Wall clock time and date at job start Tue Mar 31 2020 13:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35830 * 125.65208 * 2 1 4 4 C 1.35921 * 108.78997 * 180.13147 * 3 2 1 5 5 N 1.40788 * 126.11031 * 179.83531 * 4 3 2 6 6 C 1.34775 * 119.99793 * 179.71860 * 5 4 3 7 7 O 1.21597 * 120.00379 * 5.11002 * 6 5 4 8 8 N 1.34779 * 119.99704 * 185.11520 * 6 5 4 9 9 C 1.46925 * 120.63298 * 354.76597 * 8 6 5 10 10 C 1.53191 * 108.77592 * 233.33601 * 9 8 6 11 11 C 1.53044 * 109.31490 * 305.36454 * 10 9 8 12 12 C 1.53046 * 109.53681 * 61.36349 * 11 10 9 13 13 H 1.09000 * 109.49332 * 58.59029 * 12 11 10 14 14 C 1.50701 * 109.49645 * 178.68898 * 12 11 10 15 15 H 1.08000 * 119.99917 * 359.97438 * 14 12 11 16 16 C 1.37879 * 120.00092 * 180.02562 * 14 12 11 17 17 N 1.31509 * 119.99573 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99991 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47275 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46968 * 119.99797 * 18 16 14 21 21 H 1.48502 * 109.47141 * 239.99709 * 18 16 14 22 22 C 1.46929 * 120.63032 * 174.48889 * 8 6 5 23 23 C 1.40141 * 107.77389 * 359.57132 * 4 3 2 24 24 C 1.37652 * 125.64968 * 179.64688 * 2 1 3 25 25 C 1.46470 * 126.18451 * 0.02562 * 24 2 1 26 26 O 1.21633 * 120.00249 * 180.02562 * 25 24 2 27 27 O 1.34900 * 119.99814 * 0.02562 * 25 24 2 28 28 H 1.08995 * 109.47515 * 270.34675 * 1 2 3 29 29 H 1.08999 * 109.47243 * 30.35114 * 1 2 3 30 30 H 1.09008 * 109.46888 * 150.35126 * 1 2 3 31 31 H 1.08003 * 125.60340 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00160 * 359.71302 * 5 4 3 33 33 H 1.08995 * 109.58374 * 353.12070 * 9 8 6 34 34 H 1.08999 * 109.58940 * 113.40867 * 9 8 6 35 35 H 1.09001 * 109.49743 * 65.31533 * 10 9 8 36 36 H 1.09000 * 109.50187 * 185.41067 * 10 9 8 37 37 H 1.08996 * 109.46019 * 181.38563 * 11 10 9 38 38 H 1.09005 * 109.45775 * 301.36136 * 11 10 9 39 39 H 0.97007 * 119.99902 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.58829 * 246.45593 * 22 8 6 41 41 H 1.09004 * 109.58421 * 6.87575 * 22 8 6 42 42 H 1.08001 * 126.44394 * 180.26327 * 23 4 3 43 43 H 0.96701 * 116.99745 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2567 1.1037 0.0000 4 6 3.5575 0.7095 -0.0030 5 7 4.6815 1.5573 -0.0072 6 6 5.9223 1.0312 -0.0041 7 8 6.0728 -0.1722 -0.0914 8 7 6.9965 1.8392 0.0960 9 6 6.8380 3.2998 0.0872 10 6 7.7469 3.8879 -0.9967 11 6 9.1833 3.4129 -0.7653 12 6 9.2397 1.8867 -0.8634 13 1 8.8856 1.5719 -1.8451 14 6 10.6599 1.4222 -0.6675 15 1 11.4443 2.1432 -0.4910 16 6 10.9579 0.0768 -0.7145 17 7 10.0027 -0.8011 -0.9298 18 14 12.7184 -0.4988 -0.4723 19 1 13.5974 0.6771 -0.2488 20 1 12.7869 -1.3997 0.7062 21 1 13.1706 -1.2313 -1.6823 22 6 8.3477 1.2760 0.2220 23 6 3.5798 -0.6918 0.0051 24 6 2.2673 -1.1185 0.0069 25 6 1.8107 -2.5102 0.0149 26 8 2.6219 -3.4165 0.0211 27 8 0.4903 -2.7868 0.0156 28 1 -0.3634 0.0062 1.0276 29 1 -0.3634 0.8868 -0.5193 30 1 -0.3633 -0.8932 -0.5084 31 1 1.9097 2.1265 0.0004 32 1 4.5628 2.5200 -0.0124 33 1 5.8002 3.5534 -0.1290 34 1 7.1178 3.7036 1.0602 35 1 7.4069 3.5542 -1.9771 36 1 7.7117 4.9763 -0.9500 37 1 9.8363 3.8498 -1.5208 38 1 9.5140 3.7254 0.2252 39 1 10.2123 -1.7476 -0.9626 40 1 8.7529 1.5149 1.2052 41 1 8.3059 0.1942 0.0947 42 1 4.4588 -1.3194 0.0092 43 1 0.2374 -3.7201 0.0214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600962959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:21 Heat of formation + Delta-G solvation = -57.487260 kcal Electronic energy + Delta-G solvation = -27241.819078 eV Core-core repulsion = 23288.410128 eV Total energy + Delta-G solvation = -3953.408950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55867 -39.89300 -39.38200 -36.92456 -36.18647 -34.58160 -33.37070 -32.12905 -31.41303 -29.78346 -29.23490 -26.36719 -25.04970 -24.66043 -23.75952 -21.84681 -21.01720 -20.45411 -19.64192 -18.55912 -18.39958 -17.64007 -17.15286 -16.13917 -16.08547 -15.54906 -15.36798 -15.05567 -14.74372 -14.49368 -14.14271 -13.82712 -13.73660 -13.48786 -13.15203 -12.89152 -12.61337 -12.54284 -12.44000 -12.18048 -12.15980 -11.90151 -11.67383 -10.97115 -10.89622 -10.81787 -10.51401 -10.41937 -10.35478 -10.18236 -9.84367 -9.31108 -9.06718 -8.90583 -8.47883 -8.38437 -7.85681 -7.40658 -5.93368 -4.02841 1.17849 2.53925 2.57472 2.84498 3.17908 3.28614 3.35865 3.43143 3.45689 3.95998 4.33721 4.49007 4.61659 4.75825 4.94458 5.06001 5.23052 5.29398 5.36128 5.40622 5.49575 5.62289 5.85609 5.93989 6.02154 6.15910 6.30965 6.32185 6.49301 6.61226 6.67191 6.74040 6.85396 7.00380 7.04129 7.08206 7.26547 7.36601 7.50470 7.78127 7.81962 7.96029 8.09996 8.44859 8.53009 9.00904 9.20800 9.62819 11.11532 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.003235 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.987520 B = 8652.779663 C =10205.762354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.422 5.422 3 C -0.016 4.016 4 C 0.091 3.909 5 N -0.673 5.673 6 C 0.700 3.300 7 O -0.562 6.562 8 N -0.618 5.618 9 C 0.114 3.886 10 C -0.133 4.133 11 C -0.110 4.110 12 C 0.039 3.961 13 H 0.029 0.971 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.876 5.876 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.128 3.872 23 C -0.087 4.087 24 C -0.046 4.046 25 C 0.555 3.445 26 O -0.499 6.499 27 O -0.524 6.524 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.172 0.828 32 H 0.400 0.600 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.263 0.737 40 H 0.041 0.959 41 H 0.125 0.875 42 H 0.180 0.820 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.892 6.856 2.599 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.099 5.099 3 C -0.153 4.153 4 C -0.011 4.011 5 N -0.323 5.323 6 C 0.402 3.598 7 O -0.438 6.438 8 N -0.355 5.355 9 C -0.010 4.010 10 C -0.172 4.172 11 C -0.148 4.148 12 C 0.020 3.980 13 H 0.047 0.953 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.719 3.281 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.211 1.211 22 C 0.008 3.992 23 C -0.116 4.116 24 C -0.156 4.156 25 C 0.399 3.601 26 O -0.386 6.386 27 O -0.337 6.337 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.189 0.811 32 H 0.237 0.763 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.142 0.858 42 H 0.197 0.803 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -21.756 5.899 2.534 22.684 hybrid contribution 0.618 -0.229 0.116 0.669 sum -21.139 5.670 2.650 22.046 Atomic orbital electron populations 1.22189 0.75976 1.04895 1.03614 1.43609 1.06324 1.04667 1.55311 1.21216 0.88655 0.91741 1.13673 1.16651 0.85626 0.90484 1.08324 1.42325 1.03058 1.08481 1.78410 1.15885 0.79772 0.85628 0.78558 1.90876 1.84101 1.12663 1.56118 1.47811 1.07445 1.04733 1.75510 1.21525 0.98292 0.81773 0.99397 1.21946 0.97854 0.98815 0.98549 1.21622 0.93104 0.99681 1.00380 1.18988 0.94904 0.88816 0.95279 0.95253 1.21092 0.92652 0.91958 1.50384 0.92365 1.25062 0.97069 0.97026 0.94889 1.69902 1.31477 1.01888 1.48092 0.86558 0.85082 0.78708 0.77775 1.19860 1.20973 1.21056 1.22244 0.75572 1.03219 0.98160 1.21883 0.94940 0.93702 1.01028 1.19242 0.90341 0.83776 1.22218 1.19449 0.79790 0.87996 0.72835 1.91006 1.54896 1.46402 1.46345 1.84600 1.26589 1.35763 1.86781 0.90777 0.89850 0.88383 0.81095 0.76270 0.92269 0.91936 0.92114 0.92270 0.93032 0.93172 0.92646 0.94081 0.85764 0.80274 0.72918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.56 59.85 0.63 1.11 16 2 N -0.42 -4.62 3.17 -120.04 -0.38 -5.00 16 3 C -0.02 -0.17 11.42 -16.61 -0.19 -0.36 16 4 C 0.09 1.38 6.91 -83.86 -0.58 0.80 16 5 N -0.67 -10.40 5.38 -14.39 -0.08 -10.48 16 6 C 0.70 14.41 8.26 -86.92 -0.72 13.69 16 7 O -0.56 -14.10 12.96 5.28 0.07 -14.04 16 8 N -0.62 -12.34 2.97 -178.50 -0.53 -12.87 16 9 C 0.11 1.70 6.39 -3.71 -0.02 1.67 16 10 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 11 C -0.11 -2.16 5.11 -26.68 -0.14 -2.29 16 12 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 14 C -0.52 -14.19 8.56 -34.44 -0.29 -14.49 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -25.95 11.40 55.43 0.63 -25.32 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.13 3.12 5.41 -3.71 -0.02 3.10 16 23 C -0.09 -1.54 9.44 -38.95 -0.37 -1.90 16 24 C -0.05 -0.67 6.88 -82.02 -0.56 -1.23 16 25 C 0.55 7.62 8.29 34.05 0.28 7.90 16 26 O -0.50 -8.76 17.67 -19.37 -0.34 -9.10 16 27 O -0.52 -4.49 10.85 -41.04 -0.45 -4.93 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.62 6.14 -51.92 -0.32 0.30 16 31 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.40 4.65 6.32 -40.82 -0.26 4.39 16 33 H 0.06 0.67 5.65 -51.93 -0.29 0.37 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.12 3.56 5.12 -51.93 -0.27 3.30 16 42 H 0.18 3.87 5.99 -52.49 -0.31 3.55 16 43 H 0.41 1.72 9.11 45.56 0.42 2.14 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -36.30 351.83 -8.04 -44.34 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.80 Total: 7.46 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.44 Total: 8.17 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.36 Total: -53.67 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.72 Total: -28.07 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.30 -8.04 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600962959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.143 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds