Wall clock time and date at job start Tue Mar 31 2020 13:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35836 * 125.64863 * 2 1 4 4 C 1.35920 * 108.79430 * 179.97438 * 3 2 1 5 5 N 1.40788 * 126.11596 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99812 * 180.02562 * 5 4 3 7 7 O 1.21595 * 120.00623 * 5.10601 * 6 5 4 8 8 N 1.34782 * 119.99378 * 185.10663 * 6 5 4 9 9 C 1.46924 * 120.63318 * 354.48694 * 8 6 5 10 10 C 1.53186 * 108.77376 * 233.87972 * 9 8 6 11 11 C 1.53038 * 109.31520 * 305.36388 * 10 9 8 12 12 C 1.50704 * 109.44928 * 181.37984 * 11 10 9 13 13 H 1.08005 * 120.00035 * 239.94101 * 12 11 10 14 14 C 1.37875 * 119.99968 * 59.93971 * 12 11 10 15 15 N 1.31503 * 120.00119 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99671 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47392 * 60.00318 * 16 14 12 18 18 H 1.48505 * 109.47049 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47468 * 299.99988 * 16 14 12 20 20 C 1.53049 * 109.53821 * 61.36681 * 11 10 9 21 21 C 1.46934 * 120.62609 * 174.76452 * 8 6 5 22 22 C 1.40143 * 107.76925 * 0.26162 * 4 3 2 23 23 C 1.37657 * 125.65733 * 179.97438 * 2 1 3 24 24 C 1.46465 * 126.17858 * 0.02562 * 23 2 1 25 25 O 1.21630 * 119.99821 * 180.02562 * 24 23 2 26 26 O 1.34900 * 120.00381 * 359.97438 * 24 23 2 27 27 H 1.08998 * 109.46806 * 89.98156 * 1 2 3 28 28 H 1.09004 * 109.46576 * 209.97455 * 1 2 3 29 29 H 1.08995 * 109.47562 * 329.97469 * 1 2 3 30 30 H 1.07999 * 125.59954 * 0.02562 * 3 2 1 31 31 H 0.97000 * 120.00041 * 359.97438 * 5 4 3 32 32 H 1.08992 * 109.58521 * 353.67072 * 9 8 6 33 33 H 1.09006 * 109.58115 * 114.09548 * 9 8 6 34 34 H 1.09008 * 109.49547 * 185.41396 * 10 9 8 35 35 H 1.09002 * 109.49643 * 65.31714 * 10 9 8 36 36 H 1.08996 * 109.46185 * 301.34598 * 11 10 9 37 37 H 0.97005 * 120.00503 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.49725 * 178.68397 * 20 11 10 39 39 H 1.09003 * 109.51897 * 58.59933 * 20 11 10 40 40 H 1.09001 * 109.58454 * 245.90487 * 21 8 6 41 41 H 1.08999 * 109.58365 * 6.18545 * 21 8 6 42 42 H 1.08005 * 126.44407 * 179.73191 * 22 4 3 43 43 H 0.96700 * 117.00498 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2567 1.1038 0.0000 4 6 3.5575 0.7097 0.0006 5 7 4.6814 1.5576 0.0013 6 6 5.9223 1.0316 0.0013 7 8 6.0729 -0.1713 -0.0930 8 7 6.9964 1.8390 0.1058 9 6 6.8384 3.2998 0.0993 10 6 7.7403 3.8883 -0.9901 11 6 9.1779 3.4127 -0.7686 12 6 10.0739 4.0172 -1.8188 13 1 10.6272 3.3771 -2.4901 14 6 10.1872 5.3874 -1.9227 15 7 9.5138 6.1667 -1.1051 16 14 11.2983 6.1366 -3.2241 17 1 10.8398 5.7114 -4.5710 18 1 11.2444 7.6175 -3.1280 19 1 12.6936 5.6766 -3.0082 20 6 9.2332 1.8865 -0.8683 21 6 8.3482 1.2752 0.2224 22 6 3.5799 -0.6915 -0.0051 23 6 2.2675 -1.1185 0.0005 24 6 1.8109 -2.5102 0.0006 25 8 2.6222 -3.4163 0.0015 26 8 0.4906 -2.7869 0.0007 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3632 -0.8903 0.5135 29 1 -0.3634 0.8897 0.5142 30 1 1.9095 2.1265 0.0004 31 1 4.5627 2.5203 0.0010 32 1 5.7993 3.5539 -0.1098 33 1 7.1272 3.7028 1.0701 34 1 7.7057 4.9768 -0.9421 35 1 7.3936 3.5556 -1.9684 36 1 9.5154 3.7245 0.2198 37 1 9.5932 7.1307 -1.1784 38 1 10.2612 1.5501 -0.7337 39 1 8.8727 1.5722 -1.8478 40 1 8.7601 1.5132 1.2032 41 1 8.3048 0.1933 0.0972 42 1 4.4589 -1.3191 -0.0103 43 1 0.2376 -3.7203 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600962904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:18 Heat of formation + Delta-G solvation = -82.598801 kcal Electronic energy + Delta-G solvation = -26897.679252 eV Core-core repulsion = 22943.181384 eV Total energy + Delta-G solvation = -3954.497868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.63564 -41.33238 -40.56229 -38.55990 -37.15698 -36.00460 -35.33350 -33.41967 -32.43304 -31.63641 -30.35684 -28.07906 -26.97803 -25.37222 -24.55917 -23.93596 -22.33026 -21.51857 -21.14967 -20.02669 -19.55567 -18.85019 -18.45253 -18.09648 -17.08883 -16.98613 -16.53098 -16.47610 -16.36693 -15.75995 -15.56581 -15.20447 -14.88662 -14.71858 -14.57403 -14.39709 -14.16885 -14.01566 -13.41451 -13.34644 -13.21719 -13.09281 -12.98157 -12.78982 -12.65515 -12.46723 -12.12321 -11.97864 -11.93695 -11.65050 -11.44172 -11.08237 -10.97767 -10.74994 -10.37153 -9.65221 -9.50003 -8.62917 -8.05757 -6.18266 0.12250 1.41458 1.43923 1.44631 1.47138 1.51796 1.79119 1.98923 2.13660 2.41276 2.46304 2.95069 3.20622 3.85416 4.09620 4.11906 4.16007 4.24961 4.36278 4.43881 4.50098 4.54836 4.60516 4.70687 4.75630 4.84995 4.91183 4.99347 5.02201 5.19787 5.23994 5.27989 5.43753 5.45764 5.55569 5.68063 5.69776 5.91558 6.02293 6.10818 6.16363 6.22280 6.42654 6.90215 6.92335 6.95827 7.48888 7.54623 8.97310 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027583 B = 0.002505 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.856627 B =11173.243109 C =11707.163050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.404 5.404 3 C 0.030 3.970 4 C 0.049 3.951 5 N -0.651 5.651 6 C 0.701 3.299 7 O -0.619 6.619 8 N -0.617 5.617 9 C 0.119 3.881 10 C -0.115 4.115 11 C 0.046 3.954 12 C -0.536 4.536 13 H 0.044 0.956 14 C 0.020 3.980 15 N -0.910 5.910 16 Si 0.946 3.054 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.276 1.276 20 C -0.114 4.114 21 C 0.135 3.865 22 C -0.128 4.128 23 C -0.060 4.060 24 C 0.564 3.436 25 O -0.549 6.549 26 O -0.500 6.500 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.224 0.776 31 H 0.420 0.580 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.025 0.975 36 H 0.007 0.993 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.136 0.864 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.753 -7.322 4.745 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.079 5.079 3 C -0.110 4.110 4 C -0.051 4.051 5 N -0.302 5.302 6 C 0.403 3.597 7 O -0.500 6.500 8 N -0.353 5.353 9 C -0.003 4.003 10 C -0.153 4.153 11 C 0.028 3.972 12 C -0.574 4.574 13 H 0.063 0.937 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.773 3.227 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.201 1.201 20 C -0.152 4.152 21 C 0.013 3.987 22 C -0.158 4.158 23 C -0.171 4.171 24 C 0.410 3.590 25 O -0.440 6.440 26 O -0.314 6.314 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.240 0.760 31 H 0.261 0.739 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.153 0.847 43 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -23.727 -7.836 4.744 25.434 hybrid contribution 1.117 0.255 -0.875 1.442 sum -22.610 -7.581 3.869 24.159 Atomic orbital electron populations 1.22634 0.72646 1.06879 1.05417 1.44019 1.08120 1.03524 1.52195 1.21945 0.86943 0.93633 1.08485 1.16873 0.86850 0.89654 1.11692 1.41919 1.01775 1.09678 1.76828 1.15914 0.81027 0.84712 0.78022 1.90805 1.85335 1.14582 1.59276 1.47402 1.05451 1.06824 1.75640 1.21841 1.00423 0.77820 1.00205 1.21790 0.95853 1.02284 0.95409 1.18598 0.93020 0.90239 0.95387 1.21519 1.26520 0.91892 1.17440 0.93728 1.25583 0.96991 0.97674 0.97684 1.69914 1.42401 1.04164 1.38432 0.85802 0.79668 0.77318 0.79953 1.20243 1.20684 1.20124 1.21873 0.98471 0.97713 0.97183 1.21481 0.80063 0.98253 0.98951 1.21514 0.95076 0.94631 1.04559 1.19125 0.90103 0.85145 1.22749 1.19351 0.80702 0.87273 0.71634 1.90968 1.56491 1.47637 1.48940 1.84544 1.23451 1.37878 1.85571 0.89042 0.88040 0.86341 0.75998 0.73910 0.88814 0.90954 0.89877 0.95623 0.97510 0.92869 0.91788 0.94349 0.90905 0.90367 0.84654 0.70329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 127.77 1.35 1.76 16 2 N -0.40 -6.69 3.17 -533.71 -1.69 -8.38 16 3 C 0.03 0.49 11.41 83.53 0.95 1.44 16 4 C 0.05 1.30 6.91 37.62 0.26 1.56 16 5 N -0.65 -18.00 5.38 -317.69 -1.71 -19.71 16 6 C 0.70 25.40 8.26 179.05 1.48 26.88 16 7 O -0.62 -26.86 12.96 -4.01 -0.05 -26.91 16 8 N -0.62 -21.88 2.97 -836.90 -2.49 -24.37 16 9 C 0.12 3.91 6.39 86.36 0.55 4.46 16 10 C -0.11 -4.92 5.15 30.67 0.16 -4.76 16 11 C 0.05 2.20 2.06 -11.51 -0.02 2.17 16 12 C -0.54 -28.83 8.56 25.60 0.22 -28.61 16 13 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 14 C 0.02 1.06 5.30 84.66 0.45 1.50 16 15 N -0.91 -49.27 11.31 21.44 0.24 -49.03 16 16 Si 0.95 42.62 29.54 68.60 2.03 44.64 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 C -0.11 -4.77 5.30 30.67 0.16 -4.61 16 21 C 0.14 5.01 6.44 86.36 0.56 5.57 16 22 C -0.13 -4.17 9.44 22.68 0.21 -3.96 16 23 C -0.06 -1.52 6.88 40.32 0.28 -1.24 16 24 C 0.56 13.48 8.29 69.97 0.58 14.06 16 25 O -0.55 -17.81 17.67 19.41 0.34 -17.46 16 26 O -0.50 -6.18 10.85 -58.15 -0.63 -6.81 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.10 0.67 6.14 -2.38 -0.01 0.65 16 29 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.22 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.42 8.73 6.32 -92.71 -0.59 8.14 16 32 H 0.09 2.34 5.65 -2.39 -0.01 2.33 16 33 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.08 3.96 6.03 -2.38 -0.01 3.94 16 35 H 0.02 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16 38 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.08 2.96 6.99 -2.39 -0.02 2.94 16 42 H 0.14 5.54 5.99 -2.91 -0.02 5.52 16 43 H 0.43 1.52 9.11 -74.06 -0.67 0.85 16 Total: -1.00 -77.75 351.59 3.04 -74.71 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.19 Total: 17.07 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 7.19 Total: 16.24 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -5.65 Total: -101.48 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.34 Total: -51.18 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -77.75 3.04 -74.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600962904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.891 kcal (2) G-P(sol) polarization free energy of solvation -77.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds