Wall clock time and date at job start Tue Mar 31 2020 13:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35830 * 125.65208 * 2 1 4 4 C 1.35921 * 108.78997 * 180.13147 * 3 2 1 5 5 N 1.40788 * 126.11031 * 179.83531 * 4 3 2 6 6 C 1.34775 * 119.99793 * 179.71860 * 5 4 3 7 7 O 1.21597 * 120.00379 * 5.11002 * 6 5 4 8 8 N 1.34779 * 119.99704 * 185.11520 * 6 5 4 9 9 C 1.46925 * 120.63298 * 354.76597 * 8 6 5 10 10 C 1.53191 * 108.77592 * 233.33601 * 9 8 6 11 11 C 1.53044 * 109.31490 * 305.36454 * 10 9 8 12 12 C 1.53046 * 109.53681 * 61.36349 * 11 10 9 13 13 H 1.09000 * 109.49332 * 58.59029 * 12 11 10 14 14 C 1.50701 * 109.49645 * 178.68898 * 12 11 10 15 15 H 1.08000 * 119.99917 * 359.97438 * 14 12 11 16 16 C 1.37879 * 120.00092 * 180.02562 * 14 12 11 17 17 N 1.31509 * 119.99573 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99991 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47275 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46968 * 119.99797 * 18 16 14 21 21 H 1.48502 * 109.47141 * 239.99709 * 18 16 14 22 22 C 1.46929 * 120.63032 * 174.48889 * 8 6 5 23 23 C 1.40141 * 107.77389 * 359.57132 * 4 3 2 24 24 C 1.37652 * 125.64968 * 179.64688 * 2 1 3 25 25 C 1.46470 * 126.18451 * 0.02562 * 24 2 1 26 26 O 1.21633 * 120.00249 * 180.02562 * 25 24 2 27 27 O 1.34900 * 119.99814 * 0.02562 * 25 24 2 28 28 H 1.08995 * 109.47515 * 270.34675 * 1 2 3 29 29 H 1.08999 * 109.47243 * 30.35114 * 1 2 3 30 30 H 1.09008 * 109.46888 * 150.35126 * 1 2 3 31 31 H 1.08003 * 125.60340 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00160 * 359.71302 * 5 4 3 33 33 H 1.08995 * 109.58374 * 353.12070 * 9 8 6 34 34 H 1.08999 * 109.58940 * 113.40867 * 9 8 6 35 35 H 1.09001 * 109.49743 * 65.31533 * 10 9 8 36 36 H 1.09000 * 109.50187 * 185.41067 * 10 9 8 37 37 H 1.08996 * 109.46019 * 181.38563 * 11 10 9 38 38 H 1.09005 * 109.45775 * 301.36136 * 11 10 9 39 39 H 0.97007 * 119.99902 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.58829 * 246.45593 * 22 8 6 41 41 H 1.09004 * 109.58421 * 6.87575 * 22 8 6 42 42 H 1.08001 * 126.44394 * 180.26327 * 23 4 3 43 43 H 0.96701 * 116.99745 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2567 1.1037 0.0000 4 6 3.5575 0.7095 -0.0030 5 7 4.6815 1.5573 -0.0072 6 6 5.9223 1.0312 -0.0041 7 8 6.0728 -0.1722 -0.0914 8 7 6.9965 1.8392 0.0960 9 6 6.8380 3.2998 0.0872 10 6 7.7469 3.8879 -0.9967 11 6 9.1833 3.4129 -0.7653 12 6 9.2397 1.8867 -0.8634 13 1 8.8856 1.5719 -1.8451 14 6 10.6599 1.4222 -0.6675 15 1 11.4443 2.1432 -0.4910 16 6 10.9579 0.0768 -0.7145 17 7 10.0027 -0.8011 -0.9298 18 14 12.7184 -0.4988 -0.4723 19 1 13.5974 0.6771 -0.2488 20 1 12.7869 -1.3997 0.7062 21 1 13.1706 -1.2313 -1.6823 22 6 8.3477 1.2760 0.2220 23 6 3.5798 -0.6918 0.0051 24 6 2.2673 -1.1185 0.0069 25 6 1.8107 -2.5102 0.0149 26 8 2.6219 -3.4165 0.0211 27 8 0.4903 -2.7868 0.0156 28 1 -0.3634 0.0062 1.0276 29 1 -0.3634 0.8868 -0.5193 30 1 -0.3633 -0.8932 -0.5084 31 1 1.9097 2.1265 0.0004 32 1 4.5628 2.5200 -0.0124 33 1 5.8002 3.5534 -0.1290 34 1 7.1178 3.7036 1.0602 35 1 7.4069 3.5542 -1.9771 36 1 7.7117 4.9763 -0.9500 37 1 9.8363 3.8498 -1.5208 38 1 9.5140 3.7254 0.2252 39 1 10.2123 -1.7476 -0.9626 40 1 8.7529 1.5149 1.2052 41 1 8.3059 0.1942 0.0947 42 1 4.4588 -1.3194 0.0092 43 1 0.2374 -3.7201 0.0214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600962959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:21 Heat of formation + Delta-G solvation = -84.693370 kcal Electronic energy + Delta-G solvation = -27242.998823 eV Core-core repulsion = 23288.410128 eV Total energy + Delta-G solvation = -3954.588695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.62077 -41.25516 -40.55997 -38.50503 -37.17101 -35.98874 -35.19158 -33.62388 -32.63751 -31.48603 -30.36092 -27.35844 -26.91001 -26.08181 -24.91027 -23.45461 -22.33480 -21.51773 -21.10997 -20.00316 -19.52841 -18.85413 -18.49112 -18.00837 -17.08532 -16.89651 -16.53226 -16.37332 -16.33802 -15.73076 -15.47236 -15.19275 -15.12858 -14.69558 -14.56484 -14.38099 -14.10323 -13.99138 -13.52698 -13.38805 -13.30950 -12.98988 -12.90735 -12.67951 -12.63256 -12.26667 -12.19544 -11.98576 -11.80930 -11.66291 -11.56261 -11.08646 -10.91724 -10.76175 -10.50704 -9.59590 -9.41705 -8.58652 -8.08073 -6.26034 0.11338 1.39822 1.41552 1.45775 1.52605 1.53931 1.80098 1.99482 2.16204 2.43121 2.49002 3.06460 3.21479 3.85682 4.06194 4.12280 4.16038 4.20649 4.31299 4.44427 4.56292 4.63546 4.71625 4.77927 4.82433 4.84889 4.91287 5.02476 5.13943 5.24338 5.30459 5.31629 5.35169 5.45145 5.58200 5.67736 5.70910 5.93016 5.93456 6.01560 6.21616 6.25910 6.37815 6.88238 6.91170 7.13560 7.44299 7.69253 8.94742 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.003235 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.987520 B = 8652.779663 C =10205.762354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.402 5.402 3 C 0.036 3.964 4 C 0.049 3.951 5 N -0.647 5.647 6 C 0.690 3.310 7 O -0.622 6.622 8 N -0.623 5.623 9 C 0.108 3.892 10 C -0.125 4.125 11 C -0.105 4.105 12 C 0.038 3.962 13 H -0.017 1.017 14 C -0.534 4.534 15 H 0.064 0.936 16 C 0.007 3.993 17 N -0.915 5.915 18 Si 0.957 3.043 19 H -0.257 1.257 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.143 3.857 23 C -0.136 4.136 24 C -0.061 4.061 25 C 0.563 3.437 26 O -0.553 6.553 27 O -0.497 6.497 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.233 0.767 32 H 0.422 0.578 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.258 0.742 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.123 0.877 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.131 10.950 3.171 27.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.077 5.077 3 C -0.103 4.103 4 C -0.051 4.051 5 N -0.299 5.299 6 C 0.392 3.608 7 O -0.501 6.501 8 N -0.359 5.359 9 C -0.014 4.014 10 C -0.163 4.163 11 C -0.143 4.143 12 C 0.019 3.981 13 H 0.001 0.999 14 C -0.572 4.572 15 H 0.082 0.918 16 C -0.192 4.192 17 N -0.554 5.554 18 Si 0.783 3.217 19 H -0.181 1.181 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.020 3.980 23 C -0.165 4.165 24 C -0.172 4.172 25 C 0.409 3.591 26 O -0.444 6.444 27 O -0.312 6.312 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.117 0.883 31 H 0.249 0.751 32 H 0.263 0.737 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.140 0.860 43 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -25.103 10.066 3.107 27.224 hybrid contribution 1.435 -1.485 -0.075 2.066 sum -23.668 8.581 3.033 25.357 Atomic orbital electron populations 1.22649 0.72447 1.06896 1.05525 1.44014 1.08153 1.03363 1.52201 1.21975 0.86406 0.93712 1.08241 1.16907 0.87186 0.89402 1.11598 1.41821 1.01297 1.09466 1.77358 1.16162 0.81340 0.84940 0.78404 1.90877 1.85235 1.15567 1.58466 1.47674 1.05635 1.07131 1.75444 1.21941 1.01041 0.78003 1.00433 1.21910 0.94711 1.01631 0.98098 1.21513 0.96489 0.95364 1.00939 1.18920 0.93604 0.92843 0.92783 0.99866 1.21562 0.94225 0.92157 1.49285 0.91800 1.25936 1.01084 0.97391 0.94821 1.70131 1.33708 1.01756 1.49762 0.85513 0.80319 0.78483 0.77393 1.18119 1.21007 1.21038 1.21588 0.78275 1.00536 0.97573 1.21515 0.94975 0.95288 1.04753 1.19044 0.89980 0.85247 1.22958 1.19398 0.80729 0.87333 0.71623 1.90986 1.56650 1.47802 1.48991 1.84536 1.23203 1.37833 1.85605 0.88816 0.86025 0.88329 0.75116 0.73673 0.87723 0.89771 0.93340 0.87380 0.93047 0.92212 0.93336 0.94473 0.90940 0.85956 0.70374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.56 127.77 1.35 1.83 16 2 N -0.40 -7.44 3.17 -533.70 -1.69 -9.13 16 3 C 0.04 0.64 11.42 83.54 0.95 1.59 16 4 C 0.05 1.45 6.91 37.62 0.26 1.71 16 5 N -0.65 -19.48 5.38 -317.69 -1.71 -21.19 16 6 C 0.69 29.83 8.26 179.05 1.48 31.31 16 7 O -0.62 -34.61 12.96 -4.02 -0.05 -34.66 16 8 N -0.62 -25.43 2.97 -836.90 -2.49 -27.92 16 9 C 0.11 2.88 6.39 86.36 0.55 3.43 16 10 C -0.13 -3.55 6.08 30.67 0.19 -3.36 16 11 C -0.11 -4.04 5.11 30.62 0.16 -3.88 16 12 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 13 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 14 C -0.53 -30.07 8.56 25.60 0.22 -29.85 16 15 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 16 C 0.01 0.40 5.30 84.66 0.45 0.85 16 17 N -0.91 -58.23 11.40 21.45 0.24 -57.98 16 18 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 22 C 0.14 7.38 5.41 86.36 0.47 7.85 16 23 C -0.14 -5.19 9.44 22.68 0.21 -4.98 16 24 C -0.06 -1.79 6.88 40.32 0.28 -1.52 16 25 C 0.56 15.88 8.29 69.97 0.58 16.46 16 26 O -0.55 -21.05 17.67 19.40 0.34 -20.71 16 27 O -0.50 -7.64 10.85 -58.15 -0.63 -8.28 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.12 0.11 8.14 -2.39 -0.02 0.10 16 30 H 0.10 0.81 6.14 -2.38 -0.01 0.80 16 31 H 0.23 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.42 8.27 6.32 -92.71 -0.59 7.69 16 33 H 0.10 1.84 5.65 -2.39 -0.01 1.83 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 40 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 4.55 5.12 -2.39 -0.01 4.54 16 42 H 0.12 6.12 5.99 -2.91 -0.02 6.10 16 43 H 0.43 2.83 9.11 -74.06 -0.67 2.16 16 Total: -1.00 -94.21 351.83 2.97 -91.24 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.19 Total: 17.47 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 7.12 Total: 23.37 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -5.64 Total: -116.22 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: -0.34 Total: -63.65 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -94.21 2.97 -91.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600962959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.550 kcal (2) G-P(sol) polarization free energy of solvation -94.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds