Wall clock time and date at job start Tue Mar 31 2020 13:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99835 * 2 1 4 4 O 1.21282 * 119.99826 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99639 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46818 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47013 * 180.02562 * 6 5 3 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.09007 * 109.47058 * 60.00373 * 1 2 3 28 28 H 1.09007 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47430 * 300.00245 * 1 2 3 30 30 H 0.97001 * 119.99502 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47343 * 59.99975 * 5 3 2 32 32 H 1.09002 * 109.47486 * 299.99262 * 5 3 2 33 33 H 1.08997 * 109.47025 * 59.99975 * 6 5 3 34 34 H 1.08995 * 109.46911 * 299.99706 * 6 5 3 35 35 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 36 36 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 38 38 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1558 2.6097 -0.0002 7 7 5.6209 2.6097 -0.0002 8 6 6.2947 3.7769 -0.0003 9 8 5.6868 4.8299 -0.0009 10 7 7.6425 3.7769 0.0001 11 6 8.3751 5.0456 -0.0006 12 6 9.8567 4.7703 -0.0005 13 6 10.5360 4.6451 1.1980 14 6 11.8956 4.3929 1.2022 15 6 12.5783 4.2588 0.0090 16 6 11.9003 4.3896 -1.1956 17 8 12.5696 4.2643 -2.3700 18 6 13.9097 4.1337 -2.2998 19 1 14.3946 4.0503 -1.3384 20 6 14.6654 4.1064 -3.4620 21 7 14.0749 4.2085 -4.6331 22 14 16.5222 3.9262 -3.3648 23 1 16.9364 3.8316 -1.9418 24 1 16.9383 2.6953 -4.0838 25 1 17.1677 5.1078 -3.9913 26 6 10.5346 4.6436 -1.1966 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9500 -0.8401 0.0004 31 1 4.0095 0.6531 -0.8891 32 1 4.0089 0.6536 0.8909 33 1 3.7921 3.1241 0.8893 34 1 3.7929 3.1229 -0.8907 35 1 6.1059 1.7696 0.0006 36 1 8.1275 2.9368 0.0002 37 1 8.1114 5.6178 0.8890 38 1 8.1120 5.6165 -0.8910 39 1 10.0034 4.7444 2.1323 40 1 12.4233 4.2961 2.1395 41 1 13.6393 4.0568 0.0130 42 1 14.6036 4.1898 -5.4461 43 1 10.0038 4.7422 -2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647087096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:35 Heat of formation + Delta-G solvation = -102.046140 kcal Electronic energy + Delta-G solvation = -25062.617362 eV Core-core repulsion = 21107.276195 eV Total energy + Delta-G solvation = -3955.341168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25660 -40.79937 -40.50306 -38.50702 -36.40798 -35.68205 -35.59988 -34.27701 -32.67310 -31.56120 -30.67891 -28.07453 -27.45163 -26.60031 -24.22398 -23.24201 -22.44331 -22.05100 -21.45469 -19.93921 -19.29856 -18.70271 -18.20141 -17.22596 -17.17919 -16.78021 -16.75158 -16.56739 -16.15949 -16.08071 -15.59666 -15.38583 -15.31185 -15.11581 -14.79589 -14.37536 -14.32118 -13.91001 -13.84654 -13.63661 -13.32401 -13.14381 -13.02006 -12.83703 -12.54683 -12.44651 -12.33885 -12.25720 -12.07549 -11.51182 -11.19187 -11.03257 -10.81049 -10.42643 -10.13782 -9.79773 -9.75160 -9.02031 -8.46147 -6.14586 0.37918 0.72049 1.36823 1.44328 1.54855 1.60399 1.67172 2.13845 2.18200 2.38066 2.83499 3.14279 3.37055 3.46531 3.67248 3.85132 4.04109 4.10195 4.11795 4.32958 4.44556 4.47287 4.55074 4.56926 4.62011 4.67585 4.74945 4.87666 4.94548 4.96826 5.03687 5.13333 5.27507 5.41303 5.43600 5.44827 5.64018 5.72351 5.73884 5.99127 6.03433 6.18588 6.54320 6.98882 7.09123 7.26058 7.56763 7.79483 8.77171 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.001828 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.015663 B =15311.583606 C =15999.847327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.721 5.721 3 C 0.509 3.491 4 O -0.591 6.591 5 C -0.137 4.137 6 C 0.156 3.844 7 N -0.729 5.729 8 C 0.699 3.301 9 O -0.639 6.639 10 N -0.726 5.726 11 C 0.193 3.807 12 C -0.057 4.057 13 C -0.166 4.166 14 C -0.069 4.069 15 C -0.233 4.233 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.249 1.249 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.179 4.179 27 H 0.045 0.955 28 H 0.111 0.889 29 H 0.047 0.953 30 H 0.422 0.578 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.416 0.584 36 H 0.411 0.589 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.272 0.728 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.973 -14.067 13.620 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.374 5.374 3 C 0.296 3.704 4 O -0.472 6.472 5 C -0.177 4.177 6 C 0.031 3.969 7 N -0.387 5.387 8 C 0.399 3.601 9 O -0.520 6.520 10 N -0.382 5.382 11 C 0.069 3.931 12 C -0.058 4.058 13 C -0.185 4.185 14 C -0.087 4.087 15 C -0.253 4.253 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.488 4.488 19 H 0.122 0.878 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.172 1.172 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.199 4.199 27 H 0.064 0.936 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.260 0.740 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.254 0.746 36 H 0.247 0.753 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.025 -12.394 13.179 26.253 hybrid contribution 1.362 -0.785 -0.651 1.701 sum -17.663 -13.178 12.528 25.350 Atomic orbital electron populations 1.21657 0.79208 1.04195 1.01205 1.45719 1.08238 1.08756 1.74672 1.20924 0.90899 0.83612 0.74968 1.90759 1.71665 1.33354 1.51372 1.21739 0.90639 0.96965 1.08388 1.20703 0.77740 0.96914 1.01537 1.44803 1.06867 1.07109 1.79881 1.16095 0.81928 0.84375 0.77695 1.90915 1.68852 1.32366 1.59897 1.45004 1.03807 1.10103 1.79301 1.19856 0.85561 0.85184 1.02539 1.19419 0.94325 0.99881 0.92187 1.20998 0.94223 1.05893 0.97393 1.21160 0.94499 0.96032 0.97009 1.21375 1.01103 1.10210 0.92585 1.19853 0.92846 0.94454 0.86686 1.83949 1.21669 1.81167 1.27190 1.21870 0.79183 1.52147 0.95561 0.87840 1.26581 1.05933 0.96066 0.93528 1.70191 1.38462 1.48854 0.98439 0.84528 0.73618 0.78380 0.79682 1.17238 1.19411 1.19667 1.20215 0.91470 1.09606 0.98639 0.93588 0.87012 0.93412 0.74035 0.84992 0.84528 0.93074 0.93657 0.74634 0.75327 0.89848 0.92385 0.83406 0.83300 0.86164 0.91919 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.70 127.77 1.37 2.01 16 2 N -0.72 -5.48 5.71 -484.50 -2.77 -8.24 16 3 C 0.51 7.63 7.83 87.66 0.69 8.32 16 4 O -0.59 -15.80 15.98 -3.04 -0.05 -15.84 16 5 C -0.14 -1.16 5.81 29.85 0.17 -0.98 16 6 C 0.16 2.99 4.96 86.38 0.43 3.42 16 7 N -0.73 -13.01 5.56 -478.53 -2.66 -15.67 16 8 C 0.70 19.02 8.57 179.05 1.53 20.55 16 9 O -0.64 -23.89 16.34 -3.99 -0.07 -23.95 16 10 N -0.73 -17.54 5.55 -482.30 -2.68 -20.22 16 11 C 0.19 5.40 5.80 85.63 0.50 5.90 16 12 C -0.06 -1.80 5.25 -19.88 -0.10 -1.90 16 13 C -0.17 -4.61 9.70 22.30 0.22 -4.39 16 14 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 15 C -0.23 -9.43 9.17 22.39 0.21 -9.22 16 16 C 0.11 5.30 6.65 22.58 0.15 5.45 16 17 O -0.23 -13.65 9.76 -22.74 -0.22 -13.87 16 18 C -0.41 -23.32 9.49 67.92 0.64 -22.67 16 19 H 0.10 5.33 5.21 -2.91 -0.02 5.31 16 20 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 21 N -0.92 -55.92 13.67 21.61 0.30 -55.62 16 22 Si 1.02 41.91 29.55 68.60 2.03 43.94 16 23 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 C -0.18 -7.28 9.65 22.39 0.22 -7.06 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.42 -0.13 8.83 -92.71 -0.82 -0.95 16 31 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.42 3.97 8.49 -92.70 -0.79 3.18 16 36 H 0.41 7.97 8.48 -92.71 -0.79 7.19 16 37 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 38 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 39 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.12 4.96 5.64 -2.91 -0.02 4.95 16 42 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -87.84 374.75 -0.73 -88.58 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -1.32 Total: 24.24 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 6.70 Total: -3.33 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -7.81 Total: -99.75 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.34 Total: -53.67 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -87.84 -0.73 -88.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647087096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.471 kcal (2) G-P(sol) polarization free energy of solvation -87.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds