38 H 0.07 2.65 8.12 -2.39 -0.02 2.63 16 39 H 0.09 2.55 7.81 -2.39 -0.02 2.53 16 40 H 0.05 1.69 8.04 -2.39 -0.02 1.67 16 41 H 0.17 2.29 7.14 -2.91 -0.02 2.27 16 42 H 0.19 1.71 7.69 -2.91 -0.02 1.68 16 43 H 0.43 1.69 9.11 -74.06 -0.67 1.01 16 Total: -1.00 -70.85 353.81 -1.78 -72.63 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.37 Total: 8.45 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 6.43 Total: 19.90 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -9.75 Total: -115.26 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.87 Total: -30.72 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.85 -1.78 -72.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599730348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.064 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds