Wall clock time and date at job start Tue Mar 31 2020 13:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35828 * 125.65523 * 2 1 4 4 C 1.35927 * 108.79675 * 179.97438 * 3 2 1 5 5 N 1.40788 * 126.11663 * 179.97438 * 4 3 2 6 6 C 1.34771 * 119.99919 * 180.02562 * 5 4 3 7 7 O 1.21603 * 120.00196 * 5.19701 * 6 5 4 8 8 N 1.34775 * 120.00146 * 185.19907 * 6 5 4 9 9 C 1.47210 * 120.81270 * 355.11466 * 8 6 5 10 10 C 1.53189 * 108.85647 * 126.33517 * 9 8 6 11 11 C 1.53046 * 109.30941 * 54.65175 * 10 9 8 12 12 C 1.53039 * 109.54004 * 298.63668 * 11 10 9 13 13 H 1.09000 * 109.49366 * 301.41379 * 12 11 10 14 14 C 1.50697 * 109.52417 * 181.33229 * 12 11 10 15 15 H 1.08004 * 119.99738 * 0.14382 * 14 12 11 16 16 C 1.37875 * 120.00076 * 180.14385 * 14 12 11 17 17 N 1.31508 * 119.99856 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99903 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47568 * 59.99833 * 18 16 14 20 20 H 1.48497 * 109.46945 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47296 * 299.99761 * 18 16 14 22 22 C 1.46925 * 120.63777 * 174.97304 * 8 6 5 23 23 C 1.40145 * 107.76946 * 0.27107 * 4 3 2 24 24 C 1.37664 * 125.65063 * 180.02562 * 2 1 3 25 25 C 1.46459 * 126.18082 * 359.97438 * 24 2 1 26 26 O 1.21637 * 120.00008 * 179.97438 * 25 24 2 27 27 O 1.34904 * 120.00146 * 0.02562 * 25 24 2 28 28 H 1.09003 * 109.47194 * 89.96924 * 1 2 3 29 29 H 1.08995 * 109.47011 * 209.97659 * 1 2 3 30 30 H 1.09007 * 109.46535 * 329.97072 * 1 2 3 31 31 H 1.08003 * 125.60357 * 0.02562 * 3 2 1 32 32 H 0.97003 * 119.99794 * 0.02562 * 5 4 3 33 33 H 1.08999 * 109.53567 * 6.53382 * 9 8 6 34 34 H 1.09003 * 109.56022 * 246.16072 * 9 8 6 35 35 H 1.09002 * 109.49674 * 294.70628 * 10 9 8 36 36 H 1.08997 * 109.50015 * 174.60172 * 10 9 8 37 37 H 1.09007 * 109.45797 * 178.61117 * 11 10 9 38 38 H 1.09008 * 109.44545 * 58.65162 * 11 10 9 39 39 H 0.97001 * 119.99793 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.59055 * 113.81956 * 22 8 6 41 41 H 1.09008 * 109.58256 * 353.53933 * 22 8 6 42 42 H 1.08000 * 126.44605 * 179.74108 * 23 4 3 43 43 H 0.96703 * 117.00205 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2567 1.1037 0.0000 4 6 3.5576 0.7095 0.0006 5 7 4.6816 1.5572 0.0003 6 6 5.9224 1.0312 0.0004 7 8 6.0728 -0.1718 -0.0946 8 7 6.9966 1.8383 0.1058 9 6 6.8418 3.3022 0.1144 10 6 7.5397 3.8666 1.3558 11 6 8.9936 3.3894 1.3800 12 6 9.0296 1.8614 1.4583 13 1 8.5030 1.5306 2.3534 14 6 10.4611 1.3936 1.5150 15 1 11.2656 2.1140 1.4994 16 6 10.7436 0.0461 1.5868 17 7 9.7639 -0.8311 1.6054 18 14 12.5179 -0.5337 1.6579 19 1 13.1770 0.0356 2.8606 20 1 12.5516 -2.0166 1.7296 21 1 13.2358 -0.0812 0.4391 22 6 8.3487 1.2744 0.2180 23 6 3.5799 -0.6918 -0.0054 24 6 2.2673 -1.1186 -0.0005 25 6 1.8107 -2.5102 -0.0006 26 8 2.6219 -3.4165 -0.0015 27 8 0.4903 -2.7868 -0.0007 28 1 -0.3634 0.0006 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.9097 2.1264 0.0004 32 1 4.5629 2.5200 -0.0001 33 1 5.7823 3.5566 0.1435 34 1 7.2961 3.7224 -0.7830 35 1 7.0271 3.5167 2.2519 36 1 7.5148 4.9558 1.3236 37 1 9.4994 3.8097 2.2494 38 1 9.4987 3.7185 0.4718 39 1 9.9627 -1.7791 1.6563 40 1 8.9258 1.5293 -0.6708 41 1 8.2857 0.1905 0.3143 42 1 4.4587 -1.3195 -0.0104 43 1 0.2372 -3.7202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600962960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:24 Heat of formation + Delta-G solvation = -84.722073 kcal Electronic energy + Delta-G solvation = -27275.728572 eV Core-core repulsion = 23321.138633 eV Total energy + Delta-G solvation = -3954.589940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.61935 -41.24805 -40.55704 -38.50290 -37.17061 -35.98986 -35.18855 -33.61801 -32.64167 -31.48331 -30.36259 -27.35751 -26.90916 -26.08756 -24.91252 -23.44710 -22.34321 -21.52139 -21.09242 -20.01055 -19.53261 -18.86150 -18.48335 -18.00240 -17.08496 -16.88001 -16.54197 -16.37784 -16.33425 -15.72221 -15.51758 -15.19490 -15.15719 -14.69608 -14.49635 -14.37911 -14.10333 -14.00543 -13.53375 -13.38108 -13.31045 -12.99366 -12.83978 -12.69194 -12.65626 -12.26449 -12.23341 -11.98382 -11.81324 -11.63624 -11.58248 -11.09251 -10.92483 -10.78355 -10.49489 -9.59725 -9.42129 -8.58612 -8.08401 -6.26292 0.11259 1.40756 1.42428 1.45659 1.51459 1.52898 1.79978 1.99382 2.15865 2.43192 2.49957 3.05238 3.21299 3.85609 4.06388 4.12277 4.16619 4.20254 4.30672 4.44393 4.56289 4.63576 4.71296 4.77874 4.81923 4.85037 4.91363 5.02579 5.14009 5.24417 5.30218 5.32112 5.35702 5.45068 5.57433 5.67043 5.70360 5.92635 5.93247 6.00808 6.21569 6.25906 6.37572 6.87378 6.91157 7.13162 7.44029 7.68598 8.94130 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.003288 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.839695 B = 8513.646565 C =10040.800080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.402 5.402 3 C 0.036 3.964 4 C 0.049 3.951 5 N -0.648 5.648 6 C 0.691 3.309 7 O -0.623 6.623 8 N -0.623 5.623 9 C 0.108 3.892 10 C -0.125 4.125 11 C -0.106 4.106 12 C 0.039 3.961 13 H -0.016 1.016 14 C -0.536 4.536 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.915 5.915 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.292 1.292 21 H -0.266 1.266 22 C 0.143 3.857 23 C -0.136 4.136 24 C -0.061 4.061 25 C 0.563 3.437 26 O -0.553 6.553 27 O -0.497 6.497 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.233 0.767 32 H 0.422 0.578 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.258 0.742 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.122 0.878 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.404 11.043 -4.267 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.077 5.077 3 C -0.103 4.103 4 C -0.051 4.051 5 N -0.300 5.300 6 C 0.393 3.607 7 O -0.503 6.503 8 N -0.359 5.359 9 C -0.014 4.014 10 C -0.163 4.163 11 C -0.143 4.143 12 C 0.020 3.980 13 H 0.002 0.998 14 C -0.575 4.575 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.554 5.554 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.218 1.218 21 H -0.191 1.191 22 C 0.020 3.980 23 C -0.165 4.165 24 C -0.172 4.172 25 C 0.409 3.591 26 O -0.444 6.444 27 O -0.312 6.312 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.140 0.860 31 H 0.249 0.751 32 H 0.263 0.737 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.140 0.860 43 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -24.382 10.152 -4.321 26.762 hybrid contribution 1.428 -1.471 0.187 2.059 sum -22.954 8.681 -4.134 24.886 Atomic orbital electron populations 1.22649 0.72440 1.06897 1.05527 1.44014 1.08154 1.03357 1.52206 1.21976 0.86402 0.93715 1.08242 1.16910 0.87195 0.89401 1.11596 1.41807 1.01316 1.09461 1.77374 1.16139 0.81310 0.84868 0.78396 1.90864 1.85274 1.15527 1.58611 1.47739 1.05665 1.07182 1.75339 1.21998 1.01986 0.77942 0.99486 1.21910 0.95339 1.01716 0.97342 1.21516 0.96515 0.95340 1.00967 1.18907 0.94094 0.92879 0.92138 0.99756 1.21511 0.93014 0.92029 1.50934 0.91791 1.25926 1.01160 0.97365 0.94684 1.70102 1.33132 1.01711 1.50435 0.85621 0.80291 0.76672 0.79158 1.19141 1.21783 1.19075 1.21587 0.78336 1.00472 0.97557 1.21517 0.94977 0.95294 1.04738 1.19045 0.89977 0.85253 1.22972 1.19395 0.80732 0.87330 0.71622 1.90987 1.56652 1.47803 1.48993 1.84536 1.23192 1.37831 1.85611 0.88793 0.88342 0.86024 0.75108 0.73674 0.87666 0.89898 0.93131 0.87376 0.92979 0.92314 0.93309 0.94726 0.90981 0.85976 0.70373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.56 127.77 1.35 1.84 16 2 N -0.40 -7.55 3.17 -533.71 -1.69 -9.24 16 3 C 0.04 0.65 11.41 83.54 0.95 1.60 16 4 C 0.05 1.46 6.91 37.63 0.26 1.72 16 5 N -0.65 -19.66 5.39 -317.69 -1.71 -21.37 16 6 C 0.69 29.96 8.27 179.06 1.48 31.44 16 7 O -0.62 -34.57 12.97 -4.04 -0.05 -34.62 16 8 N -0.62 -25.50 2.98 -836.17 -2.50 -28.00 16 9 C 0.11 2.88 6.44 86.31 0.56 3.44 16 10 C -0.13 -3.49 6.08 30.67 0.19 -3.31 16 11 C -0.11 -4.03 5.11 30.62 0.16 -3.88 16 12 C 0.04 2.02 2.25 -11.47 -0.03 1.99 16 13 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 14 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.01 0.47 5.30 84.66 0.45 0.92 16 17 N -0.92 -58.14 11.39 21.45 0.24 -57.90 16 18 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.14 7.41 5.38 86.36 0.46 7.88 16 23 C -0.14 -5.24 9.44 22.68 0.21 -5.02 16 24 C -0.06 -1.82 6.88 40.32 0.28 -1.54 16 25 C 0.56 16.04 8.29 69.96 0.58 16.62 16 26 O -0.55 -21.22 17.67 19.39 0.34 -20.88 16 27 O -0.50 -7.76 10.85 -58.19 -0.63 -8.39 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.10 0.83 6.14 -2.39 -0.01 0.82 16 30 H 0.12 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.42 8.37 6.30 -92.71 -0.58 7.79 16 33 H 0.11 1.84 5.59 -2.39 -0.01 1.83 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.26 15.97 8.31 -92.71 -0.77 15.19 16 40 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 4.53 5.14 -2.38 -0.01 4.52 16 42 H 0.12 6.16 5.99 -2.91 -0.02 6.14 16 43 H 0.43 2.93 9.11 -74.05 -0.67 2.25 16 Total: -1.00 -93.91 351.83 2.96 -90.95 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.19 Total: 18.01 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 7.12 Total: 23.74 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -5.65 Total: -116.51 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -0.34 Total: -63.89 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -93.91 2.96 -90.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600962960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.226 kcal (2) G-P(sol) polarization free energy of solvation -93.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds