Wall clock time and date at job start Tue Mar 31 2020 13:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99931 * 2 1 4 4 C 1.52998 * 109.46563 * 269.99851 * 3 2 1 5 5 C 1.50704 * 109.46966 * 180.02562 * 4 3 2 6 6 N 1.34771 * 119.99915 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99760 * 359.97438 * 5 4 3 8 8 C 1.34776 * 120.00234 * 179.97438 * 2 1 3 9 9 O 1.21586 * 120.00194 * 180.02562 * 8 2 1 10 10 N 1.34783 * 119.99844 * 0.02562 * 8 2 1 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 2 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.09008 * 109.47437 * 270.00326 * 1 2 3 28 28 H 1.09004 * 109.47313 * 30.00339 * 1 2 3 29 29 H 1.09007 * 109.47099 * 150.00545 * 1 2 3 30 30 H 1.08996 * 109.46836 * 29.99385 * 3 2 1 31 31 H 1.08995 * 109.47304 * 149.99583 * 3 2 1 32 32 H 1.09001 * 109.47434 * 299.99724 * 4 3 2 33 33 H 1.08995 * 109.47529 * 59.99870 * 4 3 2 34 34 H 0.96995 * 120.00672 * 359.97438 * 6 5 4 35 35 H 0.97009 * 119.99787 * 180.02562 * 6 5 4 36 36 H 0.97004 * 119.99718 * 0.02562 * 10 8 2 37 37 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 38 38 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7103 -1.4425 5 6 3.2065 3.0151 -1.4426 6 7 3.5430 3.5988 -2.6098 7 8 3.5096 3.5404 -0.3923 8 6 2.1389 -1.1672 0.0005 9 8 3.3548 -1.1672 0.0010 10 7 1.4650 -2.3344 0.0005 11 6 2.1975 -3.6032 0.0005 12 6 1.2182 -4.7486 -0.0001 13 6 0.7691 -5.2742 1.1980 14 6 -0.1290 -6.3256 1.2016 15 6 -0.5855 -6.8499 0.0081 16 6 -0.1322 -6.3282 -1.1963 17 8 -0.5744 -6.8453 -2.3710 18 6 -1.3577 -7.9406 -2.3014 19 1 -1.6731 -8.3187 -1.3401 20 6 -1.7581 -8.5814 -3.4639 21 7 -1.3736 -8.1212 -4.6347 22 14 -2.8427 -10.0993 -3.3674 23 1 -4.2700 -9.6905 -3.3963 24 1 -2.5581 -10.9855 -4.5246 25 1 -2.5621 -10.8287 -2.1046 26 6 0.7705 -5.2725 -1.1966 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8901 -0.5138 30 1 1.6083 2.0284 0.5137 31 1 3.1498 1.1385 0.5139 32 1 3.0415 0.9507 -1.9563 33 1 1.5001 1.8406 -1.9564 34 1 3.3003 3.1790 -3.4499 35 1 4.0287 4.4385 -2.6099 36 1 0.4950 -2.3344 -0.0002 37 1 2.8241 -3.6608 0.8906 38 1 2.8242 -3.6608 -0.8894 39 1 1.1207 -4.8626 2.1326 40 1 -0.4775 -6.7341 2.1386 41 1 -1.2909 -7.6677 0.0115 42 1 -1.6534 -8.5697 -5.4479 43 1 1.1221 -4.8621 -2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649801847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:29 Heat of formation + Delta-G solvation = -67.718082 kcal Electronic energy + Delta-G solvation = -25816.916719 eV Core-core repulsion = 21863.064127 eV Total energy + Delta-G solvation = -3953.852591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39851 -39.61374 -39.08838 -36.93485 -35.83358 -34.58112 -33.99901 -32.37174 -31.78248 -30.39567 -29.12035 -27.05329 -26.14426 -25.25092 -23.89318 -21.73230 -20.93145 -20.75134 -19.92132 -18.47485 -17.73111 -17.58559 -17.17409 -16.97692 -16.09984 -15.78105 -15.69577 -15.18301 -14.73657 -14.53777 -14.42567 -14.10515 -13.83961 -13.62542 -13.54480 -13.36735 -13.21865 -12.71463 -12.60053 -12.49289 -12.30641 -12.11393 -11.69384 -11.40563 -11.29522 -10.94807 -10.83829 -10.71927 -10.49854 -10.36532 -10.13088 -10.04238 -9.43401 -9.11759 -8.91703 -8.67415 -8.27389 -7.35271 -6.51672 -4.11155 1.84295 2.24373 2.32708 2.62499 3.07819 3.09501 3.14118 3.15445 3.34324 3.90383 3.96962 4.50554 4.54566 4.73966 4.76495 4.88450 4.92064 5.04585 5.19547 5.22622 5.26719 5.44795 5.49653 5.53729 5.75994 5.79534 5.83964 5.92082 6.05486 6.22788 6.30081 6.41106 6.53579 6.55321 6.79731 6.82950 6.95090 6.98016 7.17486 7.25566 7.33365 7.68649 7.91475 7.92309 7.93325 8.58466 8.93851 9.62382 10.66107 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.002204 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.642171 B =12699.482389 C =13556.595683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.637 5.637 3 C 0.151 3.849 4 C -0.161 4.161 5 C 0.524 3.476 6 N -0.858 5.858 7 O -0.545 6.545 8 C 0.704 3.296 9 O -0.591 6.591 10 N -0.735 5.735 11 C 0.185 3.815 12 C -0.073 4.073 13 C -0.194 4.194 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.150 3.850 17 O -0.177 6.177 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.170 4.170 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.402 0.598 35 H 0.401 0.599 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.271 0.729 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 17.157 5.320 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.374 5.374 3 C 0.026 3.974 4 C -0.203 4.203 5 C 0.308 3.692 6 N -0.421 5.421 7 O -0.422 6.422 8 C 0.405 3.595 9 O -0.469 6.469 10 N -0.391 5.391 11 C 0.062 3.938 12 C -0.073 4.073 13 C -0.213 4.213 14 C -0.095 4.095 15 C -0.245 4.245 16 C 0.096 3.904 17 O -0.080 6.080 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.190 4.190 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.231 0.769 35 H 0.231 0.769 36 H 0.235 0.765 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.145 0.855 42 H 0.080 0.920 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.296 17.310 5.609 18.492 hybrid contribution -1.122 -0.735 -0.536 1.444 sum 2.174 16.575 5.073 17.470 Atomic orbital electron populations 1.21771 0.79647 1.03216 1.02041 1.47032 1.06426 1.04958 1.79005 1.20966 0.98717 0.83394 0.94277 1.22086 1.01620 0.95207 1.01362 1.20581 0.78657 0.86314 0.83603 1.43907 1.61495 1.27946 1.08764 1.90761 1.54769 1.65352 1.31299 1.15916 0.85314 0.80386 0.77894 1.90917 1.11509 1.86278 1.58196 1.45423 1.10157 1.04334 1.79225 1.20012 0.92307 0.79026 1.02473 1.19283 0.98244 0.96755 0.93060 1.20497 1.03523 1.00946 0.96370 1.20751 0.96243 0.95548 0.96924 1.21242 1.06151 1.05008 0.92094 1.19327 0.91858 0.92568 0.86651 1.83980 1.58668 1.40657 1.24684 1.21321 1.27456 1.03421 0.94719 0.89037 1.25294 0.97993 0.98999 0.94188 1.70031 1.42540 1.39527 0.97503 0.85711 0.79424 0.79827 0.78473 1.19859 1.20216 1.19168 1.20086 1.01679 0.99777 0.97474 0.92398 0.90821 0.91062 0.89828 0.88869 0.88038 0.88685 0.76925 0.76890 0.76507 0.91070 0.91024 0.87467 0.87281 0.85478 0.91951 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.20 59.85 0.61 1.18 16 2 N -0.64 -6.77 2.87 -187.35 -0.54 -7.30 16 3 C 0.15 1.53 4.70 -4.04 -0.02 1.51 16 4 C -0.16 -1.32 6.02 -27.88 -0.17 -1.48 16 5 C 0.52 4.79 8.10 -10.99 -0.09 4.70 16 6 N -0.86 -4.63 8.87 31.22 0.28 -4.35 16 7 O -0.54 -7.23 16.82 5.55 0.09 -7.13 16 8 C 0.70 9.91 8.28 -86.91 -0.72 9.19 16 9 O -0.59 -10.46 15.92 5.29 0.08 -10.38 16 10 N -0.74 -9.73 5.42 -66.42 -0.36 -10.09 16 11 C 0.19 2.73 5.80 -5.19 -0.03 2.70 16 12 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 13 C -0.19 -3.11 9.70 -39.53 -0.38 -3.50 16 14 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 15 C -0.23 -4.61 9.17 -39.40 -0.36 -4.97 16 16 C 0.15 3.42 6.65 -39.11 -0.26 3.16 16 17 O -0.18 -4.84 9.76 0.05 0.00 -4.84 16 18 C -0.39 -10.60 9.49 30.89 0.29 -10.31 16 19 H 0.09 2.27 5.21 -52.49 -0.27 2.00 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 22 Si 0.94 19.91 29.55 -169.99 -5.02 14.89 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.17 -3.36 9.65 -39.39 -0.38 -3.74 16 27 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.07 0.39 8.07 -51.93 -0.42 -0.02 16 29 H 0.07 0.53 6.36 -51.93 -0.33 0.19 16 30 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 31 H 0.09 1.20 7.38 -51.93 -0.38 0.82 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 1.11 8.83 -40.82 -0.36 0.75 16 35 H 0.40 1.82 8.93 -40.82 -0.36 1.46 16 36 H 0.40 4.67 6.19 -40.82 -0.25 4.42 16 37 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 38 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -34.89 370.45 -7.28 -42.17 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.61 Total: 9.37 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.55 Total: -4.07 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.14 Total: -45.60 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.18 Total: -22.35 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.89 -7.28 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649801847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.547 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds