Wall clock time and date at job start Tue Mar 31 2020 13:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40293 * 126.09295 * 2 1 4 4 C 1.31063 * 108.26871 * 180.02562 * 3 2 1 5 5 C 1.39292 * 108.08362 * 359.97438 * 4 3 2 6 6 C 1.34329 * 126.08873 * 179.97438 * 2 1 3 7 7 C 1.50818 * 128.03446 * 359.80784 * 6 2 1 8 8 C 1.53363 * 108.37915 * 196.63673 * 7 6 2 9 9 H 1.08994 * 109.47164 * 70.06481 * 8 7 6 10 10 C 1.50706 * 109.46682 * 190.04514 * 8 7 6 11 11 O 1.21295 * 119.99812 * 8.59555 * 10 8 7 12 12 N 1.34777 * 119.99934 * 188.59603 * 10 8 7 13 13 C 1.37090 * 120.00199 * 5.12858 * 12 10 8 14 14 H 1.08004 * 120.00243 * 232.34525 * 13 12 10 15 15 C 1.38958 * 119.99981 * 52.34402 * 13 12 10 16 16 N 1.31413 * 119.99588 * 17.49562 * 15 13 12 17 17 Si 1.86794 * 120.00140 * 197.49489 * 15 13 12 18 18 H 1.48498 * 109.47586 * 59.99877 * 17 15 13 19 19 H 1.48501 * 109.47166 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.47140 * 299.99893 * 17 15 13 21 21 C 1.46503 * 119.99756 * 185.13492 * 12 10 8 22 22 C 1.53002 * 109.47287 * 93.33338 * 21 12 10 23 23 C 1.50697 * 109.46758 * 179.97438 * 22 21 12 24 24 O 1.20832 * 120.00440 * 359.97438 * 23 22 21 25 25 O 1.34231 * 119.99983 * 179.97438 * 23 22 21 26 26 C 1.53111 * 109.50244 * 310.05075 * 8 7 6 27 27 C 1.50845 * 127.90274 * 179.67644 * 5 4 3 28 28 H 1.08997 * 109.47794 * 269.99952 * 1 2 3 29 29 H 1.08997 * 109.47058 * 30.00400 * 1 2 3 30 30 H 1.09007 * 109.47282 * 150.00248 * 1 2 3 31 31 H 1.08002 * 125.96070 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.68796 * 316.35944 * 7 6 2 33 33 H 1.09005 * 109.68262 * 76.87408 * 7 6 2 34 34 H 0.97003 * 119.99882 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.46820 * 213.33470 * 21 12 10 36 36 H 1.08998 * 109.46831 * 333.32976 * 21 12 10 37 37 H 1.08997 * 109.46734 * 299.99445 * 22 21 12 38 38 H 1.08996 * 109.46849 * 59.99640 * 22 21 12 39 39 H 0.96701 * 117.00140 * 179.97438 * 25 23 22 40 40 H 1.08994 * 109.47198 * 190.30108 * 26 8 7 41 41 H 1.09004 * 109.46350 * 310.28606 * 26 8 7 42 42 H 1.09001 * 109.68209 * 316.51905 * 27 5 4 43 43 H 1.09001 * 109.67926 * 77.07092 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2915 1.1337 0.0000 4 6 3.5392 0.7325 -0.0006 5 6 3.5455 -0.6604 -0.0003 6 6 2.2562 -1.0855 0.0005 7 6 1.8437 -2.5362 0.0051 8 6 3.0538 -3.3818 0.4206 9 1 3.2698 -3.2132 1.4755 10 6 2.7476 -4.8404 0.1976 11 8 1.7377 -5.1651 -0.3907 12 7 3.5958 -5.7842 0.6519 13 6 4.6816 -5.4236 1.4072 14 1 5.6689 -5.7622 1.1296 15 6 4.5119 -4.6226 2.5299 16 7 3.3209 -4.4916 3.0696 17 14 5.9767 -3.7320 3.2719 18 1 6.5619 -2.8144 2.2616 19 1 5.5337 -2.9499 4.4539 20 1 6.9993 -4.7243 3.6904 21 6 3.3575 -7.1953 0.3385 22 6 4.1323 -7.5750 -0.9250 23 6 3.8876 -9.0267 -1.2469 24 8 3.1677 -9.6898 -0.5382 25 8 4.4693 -9.5833 -2.3210 26 6 4.2697 -2.9815 -0.4195 27 6 4.7399 -1.5817 -0.0075 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 4.4105 1.3706 -0.0003 32 1 1.0307 -2.6845 0.7160 33 1 1.5163 -2.8280 -0.9928 34 1 3.2023 -3.9321 3.8531 35 1 3.6935 -7.8140 1.1706 36 1 2.2921 -7.3559 0.1735 37 1 3.7961 -6.9563 -1.7570 38 1 5.1976 -7.4144 -0.7599 39 1 4.2827 -10.5176 -2.4865 40 1 5.0750 -3.6979 -0.2574 41 1 3.9960 -2.9754 -1.4746 42 1 5.4811 -1.2164 -0.7184 43 1 5.1769 -1.6239 0.9902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601030552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:58 Heat of formation + Delta-G solvation = -73.247102 kcal Electronic energy + Delta-G solvation = -28204.385664 eV Core-core repulsion = 24250.293316 eV Total energy + Delta-G solvation = -3954.092348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46918 -41.31251 -40.55824 -37.26925 -36.91445 -36.65845 -34.59795 -34.19379 -31.99134 -31.05375 -30.37013 -27.45086 -27.01245 -26.13500 -24.17953 -23.09428 -21.94066 -21.74871 -21.19740 -19.52126 -19.12970 -18.66036 -17.77410 -17.44908 -17.14913 -16.90737 -16.53837 -16.43374 -15.95520 -15.49627 -15.24531 -15.00853 -14.59149 -14.40987 -14.22747 -14.18727 -13.98067 -13.76458 -13.63240 -13.30136 -13.20058 -13.09685 -12.88008 -12.75761 -12.66860 -12.53509 -12.20486 -12.13668 -11.94395 -11.64281 -11.54639 -11.47476 -11.36478 -10.62979 -10.15787 -10.08947 -9.27158 -9.09263 -8.30316 -6.17395 0.90412 1.22034 1.49993 1.55587 1.61438 1.62810 1.88707 2.02881 2.19518 2.43661 3.06152 3.09633 3.66676 3.75422 3.95708 4.00531 4.09836 4.20345 4.30703 4.33132 4.34676 4.48883 4.57475 4.58254 4.63664 4.67807 4.71381 4.83244 4.85975 4.97180 5.03529 5.12019 5.20505 5.24780 5.49786 5.51068 5.54368 5.61864 5.64983 5.83156 6.03866 6.11712 6.71788 6.76789 7.02506 7.04924 7.64540 8.10291 8.75274 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.004519 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.737990 B = 6194.673863 C = 7256.034887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.377 5.377 3 N -0.330 5.330 4 C 0.053 3.947 5 C -0.252 4.252 6 C 0.082 3.918 7 C -0.026 4.026 8 C -0.089 4.089 9 H 0.110 0.890 10 C 0.513 3.487 11 O -0.640 6.640 12 N -0.458 5.458 13 C -0.347 4.347 14 H 0.100 0.900 15 C 0.022 3.978 16 N -0.890 5.890 17 Si 0.951 3.049 18 H -0.234 1.234 19 H -0.295 1.295 20 H -0.267 1.267 21 C 0.124 3.876 22 C -0.113 4.113 23 C 0.496 3.504 24 O -0.554 6.554 25 O -0.507 6.507 26 C -0.098 4.098 27 C -0.032 4.032 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.213 0.787 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.270 0.730 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.127 0.873 39 H 0.427 0.573 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.441 4.015 -7.338 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.159 5.159 3 N -0.152 5.152 4 C -0.131 4.131 5 C -0.263 4.263 6 C -0.047 4.047 7 C -0.066 4.066 8 C -0.110 4.110 9 H 0.128 0.872 10 C 0.304 3.696 11 O -0.528 6.528 12 N -0.177 5.177 13 C -0.474 4.474 14 H 0.117 0.883 15 C -0.182 4.182 16 N -0.526 5.526 17 Si 0.774 3.226 18 H -0.157 1.157 19 H -0.222 1.222 20 H -0.192 1.192 21 C 0.000 4.000 22 C -0.152 4.152 23 C 0.339 3.661 24 O -0.445 6.445 25 O -0.321 6.321 26 C -0.135 4.135 27 C -0.071 4.071 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.229 0.771 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.123 0.877 38 H 0.145 0.855 39 H 0.289 0.711 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.115 0.885 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.799 5.160 -7.205 9.294 hybrid contribution 0.257 -1.236 0.913 1.558 sum 3.056 3.925 -6.293 8.021 Atomic orbital electron populations 1.22091 0.72945 1.05530 1.04216 1.48431 1.07449 1.03019 1.56993 1.77350 1.02255 1.08284 1.27302 1.24018 0.95685 0.94389 0.99018 1.20249 0.94510 0.94494 1.17056 1.21048 0.91935 0.90501 1.01244 1.19943 0.98160 0.86578 1.01898 1.21269 0.95221 0.90027 1.04517 0.87221 1.20719 0.82715 0.88937 0.77211 1.90465 1.29717 1.84114 1.48464 1.43379 1.25266 1.02733 1.46298 1.19515 0.87305 1.33761 1.06801 0.88252 1.26208 0.98801 0.98035 0.95107 1.70095 1.24968 1.36682 1.20894 0.85652 0.79075 0.79446 0.78427 1.15732 1.22160 1.19152 1.21046 0.98348 0.85090 0.95502 1.21578 1.05105 0.88389 1.00079 1.23410 0.75039 0.90637 0.76988 1.90708 1.37744 1.65032 1.50984 1.84505 1.68408 1.34179 1.45005 1.21440 0.96982 0.97368 0.97757 1.20010 0.93734 0.91602 1.01712 0.90172 0.87688 0.88710 0.77066 0.92231 0.90261 0.92057 0.91809 0.93754 0.87675 0.85471 0.71122 0.89422 0.92656 0.88530 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.20 11.32 127.77 1.45 3.64 16 2 N -0.38 -12.23 4.00 -356.01 -1.42 -13.66 16 3 N -0.33 -10.79 12.59 -57.28 -0.72 -11.51 16 4 C 0.05 1.57 12.00 85.06 1.02 2.59 16 5 C -0.25 -8.34 5.91 -20.14 -0.12 -8.46 16 6 C 0.08 2.90 6.73 41.64 0.28 3.18 16 7 C -0.03 -1.03 4.65 30.01 0.14 -0.89 16 8 C -0.09 -3.74 1.60 -11.38 -0.02 -3.76 16 9 H 0.11 5.12 4.42 -2.39 -0.01 5.11 16 10 C 0.51 24.59 6.29 87.66 0.55 25.14 16 11 O -0.64 -33.70 15.28 -3.08 -0.05 -33.75 16 12 N -0.46 -21.11 2.43 -635.51 -1.54 -22.65 16 13 C -0.35 -15.48 7.11 84.04 0.60 -14.89 16 14 H 0.10 4.07 7.89 -2.91 -0.02 4.05 16 15 C 0.02 1.02 3.50 84.93 0.30 1.32 16 16 N -0.89 -45.34 11.46 21.67 0.25 -45.10 16 17 Si 0.95 35.70 29.26 68.60 2.01 37.71 16 18 H -0.23 -7.82 6.51 99.48 0.65 -7.17 16 19 H -0.30 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 21 C 0.12 5.31 4.75 86.38 0.41 5.72 16 22 C -0.11 -3.68 6.13 29.85 0.18 -3.50 16 23 C 0.50 15.13 8.33 71.23 0.59 15.72 16 24 O -0.55 -20.83 16.74 21.95 0.37 -20.46 16 25 O -0.51 -11.11 13.42 -51.42 -0.69 -11.80 16 26 C -0.10 -3.44 5.05 30.74 0.16 -3.29 16 27 C -0.03 -1.00 6.28 30.00 0.19 -0.81 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.09 2.07 7.90 -2.38 -0.02 2.05 16 31 H 0.21 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.08 3.12 7.66 -2.38 -0.02 3.10 16 34 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 35 H 0.06 2.80 8.02 -2.39 -0.02 2.78 16 36 H 0.04 2.13 7.22 -2.39 -0.02 2.11 16 37 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 38 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 39 H 0.43 5.25 9.10 -74.06 -0.67 4.58 16 40 H 0.09 3.11 6.42 -2.39 -0.02 3.10 16 41 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 42 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.06 1.97 7.19 -2.39 -0.02 1.95 16 Total: -1.00 -67.76 354.71 4.24 -63.52 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.32 Total: 35.97 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 5.72 Total: 21.72 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -3.44 Total: -92.92 kcal Atomic # 8 Polarization: -65.63 SS G_CDS: -0.37 Total: -66.00 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.01 Total: 37.71 kcal Total: -67.76 4.24 -63.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601030552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.725 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds