Wall clock time and date at job start Tue Mar 31 2020 13:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35828 * 125.65523 * 2 1 4 4 C 1.35927 * 108.79675 * 179.97438 * 3 2 1 5 5 N 1.40788 * 126.11663 * 179.97438 * 4 3 2 6 6 C 1.34771 * 119.99919 * 180.02562 * 5 4 3 7 7 O 1.21603 * 120.00196 * 5.19701 * 6 5 4 8 8 N 1.34775 * 120.00146 * 185.19907 * 6 5 4 9 9 C 1.47210 * 120.81270 * 355.11466 * 8 6 5 10 10 C 1.53189 * 108.85647 * 126.33517 * 9 8 6 11 11 C 1.53046 * 109.30941 * 54.65175 * 10 9 8 12 12 C 1.53039 * 109.54004 * 298.63668 * 11 10 9 13 13 H 1.09000 * 109.49366 * 301.41379 * 12 11 10 14 14 C 1.50697 * 109.52417 * 181.33229 * 12 11 10 15 15 H 1.08004 * 119.99738 * 0.14382 * 14 12 11 16 16 C 1.37875 * 120.00076 * 180.14385 * 14 12 11 17 17 N 1.31508 * 119.99856 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99903 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47568 * 59.99833 * 18 16 14 20 20 H 1.48497 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47296 * 299.99761 * 18 16 14 22 22 C 1.46925 * 120.63777 * 174.97304 * 8 6 5 23 23 C 1.40145 * 107.76946 * 0.27107 * 4 3 2 24 24 C 1.37664 * 125.65063 * 180.02562 * 2 1 3 25 25 C 1.46459 * 126.18082 * 359.97438 * 24 2 1 26 26 O 1.21637 * 120.00008 * 179.97438 * 25 24 2 27 27 O 1.34904 * 120.00146 * 0.02562 * 25 24 2 28 28 H 1.09003 * 109.47194 * 89.96924 * 1 2 3 29 29 H 1.08995 * 109.47011 * 209.97659 * 1 2 3 30 30 H 1.09007 * 109.46535 * 329.97072 * 1 2 3 31 31 H 1.08003 * 125.60357 * 0.02562 * 3 2 1 32 32 H 0.97003 * 119.99794 * 0.02562 * 5 4 3 33 33 H 1.08999 * 109.53567 * 6.53382 * 9 8 6 34 34 H 1.09003 * 109.56022 * 246.16072 * 9 8 6 35 35 H 1.09002 * 109.49674 * 294.70628 * 10 9 8 36 36 H 1.08997 * 109.50015 * 174.60172 * 10 9 8 37 37 H 1.09007 * 109.45797 * 178.61117 * 11 10 9 38 38 H 1.09008 * 109.44545 * 58.65162 * 11 10 9 39 39 H 0.97001 * 119.99793 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.59055 * 113.81956 * 22 8 6 41 41 H 1.09008 * 109.58256 * 353.53933 * 22 8 6 42 42 H 1.08000 * 126.44605 * 179.74108 * 23 4 3 43 43 H 0.96703 * 117.00205 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2567 1.1037 0.0000 4 6 3.5576 0.7095 0.0006 5 7 4.6816 1.5572 0.0003 6 6 5.9224 1.0312 0.0004 7 8 6.0728 -0.1718 -0.0946 8 7 6.9966 1.8383 0.1058 9 6 6.8418 3.3022 0.1144 10 6 7.5397 3.8666 1.3558 11 6 8.9936 3.3894 1.3800 12 6 9.0296 1.8614 1.4583 13 1 8.5030 1.5306 2.3534 14 6 10.4611 1.3936 1.5150 15 1 11.2656 2.1140 1.4994 16 6 10.7436 0.0461 1.5868 17 7 9.7639 -0.8311 1.6054 18 14 12.5179 -0.5337 1.6579 19 1 13.1770 0.0356 2.8606 20 1 12.5516 -2.0166 1.7296 21 1 13.2358 -0.0812 0.4391 22 6 8.3487 1.2744 0.2180 23 6 3.5799 -0.6918 -0.0054 24 6 2.2673 -1.1186 -0.0005 25 6 1.8107 -2.5102 -0.0006 26 8 2.6219 -3.4165 -0.0015 27 8 0.4903 -2.7868 -0.0007 28 1 -0.3634 0.0006 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.9097 2.1264 0.0004 32 1 4.5629 2.5200 -0.0001 33 1 5.7823 3.5566 0.1435 34 1 7.2961 3.7224 -0.7830 35 1 7.0271 3.5167 2.2519 36 1 7.5148 4.9558 1.3236 37 1 9.4994 3.8097 2.2494 38 1 9.4987 3.7185 0.4718 39 1 9.9627 -1.7791 1.6563 40 1 8.9258 1.5293 -0.6708 41 1 8.2857 0.1905 0.3143 42 1 4.4587 -1.3195 -0.0104 43 1 0.2372 -3.7202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600962960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:24 Heat of formation + Delta-G solvation = -57.634323 kcal Electronic energy + Delta-G solvation = -27274.553959 eV Core-core repulsion = 23321.138633 eV Total energy + Delta-G solvation = -3953.415327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54707 -39.88163 -39.36932 -36.92072 -36.17574 -34.58037 -33.36503 -32.12302 -31.41296 -29.78180 -29.22817 -26.35912 -25.05042 -24.66020 -23.75407 -21.84437 -21.01847 -20.44752 -19.62735 -18.55591 -18.39350 -17.63662 -17.15040 -16.12809 -16.07564 -15.53749 -15.35832 -15.03904 -14.70137 -14.55045 -14.14497 -13.86033 -13.74863 -13.48403 -13.11398 -12.88459 -12.60619 -12.53410 -12.42977 -12.20065 -12.12841 -11.91145 -11.66191 -10.95898 -10.88692 -10.80739 -10.52884 -10.43355 -10.35496 -10.16668 -9.86038 -9.32280 -9.07380 -8.93510 -8.46805 -8.38159 -7.85678 -7.40018 -5.93999 -4.03441 1.18902 2.54959 2.58315 2.85496 3.18713 3.28986 3.37190 3.42624 3.43608 3.97244 4.32737 4.48567 4.62469 4.76713 4.95383 5.06915 5.23340 5.30338 5.35589 5.41907 5.48470 5.62072 5.86531 5.94551 6.02578 6.15491 6.31526 6.32128 6.49821 6.60961 6.66909 6.74416 6.85321 6.99839 7.05172 7.09785 7.27362 7.35727 7.49804 7.77265 7.83000 7.95576 8.09533 8.44270 8.53039 8.99673 9.20649 9.62175 11.11029 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.003288 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.839695 B = 8513.646565 C =10040.800080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.422 5.422 3 C -0.016 4.016 4 C 0.091 3.909 5 N -0.672 5.672 6 C 0.701 3.299 7 O -0.564 6.564 8 N -0.619 5.619 9 C 0.114 3.886 10 C -0.134 4.134 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.878 5.878 18 Si 0.892 3.108 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.128 3.872 23 C -0.086 4.086 24 C -0.046 4.046 25 C 0.555 3.445 26 O -0.499 6.499 27 O -0.524 6.524 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.400 0.600 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.265 0.735 40 H 0.041 0.959 41 H 0.124 0.876 42 H 0.180 0.820 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.253 6.935 -3.855 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.099 5.099 3 C -0.153 4.153 4 C -0.011 4.011 5 N -0.322 5.322 6 C 0.403 3.597 7 O -0.440 6.440 8 N -0.355 5.355 9 C -0.010 4.010 10 C -0.172 4.172 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.515 5.515 18 Si 0.720 3.280 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.203 1.203 22 C 0.008 3.992 23 C -0.115 4.115 24 C -0.156 4.156 25 C 0.399 3.601 26 O -0.386 6.386 27 O -0.337 6.337 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.189 0.811 32 H 0.237 0.763 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.142 0.858 42 H 0.197 0.803 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -21.125 5.971 -3.908 22.298 hybrid contribution 0.638 -0.211 0.057 0.675 sum -20.487 5.760 -3.851 21.627 Atomic orbital electron populations 1.22187 0.75982 1.04881 1.03614 1.43608 1.06319 1.04667 1.55327 1.21214 0.88655 0.91738 1.13669 1.16651 0.85617 0.90483 1.08333 1.42302 1.03058 1.08478 1.78408 1.15857 0.79751 0.85538 0.78524 1.90865 1.84158 1.12677 1.56319 1.47873 1.07476 1.04768 1.75410 1.21583 0.98790 0.81725 0.98889 1.21950 0.98796 0.98924 0.97520 1.21623 0.92953 0.99654 1.00569 1.18979 0.95924 0.88881 0.94119 0.95327 1.21017 0.91371 0.91790 1.52045 0.92448 1.25051 0.97093 0.96996 0.94833 1.69868 1.30878 1.01932 1.48790 0.86662 0.85216 0.77619 0.78508 1.20356 1.21250 1.20274 1.22242 0.75716 1.03162 0.98084 1.21885 0.94940 0.93701 1.00974 1.19242 0.90339 0.83771 1.22237 1.19447 0.79787 0.87998 0.72835 1.91006 1.54894 1.46403 1.46345 1.84601 1.26592 1.35755 1.86790 0.90774 0.88395 0.89854 0.81100 0.76260 0.92259 0.91838 0.92113 0.92261 0.93032 0.93154 0.92506 0.94097 0.85806 0.80269 0.72924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.56 59.85 0.63 1.12 16 2 N -0.42 -4.67 3.17 -120.04 -0.38 -5.06 16 3 C -0.02 -0.17 11.41 -16.61 -0.19 -0.36 16 4 C 0.09 1.39 6.91 -83.85 -0.58 0.81 16 5 N -0.67 -10.47 5.39 -14.39 -0.08 -10.55 16 6 C 0.70 14.47 8.27 -86.92 -0.72 13.75 16 7 O -0.56 -14.12 12.97 5.27 0.07 -14.05 16 8 N -0.62 -12.36 2.98 -178.27 -0.53 -12.89 16 9 C 0.11 1.69 6.44 -3.56 -0.02 1.67 16 10 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 11 C -0.11 -2.15 5.11 -26.69 -0.14 -2.29 16 12 C 0.04 0.99 2.25 -91.66 -0.21 0.78 16 13 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 14 C -0.52 -14.21 8.56 -34.44 -0.29 -14.51 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -25.93 11.39 55.43 0.63 -25.30 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.13 3.12 5.38 -3.71 -0.02 3.10 16 23 C -0.09 -1.54 9.44 -38.95 -0.37 -1.91 16 24 C -0.05 -0.68 6.88 -82.02 -0.56 -1.24 16 25 C 0.55 7.69 8.29 34.04 0.28 7.97 16 26 O -0.50 -8.83 17.67 -19.37 -0.34 -9.17 16 27 O -0.52 -4.55 10.85 -41.05 -0.45 -4.99 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.63 6.14 -51.93 -0.32 0.31 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.40 4.69 6.30 -40.82 -0.26 4.43 16 33 H 0.06 0.66 5.59 -51.93 -0.29 0.37 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.12 3.55 5.14 -51.92 -0.27 3.29 16 42 H 0.18 3.90 5.99 -52.49 -0.31 3.59 16 43 H 0.41 1.76 9.11 45.56 0.42 2.18 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -36.18 351.83 -8.04 -44.22 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.80 Total: 7.67 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -2.44 Total: 8.35 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.36 Total: -53.80 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.72 Total: -28.22 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.18 -8.04 -44.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600962960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.413 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds