Wall clock time and date at job start Tue Mar 31 2020 13:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35836 * 125.64863 * 2 1 4 4 C 1.35920 * 108.79430 * 179.97438 * 3 2 1 5 5 N 1.40788 * 126.11596 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99812 * 180.02562 * 5 4 3 7 7 O 1.21595 * 120.00623 * 5.10601 * 6 5 4 8 8 N 1.34782 * 119.99378 * 185.10663 * 6 5 4 9 9 C 1.46924 * 120.63318 * 354.48694 * 8 6 5 10 10 C 1.53186 * 108.77376 * 233.87972 * 9 8 6 11 11 C 1.53038 * 109.31520 * 305.36388 * 10 9 8 12 12 C 1.50704 * 109.44928 * 181.37984 * 11 10 9 13 13 H 1.08005 * 120.00035 * 239.94101 * 12 11 10 14 14 C 1.37875 * 119.99968 * 59.93971 * 12 11 10 15 15 N 1.31503 * 120.00119 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99671 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47392 * 60.00318 * 16 14 12 18 18 H 1.48505 * 109.47049 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47468 * 299.99988 * 16 14 12 20 20 C 1.53049 * 109.53821 * 61.36681 * 11 10 9 21 21 C 1.46934 * 120.62609 * 174.76452 * 8 6 5 22 22 C 1.40143 * 107.76925 * 0.26162 * 4 3 2 23 23 C 1.37657 * 125.65733 * 179.97438 * 2 1 3 24 24 C 1.46465 * 126.17858 * 0.02562 * 23 2 1 25 25 O 1.21630 * 119.99821 * 180.02562 * 24 23 2 26 26 O 1.34900 * 120.00381 * 359.97438 * 24 23 2 27 27 H 1.08998 * 109.46806 * 89.98156 * 1 2 3 28 28 H 1.09004 * 109.46576 * 209.97455 * 1 2 3 29 29 H 1.08995 * 109.47562 * 329.97469 * 1 2 3 30 30 H 1.07999 * 125.59954 * 0.02562 * 3 2 1 31 31 H 0.97000 * 120.00041 * 359.97438 * 5 4 3 32 32 H 1.08992 * 109.58521 * 353.67072 * 9 8 6 33 33 H 1.09006 * 109.58115 * 114.09548 * 9 8 6 34 34 H 1.09008 * 109.49547 * 185.41396 * 10 9 8 35 35 H 1.09002 * 109.49643 * 65.31714 * 10 9 8 36 36 H 1.08996 * 109.46185 * 301.34598 * 11 10 9 37 37 H 0.97005 * 120.00503 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.49725 * 178.68397 * 20 11 10 39 39 H 1.09003 * 109.51897 * 58.59933 * 20 11 10 40 40 H 1.09001 * 109.58454 * 245.90487 * 21 8 6 41 41 H 1.08999 * 109.58365 * 6.18545 * 21 8 6 42 42 H 1.08005 * 126.44407 * 179.73191 * 22 4 3 43 43 H 0.96700 * 117.00498 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2567 1.1038 0.0000 4 6 3.5575 0.7097 0.0006 5 7 4.6814 1.5576 0.0013 6 6 5.9223 1.0316 0.0013 7 8 6.0729 -0.1713 -0.0930 8 7 6.9964 1.8390 0.1058 9 6 6.8384 3.2998 0.0993 10 6 7.7403 3.8883 -0.9901 11 6 9.1779 3.4127 -0.7686 12 6 10.0739 4.0172 -1.8188 13 1 10.6272 3.3771 -2.4901 14 6 10.1872 5.3874 -1.9227 15 7 9.5138 6.1667 -1.1051 16 14 11.2983 6.1366 -3.2241 17 1 10.8398 5.7114 -4.5710 18 1 11.2444 7.6175 -3.1280 19 1 12.6936 5.6766 -3.0082 20 6 9.2332 1.8865 -0.8683 21 6 8.3482 1.2752 0.2224 22 6 3.5799 -0.6915 -0.0051 23 6 2.2675 -1.1185 0.0005 24 6 1.8109 -2.5102 0.0006 25 8 2.6222 -3.4163 0.0015 26 8 0.4906 -2.7869 0.0007 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3632 -0.8903 0.5135 29 1 -0.3634 0.8897 0.5142 30 1 1.9095 2.1265 0.0004 31 1 4.5627 2.5203 0.0010 32 1 5.7993 3.5539 -0.1098 33 1 7.1272 3.7028 1.0701 34 1 7.7057 4.9768 -0.9421 35 1 7.3936 3.5556 -1.9684 36 1 9.5154 3.7245 0.2198 37 1 9.5932 7.1307 -1.1784 38 1 10.2612 1.5501 -0.7337 39 1 8.8727 1.5722 -1.8478 40 1 8.7601 1.5132 1.2032 41 1 8.3048 0.1933 0.0972 42 1 4.4589 -1.3191 -0.0103 43 1 0.2376 -3.7203 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600962904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:18 Heat of formation + Delta-G solvation = -60.059725 kcal Electronic energy + Delta-G solvation = -26896.701884 eV Core-core repulsion = 22943.181384 eV Total energy + Delta-G solvation = -3953.520500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69310 -40.08683 -39.55647 -37.01830 -36.31430 -34.80209 -33.57686 -32.21873 -30.96299 -30.07780 -29.36832 -26.64728 -25.88601 -24.27148 -23.05272 -22.39311 -21.05559 -20.57731 -19.79319 -18.64343 -18.53216 -17.77106 -17.25957 -16.24700 -16.21318 -15.73118 -15.53669 -15.24260 -14.90699 -14.65241 -14.37239 -13.94699 -13.70490 -13.29796 -13.16284 -13.02260 -12.70974 -12.62819 -12.50535 -12.32545 -12.29775 -11.80226 -11.60286 -11.31683 -10.96094 -10.93744 -10.69867 -10.55594 -10.38634 -10.15539 -9.67895 -9.52130 -9.16577 -8.96092 -8.61108 -8.38985 -8.11417 -7.58114 -6.04360 -4.10063 1.05221 2.41429 2.42803 2.71155 3.02285 3.10236 3.29499 3.33914 3.37531 3.69572 4.17212 4.40331 4.53436 4.67333 4.87153 4.97482 5.20791 5.24668 5.30628 5.48743 5.71267 5.74354 5.88138 5.95275 6.05685 6.17510 6.19663 6.24935 6.33927 6.49122 6.58039 6.68036 6.88175 6.91241 6.99924 7.10002 7.14204 7.21069 7.42323 7.65861 7.68951 7.91449 8.01907 8.23328 8.39653 8.88035 8.93213 9.55019 11.01141 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027583 B = 0.002505 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.856627 B =11173.243109 C =11707.163050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.419 5.419 3 C -0.009 4.009 4 C 0.087 3.913 5 N -0.667 5.667 6 C 0.707 3.293 7 O -0.586 6.586 8 N -0.614 5.614 9 C 0.109 3.891 10 C -0.124 4.124 11 C 0.049 3.951 12 C -0.511 4.511 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.125 4.125 21 C 0.129 3.871 22 C -0.089 4.089 23 C -0.047 4.047 24 C 0.556 3.444 25 O -0.503 6.503 26 O -0.523 6.523 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.174 0.826 31 H 0.407 0.593 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.178 0.822 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.588 -8.594 4.551 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.097 5.097 3 C -0.147 4.147 4 C -0.014 4.014 5 N -0.316 5.316 6 C 0.409 3.591 7 O -0.464 6.464 8 N -0.350 5.350 9 C -0.014 4.014 10 C -0.163 4.163 11 C 0.031 3.969 12 C -0.549 4.549 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.163 4.163 21 C 0.007 3.993 22 C -0.118 4.118 23 C -0.157 4.157 24 C 0.401 3.599 25 O -0.390 6.390 26 O -0.336 6.336 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.192 0.808 31 H 0.245 0.755 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.195 0.805 43 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -20.470 -9.110 4.547 22.862 hybrid contribution 0.271 0.674 -0.806 1.085 sum -20.199 -8.436 3.741 22.207 Atomic orbital electron populations 1.22221 0.75785 1.04974 1.03818 1.43649 1.06458 1.04657 1.54893 1.21295 0.88649 0.91901 1.12824 1.16634 0.85629 0.90392 1.08764 1.42203 1.02774 1.08984 1.77661 1.15742 0.80084 0.85170 0.78114 1.90798 1.84685 1.13021 1.57905 1.47434 1.05619 1.06579 1.75406 1.21940 0.99227 0.78629 1.01568 1.22030 0.96158 1.03572 0.94508 1.18620 0.92187 0.88635 0.97475 1.21186 1.25678 0.91371 1.16685 0.92725 1.24950 0.95773 0.97296 0.95940 1.69814 1.41774 1.04055 1.37578 0.86678 0.81324 0.77910 0.82205 1.20360 1.21345 1.20287 1.22028 0.97699 0.99462 0.97096 1.21616 0.79836 0.98612 0.99249 1.21788 0.94858 0.93546 1.01572 1.19231 0.90340 0.83820 1.22266 1.19434 0.79817 0.87951 0.72696 1.90986 1.54950 1.46456 1.46634 1.84606 1.26511 1.35817 1.86672 0.90599 0.88352 0.89687 0.80843 0.75534 0.92607 0.91729 0.87758 0.94204 0.95411 0.92951 0.92060 0.92879 0.92266 0.90040 0.80477 0.72847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.56 59.85 0.63 1.05 16 2 N -0.42 -4.19 3.17 -120.05 -0.38 -4.57 16 3 C -0.01 -0.10 11.41 -16.61 -0.19 -0.28 16 4 C 0.09 1.21 6.91 -83.86 -0.58 0.63 16 5 N -0.67 -9.66 5.38 -14.39 -0.08 -9.73 16 6 C 0.71 12.75 8.26 -86.92 -0.72 12.03 16 7 O -0.59 -12.16 12.96 5.28 0.07 -12.09 16 8 N -0.61 -10.96 2.97 -178.50 -0.53 -11.50 16 9 C 0.11 1.85 6.39 -3.71 -0.02 1.83 16 10 C -0.12 -2.65 5.15 -26.62 -0.14 -2.79 16 11 C 0.05 1.15 2.06 -91.72 -0.19 0.96 16 12 C -0.51 -13.47 8.56 -34.44 -0.29 -13.77 16 13 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 15 N -0.89 -24.06 11.31 55.43 0.63 -23.44 16 16 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 21 C 0.13 2.36 6.44 -3.71 -0.02 2.34 16 22 C -0.09 -1.40 9.44 -38.95 -0.37 -1.76 16 23 C -0.05 -0.61 6.88 -82.02 -0.56 -1.17 16 24 C 0.56 6.76 8.29 34.04 0.28 7.04 16 25 O -0.50 -7.83 17.67 -19.36 -0.34 -8.17 16 26 O -0.52 -3.84 10.85 -41.04 -0.45 -4.29 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 0.54 6.14 -51.93 -0.32 0.22 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.41 4.81 6.32 -40.82 -0.26 4.55 16 32 H 0.06 0.77 5.65 -51.93 -0.29 0.48 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 2.47 6.03 -51.92 -0.31 2.16 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 42 H 0.18 3.30 5.99 -52.48 -0.31 2.99 16 43 H 0.41 1.22 9.11 45.56 0.42 1.64 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -33.52 351.59 -8.00 -41.53 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.79 Total: 6.31 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -2.41 Total: 4.96 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.36 Total: -49.23 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.72 Total: -24.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.52 -8.00 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600962904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.533 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds