Wall clock time and date at job start Tue Mar 31 2020 13:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35194 * 126.00248 * 2 1 4 4 C 1.34569 * 107.61757 * 180.02562 * 3 2 1 5 5 C 1.40491 * 108.04160 * 359.92539 * 4 3 2 6 6 N 1.30129 * 108.22200 * 0.10078 * 5 4 3 7 7 C 1.50944 * 123.48851 * 180.27578 * 5 4 3 8 8 C 1.53368 * 108.20592 * 16.58277 * 7 5 4 9 9 C 1.53019 * 109.75259 * 309.36066 * 8 7 5 10 10 C 1.50888 * 128.32700 * 179.83926 * 4 3 2 11 11 H 1.08994 * 109.72232 * 76.94645 * 10 4 3 12 12 C 1.50710 * 109.71616 * 316.29906 * 10 4 3 13 13 O 1.21290 * 119.99850 * 325.33333 * 12 10 4 14 14 N 1.34777 * 119.99955 * 145.33682 * 12 10 4 15 15 C 1.37099 * 119.99719 * 4.22256 * 14 12 10 16 16 H 1.07998 * 119.99970 * 315.37887 * 15 14 12 17 17 C 1.38949 * 119.99624 * 135.37624 * 15 14 12 18 18 N 1.31410 * 120.00197 * 1.99436 * 17 15 14 19 19 Si 1.86802 * 119.99763 * 181.99212 * 17 15 14 20 20 H 1.48494 * 109.47595 * 60.00146 * 19 17 15 21 21 H 1.48504 * 109.46921 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47162 * 299.99855 * 19 17 15 23 23 C 1.46493 * 120.00007 * 184.22314 * 14 12 10 24 24 C 1.53002 * 109.47026 * 84.12093 * 23 14 12 25 25 C 1.50705 * 109.46919 * 180.02562 * 24 23 14 26 26 O 1.20828 * 119.99984 * 359.97438 * 25 24 23 27 27 O 1.34227 * 119.99602 * 179.97438 * 25 24 23 28 28 H 1.08994 * 109.46915 * 269.99360 * 1 2 3 29 29 H 1.08999 * 109.46959 * 29.99657 * 1 2 3 30 30 H 1.09000 * 109.46753 * 149.99321 * 1 2 3 31 31 H 1.08002 * 126.19256 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.71412 * 136.25617 * 7 5 4 33 33 H 1.08999 * 109.71397 * 256.89924 * 7 5 4 34 34 H 1.09003 * 109.42359 * 189.27341 * 8 7 5 35 35 H 1.09004 * 109.37910 * 69.42425 * 8 7 5 36 36 H 1.09000 * 109.43120 * 311.66232 * 9 8 7 37 37 H 1.08994 * 109.43399 * 191.80712 * 9 8 7 38 38 H 0.97009 * 119.99790 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47247 * 204.11667 * 23 14 12 40 40 H 1.08996 * 109.47360 * 324.11838 * 23 14 12 41 41 H 1.09001 * 109.46760 * 299.99873 * 24 23 14 42 42 H 1.08996 * 109.47245 * 60.00241 * 24 23 14 43 43 H 0.96704 * 116.99926 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5367 0.6693 -0.0006 5 6 3.5283 -0.7356 0.0008 6 7 2.2899 -1.1351 0.0000 7 6 4.7822 -1.5760 0.0067 8 6 5.9559 -0.6825 0.4264 9 6 5.9642 0.5920 -0.4204 10 6 4.7980 1.4974 -0.0041 11 1 4.9796 1.8954 0.9942 12 6 4.6589 2.6315 -0.9869 13 8 4.0332 2.4710 -2.0135 14 7 5.2298 3.8240 -0.7250 15 6 6.0090 3.9803 0.3921 16 1 5.6786 3.5837 1.3407 17 6 7.2238 4.6491 0.3038 18 7 7.6076 5.1657 -0.8419 19 14 8.3112 4.8136 1.8137 20 1 8.6805 3.4628 2.3075 21 1 9.5420 5.5646 1.4577 22 1 7.5755 5.5451 2.8763 23 6 5.0177 4.9530 -1.6341 24 6 3.7015 5.6498 -1.2835 25 6 3.4830 6.8108 -2.2192 26 8 4.2969 7.0561 -3.0779 27 8 2.3843 7.5724 -2.0984 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.9295 2.1220 0.0004 32 1 4.6720 -2.3958 0.7166 33 1 4.9621 -1.9749 -0.9916 34 1 6.8921 -1.2212 0.2797 35 1 5.8510 -0.4180 1.4786 36 1 5.8608 0.3287 -1.4731 37 1 6.9053 1.1210 -0.2704 38 1 8.4555 5.6329 -0.9035 39 1 5.8411 5.6601 -1.5335 40 1 4.9743 4.5896 -2.6608 41 1 2.8781 4.9426 -1.3841 42 1 3.7449 6.0132 -0.2569 43 1 2.2881 8.3060 -2.7211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600970439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:13 Heat of formation + Delta-G solvation = -73.896169 kcal Electronic energy + Delta-G solvation = -28061.152722 eV Core-core repulsion = 24107.032229 eV Total energy + Delta-G solvation = -3954.120493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43271 -41.29466 -40.31844 -37.48479 -37.10957 -36.65762 -33.80117 -33.61848 -32.79664 -31.96954 -29.48215 -27.97346 -27.03340 -25.93736 -24.11554 -22.74172 -22.28294 -21.61782 -20.87007 -19.71349 -19.20171 -18.48485 -17.89773 -17.50868 -17.33806 -16.96390 -16.41859 -16.09369 -15.95110 -15.60914 -15.41902 -15.34315 -14.61200 -14.34882 -14.27939 -14.02481 -13.73498 -13.65012 -13.51042 -13.44025 -13.17403 -12.89891 -12.76207 -12.73860 -12.55294 -12.37987 -12.11187 -12.05284 -11.87404 -11.83414 -11.63905 -11.57397 -11.18943 -10.86869 -10.25354 -10.09589 -9.41519 -9.11627 -8.14163 -6.11329 0.98855 1.20864 1.53590 1.54499 1.63522 1.68582 1.83500 1.99297 2.15938 2.43254 3.13259 3.17650 3.47836 3.89590 4.03091 4.09908 4.14535 4.20236 4.22069 4.35046 4.45609 4.49391 4.50900 4.66663 4.67286 4.69396 4.76798 4.80435 4.82595 5.02585 5.05926 5.14379 5.25572 5.31456 5.41974 5.45027 5.52495 5.57434 5.70368 5.81917 6.14702 6.19487 6.49329 6.80276 7.01532 7.20307 7.65199 8.07195 8.82967 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.005431 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.746347 B = 5154.139703 C = 7251.616806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.389 5.389 3 C 0.067 3.933 4 C -0.230 4.230 5 C 0.072 3.928 6 N -0.321 5.321 7 C -0.034 4.034 8 C -0.101 4.101 9 C -0.097 4.097 10 C -0.005 4.005 11 H 0.099 0.901 12 C 0.482 3.518 13 O -0.626 6.626 14 N -0.451 5.451 15 C -0.345 4.345 16 H 0.106 0.894 17 C 0.003 3.997 18 N -0.904 5.904 19 Si 0.982 3.018 20 H -0.258 1.258 21 H -0.292 1.292 22 H -0.263 1.263 23 C 0.124 3.876 24 C -0.115 4.115 25 C 0.493 3.507 26 O -0.550 6.550 27 O -0.508 6.508 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.174 0.826 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.269 0.731 39 H 0.110 0.890 40 H 0.022 0.978 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.916 -5.190 6.530 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.172 5.172 3 C -0.078 4.078 4 C -0.242 4.242 5 C -0.095 4.095 6 N -0.143 5.143 7 C -0.073 4.073 8 C -0.139 4.139 9 C -0.135 4.135 10 C -0.028 4.028 11 H 0.117 0.883 12 C 0.272 3.728 13 O -0.513 6.513 14 N -0.170 5.170 15 C -0.472 4.472 16 H 0.123 0.877 17 C -0.198 4.198 18 N -0.542 5.542 19 Si 0.805 3.195 20 H -0.182 1.182 21 H -0.218 1.218 22 H -0.188 1.188 23 C 0.000 4.000 24 C -0.154 4.154 25 C 0.337 3.663 26 O -0.440 6.440 27 O -0.321 6.321 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.192 0.808 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.041 0.959 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.787 -6.374 5.991 13.127 hybrid contribution 0.950 1.918 -0.454 2.188 sum -8.837 -4.456 5.537 11.341 Atomic orbital electron populations 1.22112 0.72085 1.05433 1.04537 1.48725 1.07563 1.02629 1.58288 1.22063 0.91038 0.93627 1.01083 1.19832 0.94152 0.93958 1.16227 1.22722 0.94104 0.93760 0.98919 1.76825 1.01573 1.09168 1.26705 1.20242 0.87386 0.96416 1.03289 1.21520 0.98316 0.94160 0.99912 1.21342 0.96722 0.96183 0.99275 1.19430 0.92654 0.91830 0.98841 0.88311 1.21110 0.80716 0.83977 0.87001 1.90503 1.47770 1.83539 1.29451 1.43585 1.43849 1.06679 1.22847 1.19727 0.99272 1.39639 0.88607 0.87701 1.26348 0.98004 0.95684 0.99811 1.69811 1.22136 1.35525 1.26681 0.85160 0.77238 0.79119 0.77973 1.18226 1.21826 1.18787 1.21170 0.96276 0.91010 0.91561 1.21649 1.00922 0.93312 0.99493 1.23452 0.77797 0.82523 0.82549 1.90707 1.46089 1.70873 1.36364 1.84503 1.42631 1.44375 1.60625 0.89198 0.88029 0.88889 0.80840 0.88049 0.89770 0.88401 0.90619 0.94007 0.91581 0.92120 0.87273 0.95908 0.88385 0.86517 0.71274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 11.47 127.77 1.47 3.33 16 2 N -0.39 -11.90 4.02 -369.98 -1.49 -13.39 16 3 C 0.07 2.28 10.69 83.33 0.89 3.17 16 4 C -0.23 -8.49 5.05 -20.10 -0.10 -8.59 16 5 C 0.07 2.46 7.10 43.44 0.31 2.76 16 6 N -0.32 -10.93 12.56 -47.14 -0.59 -11.52 16 7 C -0.03 -0.90 6.31 30.05 0.19 -0.71 16 8 C -0.10 -2.62 5.86 30.72 0.18 -2.44 16 9 C -0.10 -3.44 5.17 30.73 0.16 -3.28 16 10 C -0.01 -0.21 2.35 -12.09 -0.03 -0.24 16 11 H 0.10 3.73 6.20 -2.39 -0.01 3.71 16 12 C 0.48 22.64 6.33 87.66 0.55 23.20 16 13 O -0.63 -33.00 15.80 -3.06 -0.05 -33.04 16 14 N -0.45 -21.77 2.54 -635.55 -1.61 -23.39 16 15 C -0.35 -16.12 8.49 84.04 0.71 -15.40 16 16 H 0.11 4.49 6.50 -2.91 -0.02 4.47 16 17 C 0.00 0.16 5.35 84.93 0.45 0.62 16 18 N -0.90 -47.67 10.80 21.66 0.23 -47.43 16 19 Si 0.98 37.39 29.55 68.60 2.03 39.42 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.29 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 23 C 0.12 6.08 4.18 86.38 0.36 6.44 16 24 C -0.11 -4.47 6.09 29.85 0.18 -4.29 16 25 C 0.49 17.96 8.33 71.24 0.59 18.55 16 26 O -0.55 -24.12 16.74 21.96 0.37 -23.76 16 27 O -0.51 -13.36 13.42 -51.39 -0.69 -14.05 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.17 5.45 8.06 -2.91 -0.02 5.43 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 1.85 8.10 -2.38 -0.02 1.83 16 36 H 0.04 1.63 8.07 -2.39 -0.02 1.61 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.27 13.65 8.31 -92.70 -0.77 12.88 16 39 H 0.11 5.91 5.23 -2.39 -0.01 5.89 16 40 H 0.02 1.24 7.50 -2.39 -0.02 1.22 16 41 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 43 H 0.43 6.94 9.10 -74.05 -0.67 6.27 16 Total: -1.00 -72.50 359.89 4.49 -68.01 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.38 Total: 36.04 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 5.92 Total: 23.11 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -3.46 Total: -95.73 kcal Atomic # 8 Polarization: -70.48 SS G_CDS: -0.37 Total: -70.85 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -72.50 4.49 -68.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600970439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.888 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds