Wall clock time and date at job start Tue Mar 31 2020 13:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40293 * 126.09295 * 2 1 4 4 C 1.31063 * 108.26871 * 180.02562 * 3 2 1 5 5 C 1.39292 * 108.08362 * 359.97438 * 4 3 2 6 6 C 1.34329 * 126.08873 * 179.97438 * 2 1 3 7 7 C 1.50818 * 128.03446 * 359.80784 * 6 2 1 8 8 C 1.53363 * 108.37915 * 196.63673 * 7 6 2 9 9 H 1.08994 * 109.47164 * 70.06481 * 8 7 6 10 10 C 1.50706 * 109.46682 * 190.04514 * 8 7 6 11 11 O 1.21295 * 119.99812 * 8.59555 * 10 8 7 12 12 N 1.34777 * 119.99934 * 188.59603 * 10 8 7 13 13 C 1.37090 * 120.00199 * 5.12858 * 12 10 8 14 14 H 1.08004 * 120.00243 * 232.34525 * 13 12 10 15 15 C 1.38958 * 119.99981 * 52.34402 * 13 12 10 16 16 N 1.31413 * 119.99588 * 17.49562 * 15 13 12 17 17 Si 1.86794 * 120.00140 * 197.49489 * 15 13 12 18 18 H 1.48498 * 109.47586 * 59.99877 * 17 15 13 19 19 H 1.48501 * 109.47166 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.47140 * 299.99893 * 17 15 13 21 21 C 1.46503 * 119.99756 * 185.13492 * 12 10 8 22 22 C 1.53002 * 109.47287 * 93.33338 * 21 12 10 23 23 C 1.50697 * 109.46758 * 179.97438 * 22 21 12 24 24 O 1.20832 * 120.00440 * 359.97438 * 23 22 21 25 25 O 1.34231 * 119.99983 * 179.97438 * 23 22 21 26 26 C 1.53111 * 109.50244 * 310.05075 * 8 7 6 27 27 C 1.50845 * 127.90274 * 179.67644 * 5 4 3 28 28 H 1.08997 * 109.47794 * 269.99952 * 1 2 3 29 29 H 1.08997 * 109.47058 * 30.00400 * 1 2 3 30 30 H 1.09007 * 109.47282 * 150.00248 * 1 2 3 31 31 H 1.08002 * 125.96070 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.68796 * 316.35944 * 7 6 2 33 33 H 1.09005 * 109.68262 * 76.87408 * 7 6 2 34 34 H 0.97003 * 119.99882 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.46820 * 213.33470 * 21 12 10 36 36 H 1.08998 * 109.46831 * 333.32976 * 21 12 10 37 37 H 1.08997 * 109.46734 * 299.99445 * 22 21 12 38 38 H 1.08996 * 109.46849 * 59.99640 * 22 21 12 39 39 H 0.96701 * 117.00140 * 179.97438 * 25 23 22 40 40 H 1.08994 * 109.47198 * 190.30108 * 26 8 7 41 41 H 1.09004 * 109.46350 * 310.28606 * 26 8 7 42 42 H 1.09001 * 109.68209 * 316.51905 * 27 5 4 43 43 H 1.09001 * 109.67926 * 77.07092 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5392 0.7325 -0.0006 5 6 3.5455 -0.6604 -0.0003 6 6 2.2562 -1.0855 0.0005 7 6 1.8437 -2.5362 0.0051 8 6 3.0538 -3.3818 0.4206 9 1 3.2698 -3.2132 1.4755 10 6 2.7476 -4.8404 0.1976 11 8 1.7377 -5.1651 -0.3907 12 7 3.5958 -5.7842 0.6519 13 6 4.6816 -5.4236 1.4072 14 1 5.6689 -5.7622 1.1296 15 6 4.5119 -4.6226 2.5299 16 7 3.3209 -4.4916 3.0696 17 14 5.9767 -3.7320 3.2719 18 1 6.5619 -2.8144 2.2616 19 1 5.5337 -2.9499 4.4539 20 1 6.9993 -4.7243 3.6904 21 6 3.3575 -7.1953 0.3385 22 6 4.1323 -7.5750 -0.9250 23 6 3.8876 -9.0267 -1.2469 24 8 3.1677 -9.6898 -0.5382 25 8 4.4693 -9.5833 -2.3210 26 6 4.2697 -2.9815 -0.4195 27 6 4.7399 -1.5817 -0.0075 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 4.4105 1.3706 -0.0003 32 1 1.0307 -2.6845 0.7160 33 1 1.5163 -2.8280 -0.9928 34 1 3.2023 -3.9321 3.8531 35 1 3.6935 -7.8140 1.1706 36 1 2.2921 -7.3559 0.1735 37 1 3.7961 -6.9563 -1.7570 38 1 5.1976 -7.4144 -0.7599 39 1 4.2827 -10.5176 -2.4865 40 1 5.0750 -3.6979 -0.2574 41 1 3.9960 -2.9754 -1.4746 42 1 5.4811 -1.2164 -0.7184 43 1 5.1769 -1.6239 0.9902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601030552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:58 Heat of formation + Delta-G solvation = -53.700221 kcal Electronic energy + Delta-G solvation = -28203.538048 eV Core-core repulsion = 24250.293316 eV Total energy + Delta-G solvation = -3953.244731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15884 -39.99108 -38.88233 -36.01254 -35.47205 -34.87010 -33.33832 -32.55339 -30.36617 -29.70043 -28.96137 -26.27712 -25.30068 -24.53992 -22.73586 -21.67263 -20.62826 -20.45052 -19.48325 -18.10272 -17.86729 -17.03423 -16.38125 -16.04264 -15.76488 -15.43348 -15.06821 -14.88440 -14.31317 -13.96493 -13.91078 -13.65682 -13.19737 -13.07490 -12.88064 -12.60125 -12.55686 -12.50617 -12.29962 -12.05332 -11.65804 -11.47698 -11.31290 -11.25402 -11.19615 -11.15208 -10.69063 -10.53622 -10.33369 -10.27296 -10.11031 -10.03182 -9.91477 -8.97699 -8.77882 -8.29530 -7.78279 -7.46756 -6.52343 -4.34445 2.21556 2.49461 2.79475 3.07516 3.13488 3.17295 3.18199 3.28484 3.93307 4.09768 4.69268 4.78980 4.81446 5.16213 5.27922 5.34913 5.39553 5.47438 5.51127 5.57189 5.66858 5.73095 5.82534 5.94030 6.04841 6.09977 6.14373 6.26563 6.36719 6.41663 6.48586 6.64433 6.65427 6.75495 6.85084 6.87407 6.99077 7.05896 7.24096 7.32996 7.39388 7.81389 8.03665 8.13658 8.51846 8.81983 9.45599 9.89535 10.52689 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.004519 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.737990 B = 6194.673863 C = 7256.034887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.373 5.373 3 N -0.316 5.316 4 C 0.050 3.950 5 C -0.242 4.242 6 C 0.101 3.899 7 C -0.038 4.038 8 C -0.092 4.092 9 H 0.129 0.871 10 C 0.526 3.474 11 O -0.609 6.609 12 N -0.453 5.453 13 C -0.343 4.343 14 H 0.084 0.916 15 C 0.054 3.946 16 N -0.852 5.852 17 Si 0.900 3.100 18 H -0.259 1.259 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.124 3.876 22 C -0.124 4.124 23 C 0.483 3.517 24 O -0.518 6.518 25 O -0.523 6.523 26 C -0.104 4.104 27 C -0.038 4.038 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.178 0.822 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.273 0.727 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 2.945 -6.243 7.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.155 5.155 3 N -0.137 5.137 4 C -0.134 4.134 5 C -0.253 4.253 6 C -0.028 4.028 7 C -0.077 4.077 8 C -0.114 4.114 9 H 0.146 0.854 10 C 0.316 3.684 11 O -0.494 6.494 12 N -0.172 5.172 13 C -0.471 4.471 14 H 0.102 0.898 15 C -0.153 4.153 16 N -0.487 5.487 17 Si 0.725 3.275 18 H -0.184 1.184 19 H -0.207 1.207 20 H -0.196 1.196 21 C 0.000 4.000 22 C -0.163 4.163 23 C 0.326 3.674 24 O -0.406 6.406 25 O -0.335 6.335 26 C -0.142 4.142 27 C -0.076 4.076 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.195 0.805 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.261 0.739 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.560 4.121 -6.072 7.359 hybrid contribution 0.995 -0.805 0.591 1.410 sum 1.555 3.316 -5.480 6.591 Atomic orbital electron populations 1.21790 0.74855 1.04104 1.03191 1.48119 1.06188 1.03617 1.57530 1.77383 1.01542 1.07862 1.26929 1.23486 0.95029 0.94631 1.00265 1.20002 0.94612 0.93551 1.17120 1.21165 0.90974 0.90895 0.99721 1.20184 0.99208 0.85514 1.02797 1.21344 0.93379 0.91495 1.05159 0.85390 1.20185 0.83042 0.87667 0.77462 1.90500 1.28557 1.83456 1.46905 1.43182 1.25287 1.02199 1.46574 1.19153 0.86879 1.34007 1.07030 0.89827 1.25542 0.96985 0.97831 0.94921 1.69974 1.22757 1.35683 1.20312 0.86447 0.81776 0.80147 0.79116 1.18356 1.20747 1.19643 1.21111 0.99387 0.85819 0.93680 1.21844 1.04755 0.87374 1.02317 1.23782 0.75704 0.91187 0.76764 1.90705 1.36057 1.64309 1.49496 1.84587 1.69599 1.32168 1.47109 1.21484 0.98411 0.96227 0.98036 1.20013 0.93401 0.92947 1.01272 0.90999 0.89704 0.89473 0.80525 0.90689 0.89703 0.91626 0.90757 0.90828 0.88010 0.87578 0.73942 0.89186 0.93142 0.91668 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 11.32 59.85 0.68 1.93 16 2 N -0.37 -6.24 4.00 -63.88 -0.26 -6.49 16 3 N -0.32 -5.46 12.59 30.54 0.38 -5.08 16 4 C 0.05 0.81 12.00 -17.49 -0.21 0.60 16 5 C -0.24 -4.24 5.91 -105.05 -0.62 -4.86 16 6 C 0.10 1.82 6.73 -82.33 -0.55 1.27 16 7 C -0.04 -0.72 4.65 -27.64 -0.13 -0.85 16 8 C -0.09 -1.93 1.60 -91.52 -0.15 -2.07 16 9 H 0.13 2.95 4.42 -51.93 -0.23 2.72 16 10 C 0.53 12.32 6.29 -10.98 -0.07 12.25 16 11 O -0.61 -15.46 15.28 5.54 0.08 -15.37 16 12 N -0.45 -10.30 2.43 -114.80 -0.28 -10.58 16 13 C -0.34 -7.75 7.11 -14.93 -0.11 -7.86 16 14 H 0.08 1.79 7.89 -52.48 -0.41 1.38 16 15 C 0.05 1.25 3.50 -17.46 -0.06 1.19 16 16 N -0.85 -21.25 11.46 55.50 0.64 -20.62 16 17 Si 0.90 17.93 29.26 -169.99 -4.97 12.96 16 18 H -0.26 -4.86 6.51 56.52 0.37 -4.49 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 C 0.12 2.60 4.75 -4.04 -0.02 2.58 16 22 C -0.12 -2.07 6.13 -27.88 -0.17 -2.24 16 23 C 0.48 7.65 8.33 36.00 0.30 7.95 16 24 O -0.52 -9.76 16.74 -18.75 -0.31 -10.07 16 25 O -0.52 -6.41 13.42 -39.26 -0.53 -6.94 16 26 C -0.10 -1.90 5.05 -26.51 -0.13 -2.03 16 27 C -0.04 -0.64 6.28 -27.65 -0.17 -0.81 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 31 H 0.18 2.22 8.06 -52.49 -0.42 1.79 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.62 7.66 -51.93 -0.40 1.23 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.07 1.59 8.02 -51.93 -0.42 1.17 16 36 H 0.07 1.69 7.22 -51.93 -0.38 1.31 16 37 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.40 3.06 9.10 45.56 0.41 3.48 16 40 H 0.09 1.68 6.42 -51.93 -0.33 1.34 16 41 H 0.05 0.89 8.11 -51.93 -0.42 0.46 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.18 7.19 -51.93 -0.37 0.80 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -30.95 354.71 -6.40 -37.35 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.08 Total: 12.43 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.42 Total: 7.06 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.49 Total: -42.77 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.76 Total: -32.38 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -4.97 Total: 12.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.95 -6.40 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601030552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.347 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds