Wall clock time and date at job start Tue Mar 31 2020 13:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99835 * 2 1 4 4 O 1.21282 * 119.99826 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99639 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46818 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47013 * 180.02562 * 6 5 3 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.09007 * 109.47058 * 60.00373 * 1 2 3 28 28 H 1.09007 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47430 * 300.00245 * 1 2 3 30 30 H 0.97001 * 119.99502 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47343 * 59.99975 * 5 3 2 32 32 H 1.09002 * 109.47486 * 299.99262 * 5 3 2 33 33 H 1.08997 * 109.47025 * 59.99975 * 6 5 3 34 34 H 1.08995 * 109.46911 * 299.99706 * 6 5 3 35 35 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 36 36 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 38 38 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1558 2.6097 -0.0002 7 7 5.6209 2.6097 -0.0002 8 6 6.2947 3.7769 -0.0003 9 8 5.6868 4.8299 -0.0009 10 7 7.6425 3.7769 0.0001 11 6 8.3751 5.0456 -0.0006 12 6 9.8567 4.7703 -0.0005 13 6 10.5360 4.6451 1.1980 14 6 11.8956 4.3929 1.2022 15 6 12.5783 4.2588 0.0090 16 6 11.9003 4.3896 -1.1956 17 8 12.5696 4.2643 -2.3700 18 6 13.9097 4.1337 -2.2998 19 1 14.3946 4.0503 -1.3384 20 6 14.6654 4.1064 -3.4620 21 7 14.0749 4.2085 -4.6331 22 14 16.5222 3.9262 -3.3648 23 1 16.9364 3.8316 -1.9418 24 1 16.9383 2.6953 -4.0838 25 1 17.1677 5.1078 -3.9913 26 6 10.5346 4.6436 -1.1966 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9500 -0.8401 0.0004 31 1 4.0095 0.6531 -0.8891 32 1 4.0089 0.6536 0.8909 33 1 3.7921 3.1241 0.8893 34 1 3.7929 3.1229 -0.8907 35 1 6.1059 1.7696 0.0006 36 1 8.1275 2.9368 0.0002 37 1 8.1114 5.6178 0.8890 38 1 8.1120 5.6165 -0.8910 39 1 10.0034 4.7444 2.1323 40 1 12.4233 4.2961 2.1395 41 1 13.6393 4.0568 0.0130 42 1 14.6036 4.1898 -5.4461 43 1 10.0038 4.7422 -2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647087096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:36 Heat of formation + Delta-G solvation = -72.046456 kcal Electronic energy + Delta-G solvation = -25061.316478 eV Core-core repulsion = 21107.276195 eV Total energy + Delta-G solvation = -3954.040284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28598 -39.77758 -39.05429 -36.88643 -35.47945 -34.98399 -34.37396 -32.35083 -31.64382 -30.40137 -29.11117 -27.39640 -25.88183 -25.08986 -23.42877 -21.71630 -21.07386 -20.87299 -20.73137 -18.72673 -17.68065 -17.51074 -17.05885 -16.44486 -16.33368 -15.96868 -15.53318 -15.12855 -14.73734 -14.53778 -14.46026 -14.25833 -14.11375 -13.73039 -13.55367 -13.49050 -13.11351 -12.78449 -12.70106 -12.38133 -12.23068 -12.19866 -11.78754 -11.64350 -11.38819 -10.95802 -10.81382 -10.69371 -10.47252 -10.41046 -10.14507 -9.63018 -9.41505 -9.28742 -8.90732 -8.75736 -8.25569 -7.33568 -6.50176 -4.09692 1.85802 2.19781 2.25882 2.54081 3.03389 3.09707 3.10733 3.15897 3.28689 3.91569 4.15302 4.34614 4.49373 4.58896 4.62888 4.78584 4.93997 4.99963 5.04136 5.06504 5.29045 5.33800 5.54192 5.60141 5.72403 5.78489 5.85561 5.88889 5.96383 6.07349 6.25111 6.34045 6.55396 6.57846 6.81592 6.89100 6.96238 7.00556 7.19464 7.27098 7.35178 7.70485 7.75333 7.94043 8.04781 8.65323 8.95323 9.64167 10.67664 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.001828 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.015663 B =15311.583606 C =15999.847327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.738 5.738 3 C 0.516 3.484 4 O -0.531 6.531 5 C -0.154 4.154 6 C 0.155 3.845 7 N -0.752 5.752 8 C 0.703 3.297 9 O -0.591 6.591 10 N -0.736 5.736 11 C 0.186 3.814 12 C -0.073 4.073 13 C -0.194 4.194 14 C -0.077 4.077 15 C -0.226 4.226 16 C 0.150 3.850 17 O -0.177 6.177 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.170 4.170 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.403 0.597 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.395 0.605 36 H 0.398 0.602 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.270 0.730 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.177 -11.887 10.510 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.390 5.390 3 C 0.302 3.698 4 O -0.407 6.407 5 C -0.194 4.194 6 C 0.030 3.970 7 N -0.409 5.409 8 C 0.403 3.597 9 O -0.469 6.469 10 N -0.391 5.391 11 C 0.063 3.937 12 C -0.073 4.073 13 C -0.213 4.213 14 C -0.095 4.095 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.080 6.080 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.189 4.189 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.237 0.763 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.229 0.771 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.080 0.920 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.218 -10.098 10.011 23.906 hybrid contribution 1.726 -1.458 0.063 2.260 sum -17.491 -11.556 10.074 23.259 Atomic orbital electron populations 1.21555 0.79421 1.02286 1.02531 1.45806 1.07955 1.08726 1.76555 1.20451 0.89835 0.83710 0.75816 1.90775 1.70416 1.31143 1.48335 1.21818 0.92558 0.99735 1.05318 1.20796 0.78108 0.94131 1.03984 1.45043 1.06865 1.07425 1.81541 1.15905 0.81846 0.83984 0.77954 1.90939 1.67921 1.30246 1.57767 1.45247 1.04097 1.10184 1.79588 1.20002 0.86821 0.84364 1.02505 1.19289 0.93503 1.01492 0.93045 1.20493 0.94545 1.09955 0.96355 1.20745 0.93997 0.97856 0.96903 1.21242 1.01125 1.10068 0.92100 1.19331 0.91751 0.92672 0.86648 1.83983 1.21251 1.78079 1.24717 1.21373 0.78679 1.52129 0.94741 0.88984 1.25298 1.00469 0.96540 0.94188 1.70043 1.36279 1.45728 0.97493 0.85643 0.80613 0.78305 0.78832 1.19091 1.20144 1.20093 1.20101 0.92272 1.09041 0.97532 0.92092 0.90595 0.92129 0.76347 0.87941 0.88020 0.90779 0.90728 0.77127 0.76776 0.91083 0.90991 0.87474 0.87307 0.85486 0.92003 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 10.70 59.85 0.64 1.03 16 2 N -0.74 -3.59 5.71 -67.07 -0.38 -3.98 16 3 C 0.52 4.16 7.83 -10.99 -0.09 4.08 16 4 O -0.53 -6.86 15.98 5.56 0.09 -6.77 16 5 C -0.15 -0.85 5.81 -27.88 -0.16 -1.02 16 6 C 0.15 1.53 4.96 -4.04 -0.02 1.51 16 7 N -0.75 -7.45 5.56 -65.22 -0.36 -7.81 16 8 C 0.70 10.01 8.57 -86.91 -0.74 9.27 16 9 O -0.59 -11.04 16.34 5.29 0.09 -10.95 16 10 N -0.74 -9.68 5.55 -66.42 -0.37 -10.05 16 11 C 0.19 2.79 5.80 -5.19 -0.03 2.76 16 12 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 13 C -0.19 -3.13 9.70 -39.53 -0.38 -3.52 16 14 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 15 C -0.23 -4.67 9.17 -39.40 -0.36 -5.03 16 16 C 0.15 3.46 6.65 -39.11 -0.26 3.20 16 17 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 18 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 19 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 22 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.17 -3.40 9.65 -39.39 -0.38 -3.78 16 27 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.40 0.64 8.83 -40.82 -0.36 0.28 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.40 2.57 8.49 -40.82 -0.35 2.23 16 36 H 0.40 4.46 8.48 -40.82 -0.35 4.11 16 37 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.13 2.64 5.64 -52.48 -0.30 2.34 16 42 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -36.46 374.75 -7.91 -44.37 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.82 Total: 7.86 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.54 Total: -4.41 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.36 Total: -45.89 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.18 Total: -22.63 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.46 -7.91 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647087096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.676 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds