Wall clock time and date at job start Tue Mar 31 2020 13:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35194 * 126.00248 * 2 1 4 4 C 1.34569 * 107.61757 * 180.02562 * 3 2 1 5 5 C 1.40491 * 108.04160 * 359.92539 * 4 3 2 6 6 N 1.30129 * 108.22200 * 0.10078 * 5 4 3 7 7 C 1.50944 * 123.48851 * 180.27578 * 5 4 3 8 8 C 1.53368 * 108.20592 * 16.58277 * 7 5 4 9 9 C 1.53019 * 109.75259 * 309.36066 * 8 7 5 10 10 C 1.50888 * 128.32700 * 179.83926 * 4 3 2 11 11 H 1.08994 * 109.72232 * 76.94645 * 10 4 3 12 12 C 1.50710 * 109.71616 * 316.29906 * 10 4 3 13 13 O 1.21290 * 119.99850 * 325.33333 * 12 10 4 14 14 N 1.34777 * 119.99955 * 145.33682 * 12 10 4 15 15 C 1.37099 * 119.99719 * 4.22256 * 14 12 10 16 16 H 1.07998 * 119.99970 * 315.37887 * 15 14 12 17 17 C 1.38949 * 119.99624 * 135.37624 * 15 14 12 18 18 N 1.31410 * 120.00197 * 1.99436 * 17 15 14 19 19 Si 1.86802 * 119.99763 * 181.99212 * 17 15 14 20 20 H 1.48494 * 109.47595 * 60.00146 * 19 17 15 21 21 H 1.48504 * 109.46921 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47162 * 299.99855 * 19 17 15 23 23 C 1.46493 * 120.00007 * 184.22314 * 14 12 10 24 24 C 1.53002 * 109.47026 * 84.12093 * 23 14 12 25 25 C 1.50705 * 109.46919 * 180.02562 * 24 23 14 26 26 O 1.20828 * 119.99984 * 359.97438 * 25 24 23 27 27 O 1.34227 * 119.99602 * 179.97438 * 25 24 23 28 28 H 1.08994 * 109.46915 * 269.99360 * 1 2 3 29 29 H 1.08999 * 109.46959 * 29.99657 * 1 2 3 30 30 H 1.09000 * 109.46753 * 149.99321 * 1 2 3 31 31 H 1.08002 * 126.19256 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.71412 * 136.25617 * 7 5 4 33 33 H 1.08999 * 109.71397 * 256.89924 * 7 5 4 34 34 H 1.09003 * 109.42359 * 189.27341 * 8 7 5 35 35 H 1.09004 * 109.37910 * 69.42425 * 8 7 5 36 36 H 1.09000 * 109.43120 * 311.66232 * 9 8 7 37 37 H 1.08994 * 109.43399 * 191.80712 * 9 8 7 38 38 H 0.97009 * 119.99790 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47247 * 204.11667 * 23 14 12 40 40 H 1.08996 * 109.47360 * 324.11838 * 23 14 12 41 41 H 1.09001 * 109.46760 * 299.99873 * 24 23 14 42 42 H 1.08996 * 109.47245 * 60.00241 * 24 23 14 43 43 H 0.96704 * 116.99926 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5367 0.6693 -0.0006 5 6 3.5283 -0.7356 0.0008 6 7 2.2899 -1.1351 0.0000 7 6 4.7822 -1.5760 0.0067 8 6 5.9559 -0.6825 0.4264 9 6 5.9642 0.5920 -0.4204 10 6 4.7980 1.4974 -0.0041 11 1 4.9796 1.8954 0.9942 12 6 4.6589 2.6315 -0.9869 13 8 4.0332 2.4710 -2.0135 14 7 5.2298 3.8240 -0.7250 15 6 6.0090 3.9803 0.3921 16 1 5.6786 3.5837 1.3407 17 6 7.2238 4.6491 0.3038 18 7 7.6076 5.1657 -0.8419 19 14 8.3112 4.8136 1.8137 20 1 8.6805 3.4628 2.3075 21 1 9.5420 5.5646 1.4577 22 1 7.5755 5.5451 2.8763 23 6 5.0177 4.9530 -1.6341 24 6 3.7015 5.6498 -1.2835 25 6 3.4830 6.8108 -2.2192 26 8 4.2969 7.0561 -3.0779 27 8 2.3843 7.5724 -2.0984 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.9295 2.1220 0.0004 32 1 4.6720 -2.3958 0.7166 33 1 4.9621 -1.9749 -0.9916 34 1 6.8921 -1.2212 0.2797 35 1 5.8510 -0.4180 1.4786 36 1 5.8608 0.3287 -1.4731 37 1 6.9053 1.1210 -0.2704 38 1 8.4555 5.6329 -0.9035 39 1 5.8411 5.6601 -1.5335 40 1 4.9743 4.5896 -2.6608 41 1 2.8781 4.9426 -1.3841 42 1 3.7449 6.0132 -0.2569 43 1 2.2881 8.3060 -2.7211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600970439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:14 Heat of formation + Delta-G solvation = -52.890326 kcal Electronic energy + Delta-G solvation = -28060.241841 eV Core-core repulsion = 24107.032229 eV Total energy + Delta-G solvation = -3953.209612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12455 -39.79209 -38.60324 -36.13181 -35.71961 -34.85221 -32.42540 -31.94161 -31.44835 -30.35873 -28.14073 -26.84062 -25.22003 -24.35116 -22.74134 -21.45969 -20.88227 -20.14560 -19.09389 -18.41708 -17.73875 -16.87797 -16.27655 -16.04239 -15.82365 -15.46127 -15.16541 -14.56263 -14.49435 -14.21343 -14.02301 -13.73160 -13.17522 -12.99588 -12.71900 -12.60371 -12.48697 -12.39126 -12.28383 -11.95576 -11.78182 -11.34499 -11.21105 -11.12329 -11.09722 -10.78896 -10.77289 -10.54334 -10.38590 -10.26893 -10.09008 -10.05884 -9.78864 -9.06525 -8.84927 -8.46509 -7.81731 -7.49684 -6.31239 -4.22663 2.27815 2.69903 2.79888 3.11983 3.17554 3.20092 3.20333 3.44775 3.86795 4.11804 4.62438 4.83749 4.94574 5.11295 5.14982 5.21783 5.36535 5.39780 5.43600 5.63919 5.67127 5.82028 5.83949 5.92008 5.99296 6.01769 6.10759 6.17080 6.30500 6.37983 6.41428 6.50946 6.64752 6.79099 6.84272 6.87796 6.98170 7.10202 7.32560 7.39347 7.61188 7.97809 8.09022 8.32498 8.36268 9.05055 9.47531 9.89683 10.65459 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.005431 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.746347 B = 5154.139703 C = 7251.616806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.391 5.391 3 C 0.072 3.928 4 C -0.201 4.201 5 C 0.082 3.918 6 N -0.303 5.303 7 C -0.035 4.035 8 C -0.112 4.112 9 C -0.099 4.099 10 C -0.014 4.014 11 H 0.097 0.903 12 C 0.488 3.512 13 O -0.593 6.593 14 N -0.443 5.443 15 C -0.342 4.342 16 H 0.090 0.910 17 C 0.047 3.953 18 N -0.865 5.865 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.119 3.881 24 C -0.124 4.124 25 C 0.482 3.518 26 O -0.512 6.512 27 O -0.527 6.527 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.166 0.834 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.272 0.728 39 H 0.132 0.868 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.935 -4.425 4.396 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.175 5.175 3 C -0.072 4.072 4 C -0.212 4.212 5 C -0.086 4.086 6 N -0.125 5.125 7 C -0.075 4.075 8 C -0.150 4.150 9 C -0.137 4.137 10 C -0.036 4.036 11 H 0.115 0.885 12 C 0.276 3.724 13 O -0.477 6.477 14 N -0.161 5.161 15 C -0.470 4.470 16 H 0.107 0.893 17 C -0.159 4.159 18 N -0.502 5.502 19 Si 0.743 3.257 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.199 1.199 23 C -0.004 4.004 24 C -0.163 4.163 25 C 0.324 3.676 26 O -0.399 6.399 27 O -0.338 6.338 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.184 0.816 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.149 0.851 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.749 -5.612 3.838 11.080 hybrid contribution 0.787 1.616 0.286 1.820 sum -7.962 -3.997 4.124 9.817 Atomic orbital electron populations 1.21697 0.74938 1.03991 1.02601 1.48317 1.05943 1.03529 1.59677 1.21860 0.90821 0.92821 1.01652 1.19745 0.94107 0.93211 1.14153 1.22255 0.93125 0.93881 0.99344 1.76881 1.01262 1.08224 1.26088 1.20110 0.88890 0.96199 1.02264 1.21565 0.96913 0.96078 1.00480 1.21359 0.98150 0.94554 0.99676 1.19520 0.91178 0.92789 1.00130 0.88517 1.20473 0.81634 0.83510 0.86761 1.90539 1.46377 1.82996 1.27834 1.43375 1.43604 1.06319 1.22850 1.19352 0.99275 1.40083 0.88242 0.89285 1.25531 0.96868 0.96165 0.97314 1.69632 1.21853 1.34318 1.24398 0.86173 0.79500 0.78804 0.81271 1.19469 1.20889 1.19872 1.21445 0.94653 0.91163 0.93188 1.21910 1.03152 0.92764 0.98491 1.23827 0.77496 0.82652 0.83618 1.90706 1.44485 1.69814 1.34912 1.84592 1.45128 1.43976 1.60143 0.91428 0.89869 0.89856 0.81647 0.90576 0.90198 0.91193 0.91477 0.91893 0.90288 0.91729 0.85071 0.92321 0.89032 0.88016 0.74229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.16 11.47 59.85 0.69 1.85 16 2 N -0.39 -6.27 4.02 -68.29 -0.27 -6.55 16 3 C 0.07 1.25 10.69 -17.37 -0.19 1.07 16 4 C -0.20 -3.75 5.05 -104.98 -0.53 -4.28 16 5 C 0.08 1.44 7.10 -82.35 -0.58 0.85 16 6 N -0.30 -5.38 12.56 33.75 0.42 -4.96 16 7 C -0.04 -0.50 6.31 -27.57 -0.17 -0.68 16 8 C -0.11 -1.57 5.86 -26.53 -0.16 -1.72 16 9 C -0.10 -1.77 5.17 -26.52 -0.14 -1.90 16 10 C -0.01 -0.27 2.35 -92.63 -0.22 -0.49 16 11 H 0.10 1.85 6.20 -51.93 -0.32 1.53 16 12 C 0.49 11.18 6.33 -10.98 -0.07 11.11 16 13 O -0.59 -15.10 15.80 5.55 0.09 -15.02 16 14 N -0.44 -10.42 2.54 -114.81 -0.29 -10.72 16 15 C -0.34 -7.96 8.49 -14.93 -0.13 -8.09 16 16 H 0.09 1.95 6.50 -52.49 -0.34 1.61 16 17 C 0.05 1.12 5.35 -17.47 -0.09 1.03 16 18 N -0.87 -22.17 10.80 55.50 0.60 -21.57 16 19 Si 0.92 18.47 29.55 -169.99 -5.02 13.45 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C 0.12 2.81 4.18 -4.04 -0.02 2.79 16 24 C -0.12 -2.40 6.09 -27.88 -0.17 -2.57 16 25 C 0.48 8.84 8.33 36.01 0.30 9.14 16 26 O -0.51 -11.01 16.74 -18.75 -0.31 -11.32 16 27 O -0.53 -7.48 13.42 -39.25 -0.53 -8.00 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.17 2.65 8.06 -52.49 -0.42 2.22 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.13 3.39 5.23 -51.93 -0.27 3.12 16 40 H 0.06 1.51 7.50 -51.93 -0.39 1.12 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 43 H 0.40 3.77 9.10 45.56 0.41 4.19 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -32.45 359.89 -6.48 -38.94 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.11 Total: 12.22 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -1.47 Total: 8.11 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.46 Total: -43.79 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.75 Total: -34.34 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.45 -6.48 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600970439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.953 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds