Wall clock time and date at job start Tue Mar 31 2020 13:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99931 * 2 1 4 4 C 1.52998 * 109.46563 * 269.99851 * 3 2 1 5 5 C 1.50704 * 109.46966 * 180.02562 * 4 3 2 6 6 N 1.34771 * 119.99915 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99760 * 359.97438 * 5 4 3 8 8 C 1.34776 * 120.00234 * 179.97438 * 2 1 3 9 9 O 1.21586 * 120.00194 * 180.02562 * 8 2 1 10 10 N 1.34783 * 119.99844 * 0.02562 * 8 2 1 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 2 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.09008 * 109.47437 * 270.00326 * 1 2 3 28 28 H 1.09004 * 109.47313 * 30.00339 * 1 2 3 29 29 H 1.09007 * 109.47099 * 150.00545 * 1 2 3 30 30 H 1.08996 * 109.46836 * 29.99385 * 3 2 1 31 31 H 1.08995 * 109.47304 * 149.99583 * 3 2 1 32 32 H 1.09001 * 109.47434 * 299.99724 * 4 3 2 33 33 H 1.08995 * 109.47529 * 59.99870 * 4 3 2 34 34 H 0.96995 * 120.00672 * 359.97438 * 6 5 4 35 35 H 0.97009 * 119.99787 * 180.02562 * 6 5 4 36 36 H 0.97004 * 119.99718 * 0.02562 * 10 8 2 37 37 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 38 38 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 39 39 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 40 40 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 42 42 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7103 -1.4425 5 6 3.2065 3.0151 -1.4426 6 7 3.5430 3.5988 -2.6098 7 8 3.5096 3.5404 -0.3923 8 6 2.1389 -1.1672 0.0005 9 8 3.3548 -1.1672 0.0010 10 7 1.4650 -2.3344 0.0005 11 6 2.1975 -3.6032 0.0005 12 6 1.2182 -4.7486 -0.0001 13 6 0.7691 -5.2742 1.1980 14 6 -0.1290 -6.3256 1.2016 15 6 -0.5855 -6.8499 0.0081 16 6 -0.1322 -6.3282 -1.1963 17 8 -0.5744 -6.8453 -2.3710 18 6 -1.3577 -7.9406 -2.3014 19 1 -1.6731 -8.3187 -1.3401 20 6 -1.7581 -8.5814 -3.4639 21 7 -1.3736 -8.1212 -4.6347 22 14 -2.8427 -10.0993 -3.3674 23 1 -4.2700 -9.6905 -3.3963 24 1 -2.5581 -10.9855 -4.5246 25 1 -2.5621 -10.8287 -2.1046 26 6 0.7705 -5.2725 -1.1966 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8901 -0.5138 30 1 1.6083 2.0284 0.5137 31 1 3.1498 1.1385 0.5139 32 1 3.0415 0.9507 -1.9563 33 1 1.5001 1.8406 -1.9564 34 1 3.3003 3.1790 -3.4499 35 1 4.0287 4.4385 -2.6099 36 1 0.4950 -2.3344 -0.0002 37 1 2.8241 -3.6608 0.8906 38 1 2.8242 -3.6608 -0.8894 39 1 1.1207 -4.8626 2.1326 40 1 -0.4775 -6.7341 2.1386 41 1 -1.2909 -7.6677 0.0115 42 1 -1.6534 -8.5697 -5.4479 43 1 1.1221 -4.8621 -2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649801847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:28 Heat of formation + Delta-G solvation = -94.756387 kcal Electronic energy + Delta-G solvation = -25818.089188 eV Core-core repulsion = 21863.064127 eV Total energy + Delta-G solvation = -3955.025060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42841 -40.77254 -40.35342 -38.52186 -36.82653 -35.83621 -34.66219 -34.27681 -32.78514 -31.59476 -30.67962 -27.83727 -27.55152 -26.89917 -24.87386 -23.24529 -22.43216 -21.55631 -20.93688 -19.74643 -19.14956 -18.58057 -18.34749 -17.92742 -17.11033 -16.88933 -16.67731 -16.47713 -16.26343 -16.08820 -15.61551 -15.37337 -15.18428 -14.97520 -14.55442 -14.36585 -14.15343 -14.01585 -13.91401 -13.63311 -13.31918 -13.18806 -13.13666 -12.98868 -12.51908 -12.35202 -12.26172 -12.10903 -12.07028 -11.36653 -11.19257 -11.11240 -10.79861 -10.65594 -10.24647 -9.76056 -9.57224 -9.02191 -8.45925 -6.14117 0.37949 0.71775 1.36973 1.45170 1.53950 1.61561 1.66140 2.09226 2.18399 2.64032 2.82493 3.06141 3.22018 3.42163 3.83864 3.85659 4.00892 4.11198 4.15209 4.29943 4.32723 4.43960 4.54292 4.54499 4.62980 4.66923 4.74098 4.79834 4.91701 5.00605 5.03346 5.13279 5.27375 5.41917 5.48299 5.63762 5.72050 5.73636 5.88345 5.89432 6.03040 6.17853 6.43089 6.92013 6.99157 7.32712 7.51311 7.79373 8.77107 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.002204 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.642171 B =12699.482389 C =13556.595683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.629 5.629 3 C 0.150 3.850 4 C -0.152 4.152 5 C 0.522 3.478 6 N -0.838 5.838 7 O -0.592 6.592 8 C 0.699 3.301 9 O -0.632 6.632 10 N -0.728 5.728 11 C 0.192 3.808 12 C -0.058 4.058 13 C -0.168 4.168 14 C -0.070 4.070 15 C -0.233 4.233 16 C 0.112 3.888 17 O -0.231 6.231 18 C -0.411 4.411 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.017 2.983 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.253 1.253 26 C -0.178 4.178 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.418 0.582 35 H 0.407 0.593 36 H 0.408 0.592 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.272 0.728 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 17.885 7.434 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.365 5.365 3 C 0.026 3.974 4 C -0.193 4.193 5 C 0.307 3.693 6 N -0.402 5.402 7 O -0.473 6.473 8 C 0.401 3.599 9 O -0.514 6.514 10 N -0.385 5.385 11 C 0.068 3.932 12 C -0.059 4.059 13 C -0.187 4.187 14 C -0.087 4.087 15 C -0.253 4.253 16 C 0.062 3.938 17 O -0.138 6.138 18 C -0.487 4.487 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.836 3.164 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.176 1.176 26 C -0.198 4.198 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.249 0.751 35 H 0.239 0.761 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.303 18.087 7.731 19.805 hybrid contribution -0.670 -0.712 -0.969 1.377 sum 1.633 17.375 6.762 18.716 Atomic orbital electron populations 1.22028 0.77253 1.04588 1.03298 1.47060 1.07804 1.03916 1.77727 1.20966 0.97501 0.83401 0.95520 1.21986 1.02838 0.94321 1.00147 1.20735 0.78394 0.86454 0.83729 1.43755 1.60132 1.27810 1.08482 1.90745 1.56845 1.66653 1.33073 1.16071 0.84886 0.81228 0.77759 1.90891 1.13451 1.86953 1.60074 1.45222 1.10471 1.03680 1.79167 1.19866 0.91753 0.78974 1.02582 1.19423 0.97533 0.96705 0.92192 1.20991 1.01124 0.99165 0.97416 1.21151 0.95448 0.95107 0.97037 1.21371 1.06250 1.05066 0.92590 1.19847 0.93399 0.93874 0.86658 1.83947 1.60803 1.41947 1.27093 1.21813 1.27616 1.03793 0.95523 0.87919 1.26559 0.99545 1.02396 0.93549 1.70179 1.45398 1.41896 0.98410 0.84605 0.77434 0.75390 0.78929 1.18741 1.19898 1.17639 1.20206 1.01566 0.99431 0.98608 0.91174 0.88197 0.91012 0.88222 0.92184 0.88988 0.85649 0.75130 0.76131 0.75446 0.90014 0.92055 0.83628 0.83403 0.86154 0.91899 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 10.20 127.77 1.30 2.13 16 2 N -0.63 -12.25 2.87 -864.90 -2.48 -14.74 16 3 C 0.15 2.90 4.70 86.38 0.41 3.30 16 4 C -0.15 -2.26 6.02 29.85 0.18 -2.08 16 5 C 0.52 9.01 8.10 87.66 0.71 9.72 16 6 N -0.84 -7.68 8.87 -173.53 -1.54 -9.22 16 7 O -0.59 -15.65 16.82 -3.05 -0.05 -15.70 16 8 C 0.70 18.88 8.28 179.05 1.48 20.36 16 9 O -0.63 -22.30 15.92 -3.99 -0.06 -22.36 16 10 N -0.73 -17.94 5.42 -482.30 -2.61 -20.55 16 11 C 0.19 5.31 5.80 85.63 0.50 5.81 16 12 C -0.06 -1.80 5.25 -19.88 -0.10 -1.90 16 13 C -0.17 -4.70 9.70 22.30 0.22 -4.48 16 14 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 15 C -0.23 -9.38 9.17 22.39 0.21 -9.18 16 16 C 0.11 5.27 6.65 22.58 0.15 5.42 16 17 O -0.23 -13.38 9.76 -22.74 -0.22 -13.60 16 18 C -0.41 -23.09 9.49 67.92 0.64 -22.45 16 19 H 0.10 5.24 5.21 -2.91 -0.02 5.23 16 20 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 21 N -0.92 -55.31 13.67 21.61 0.30 -55.02 16 22 Si 1.02 41.57 29.55 68.60 2.03 43.59 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 26 C -0.18 -7.11 9.65 22.39 0.22 -6.89 16 27 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 29 H 0.07 0.86 6.36 -2.38 -0.02 0.85 16 30 H 0.10 1.60 8.03 -2.39 -0.02 1.58 16 31 H 0.06 1.58 7.38 -2.39 -0.02 1.57 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.42 1.40 8.83 -92.71 -0.82 0.58 16 35 H 0.41 3.10 8.93 -92.70 -0.83 2.27 16 36 H 0.41 8.59 6.19 -92.71 -0.57 8.01 16 37 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 38 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 39 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.12 4.94 5.64 -2.91 -0.02 4.92 16 42 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -81.70 370.45 0.80 -80.89 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -1.14 Total: 29.64 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 6.60 Total: -2.95 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -6.34 Total: -99.52 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.34 Total: -51.65 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -81.70 0.80 -80.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649801847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.865 kcal (2) G-P(sol) polarization free energy of solvation -81.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds