Wall clock time and date at job start Tue Mar 31 2020 13:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36014 * 116.99657 * 2 1 4 4 C 1.35845 * 120.31569 * 0.02562 * 3 2 1 5 5 N 1.35441 * 120.77745 * 180.02562 * 4 3 2 6 6 H 0.97000 * 119.30163 * 179.97438 * 5 4 3 7 7 C 1.36435 * 121.40917 * 359.97438 * 5 4 3 8 8 C 1.48074 * 119.71795 * 179.97438 * 7 5 4 9 9 O 1.21513 * 119.99824 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99861 * 359.97438 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72359 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08992 * 109.46993 * 295.00086 * 12 11 10 14 14 N 1.46506 * 109.46943 * 54.99919 * 12 11 10 15 15 C 1.36929 * 119.99909 * 205.00011 * 14 12 11 16 16 H 1.08006 * 120.00094 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99668 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47137 * 90.00133 * 19 17 15 21 21 H 1.48503 * 109.46884 * 210.00261 * 19 17 15 22 22 H 1.48502 * 109.47201 * 329.99762 * 19 17 15 23 23 C 1.52995 * 109.47195 * 174.99817 * 12 11 10 24 24 C 1.52999 * 117.50225 * 248.74775 * 23 12 11 25 25 C 1.52999 * 117.49761 * 180.08552 * 23 12 11 26 26 C 1.36171 * 120.55991 * 0.26050 * 7 5 4 27 27 C 1.41580 * 120.31404 * 180.02562 * 3 2 1 28 28 O 1.22272 * 120.65297 * 0.02562 * 27 3 2 29 29 H 1.09004 * 109.47390 * 59.99694 * 1 2 3 30 30 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47136 * 299.99646 * 1 2 3 32 32 H 1.07996 * 119.61583 * 0.02562 * 4 3 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 0.97002 * 119.99781 * 25.00223 * 14 12 11 37 37 H 0.96996 * 119.99816 * 180.02562 * 18 17 15 38 38 H 1.09006 * 115.55266 * 34.42181 * 23 12 11 39 39 H 1.08993 * 117.49781 * 359.97438 * 24 23 12 40 40 H 1.09000 * 117.50138 * 145.02405 * 24 23 12 41 41 H 1.09009 * 117.50018 * 214.98040 * 25 23 12 42 42 H 1.08999 * 117.50301 * 359.97438 * 25 23 12 43 43 H 1.07998 * 120.40552 * 179.72373 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3127 2.3552 0.0005 5 7 1.9178 3.5670 0.0000 6 1 1.3731 4.3696 0.0000 7 6 3.2772 3.6829 -0.0005 8 6 3.8994 5.0266 -0.0017 9 8 5.1096 5.1358 -0.0026 10 7 3.1233 6.1285 -0.0027 11 6 3.7388 7.4579 0.0023 12 6 2.6441 8.5268 0.0070 13 1 2.0804 8.4736 -0.9243 14 7 1.7416 8.2966 1.1379 15 6 0.4514 8.7526 1.0881 16 1 0.0989 9.2815 0.2149 17 6 -0.4035 8.5349 2.1599 18 7 0.0262 7.8908 3.2241 19 14 -2.1638 9.1563 2.0915 20 1 -3.0362 8.1083 1.5034 21 1 -2.6299 9.4750 3.4650 22 1 -2.2247 10.3797 1.2519 23 6 3.2831 9.9108 0.1380 24 6 3.0558 10.6731 1.4448 25 6 2.3477 11.1212 0.1638 26 6 4.0667 2.5734 -0.0059 27 6 3.4598 1.2939 -0.0005 28 8 4.1430 0.2798 -0.0015 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 0.2343 2.2974 0.0014 33 1 2.1572 6.0414 -0.0023 34 1 4.3581 7.5683 0.8926 35 1 4.3574 7.5753 -0.8874 36 1 2.0582 7.8213 1.9220 37 1 -0.5713 7.7384 3.9729 38 1 4.2486 10.0312 -0.3535 39 1 2.4505 10.1890 2.2112 40 1 3.8714 11.2955 1.8130 41 1 2.6979 12.0382 -0.3104 42 1 1.2771 10.9317 0.0870 43 1 5.1425 2.6681 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690160575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:10 Heat of formation + Delta-G solvation = -24.387483 kcal Electronic energy + Delta-G solvation = -26960.387629 eV Core-core repulsion = 23008.413993 eV Total energy + Delta-G solvation = -3951.973636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46464 -39.73784 -38.22468 -37.75519 -37.59138 -34.90495 -33.49459 -31.68279 -31.36385 -30.57964 -28.47188 -27.71045 -24.94086 -23.73724 -23.25649 -22.60255 -21.63882 -20.71175 -19.95149 -19.20343 -18.15619 -17.80798 -17.30423 -16.27437 -16.22201 -15.86539 -15.65292 -15.36516 -15.01317 -14.75781 -14.56437 -14.41445 -14.25915 -13.81140 -13.72243 -13.29321 -13.18893 -13.03313 -12.83610 -12.28753 -11.71920 -11.58232 -11.50748 -11.34938 -11.07040 -11.02003 -10.67700 -10.37051 -10.28388 -9.86836 -9.64431 -9.54711 -9.53206 -9.33664 -9.18826 -9.04522 -7.75543 -7.28973 -6.03750 -3.35269 0.61794 1.09792 2.49443 2.78682 2.89301 3.12400 3.22754 3.31332 3.33051 3.66623 4.28113 4.31766 4.45391 4.50461 4.56124 4.82264 4.93277 4.96243 5.14009 5.26681 5.27514 5.35160 5.41098 5.57235 5.65954 5.69083 5.77929 5.85089 5.86579 6.05952 6.15912 6.26961 6.37304 6.48241 6.50223 6.59302 6.62821 6.85362 7.06155 7.13855 7.39690 7.47165 7.96426 7.98407 8.12926 9.25670 9.77441 10.13755 11.17102 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.003658 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.352297 B = 7652.431714 C = 9555.529679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.289 6.289 3 C -0.038 4.038 4 C 0.036 3.964 5 N -0.558 5.558 6 H 0.425 0.575 7 C 0.131 3.869 8 C 0.554 3.446 9 O -0.514 6.514 10 N -0.703 5.703 11 C 0.117 3.883 12 C 0.191 3.809 13 H 0.059 0.941 14 N -0.719 5.719 15 C -0.246 4.246 16 H 0.073 0.927 17 C -0.005 4.005 18 N -0.927 5.927 19 Si 0.903 3.097 20 H -0.291 1.291 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.179 4.179 24 C -0.162 4.162 25 C -0.174 4.174 26 C -0.218 4.218 27 C 0.401 3.599 28 O -0.503 6.503 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.170 0.830 33 H 0.405 0.595 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 -5.212 -7.698 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.201 6.201 3 C -0.089 4.089 4 C -0.092 4.092 5 N -0.171 5.171 6 H 0.264 0.736 7 C 0.018 3.982 8 C 0.337 3.663 9 O -0.389 6.389 10 N -0.355 5.355 11 C -0.007 4.007 12 C 0.080 3.920 13 H 0.077 0.923 14 N -0.361 5.361 15 C -0.376 4.376 16 H 0.091 0.909 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.733 3.267 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.201 4.201 24 C -0.199 4.199 25 C -0.211 4.211 26 C -0.245 4.245 27 C 0.292 3.708 28 O -0.388 6.388 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.187 0.813 33 H 0.242 0.758 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.221 0.779 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.980 -5.811 -7.726 9.716 hybrid contribution -2.120 0.950 0.419 2.360 sum -1.140 -4.861 -7.307 8.850 Atomic orbital electron populations 1.23138 0.79168 1.04401 1.01112 1.86262 1.20317 1.24325 1.89186 1.20409 0.94799 0.84646 1.09071 1.21692 0.98937 0.84115 1.04475 1.40820 1.05219 1.08837 1.62265 0.73649 1.20450 0.82879 0.95827 0.99078 1.17891 0.87088 0.83045 0.78294 1.90832 1.12935 1.85885 1.49235 1.45939 1.10640 1.06039 1.72930 1.21755 0.96317 0.80237 1.02371 1.20016 0.89485 0.89409 0.93060 0.92302 1.42515 1.09114 1.67721 1.16782 1.19165 0.87033 1.30305 1.01120 0.90947 1.24718 0.98230 1.00853 0.96400 1.69647 1.35511 1.45636 1.06600 0.86276 0.84971 0.78495 0.76911 1.21793 1.21765 1.20678 1.23037 0.99366 0.94738 1.02917 1.22920 1.02186 1.02438 0.92402 1.22855 0.99554 0.96404 1.02329 1.22427 1.02217 0.90375 1.09475 1.16772 0.86082 0.89782 0.78200 1.90843 1.65731 1.37564 1.44661 0.92741 0.87997 0.92574 0.81254 0.75812 0.90864 0.90982 0.77929 0.93285 0.89477 0.86351 0.91177 0.90932 0.87928 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.29 -3.80 10.33 -35.61 -0.37 -4.17 16 3 C -0.04 -0.51 6.71 -39.17 -0.26 -0.77 16 4 C 0.04 0.35 10.22 -16.82 -0.17 0.18 16 5 N -0.56 -5.62 5.26 -9.58 -0.05 -5.68 16 6 H 0.43 3.56 7.00 -40.82 -0.29 3.28 16 7 C 0.13 1.66 6.77 -82.53 -0.56 1.10 16 8 C 0.55 7.77 7.80 -12.22 -0.10 7.68 16 9 O -0.51 -8.72 16.27 5.35 0.09 -8.64 16 10 N -0.70 -9.18 5.38 -61.17 -0.33 -9.51 16 11 C 0.12 1.63 5.22 -4.04 -0.02 1.61 16 12 C 0.19 2.97 2.86 -67.93 -0.19 2.78 16 13 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 14 N -0.72 -13.85 3.08 -53.42 -0.16 -14.01 16 15 C -0.25 -5.44 8.15 -15.06 -0.12 -5.56 16 16 H 0.07 1.60 6.91 -52.48 -0.36 1.23 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 18 N -0.93 -23.97 13.06 55.49 0.72 -23.25 16 19 Si 0.90 19.58 29.55 -169.99 -5.02 14.56 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.18 -2.74 5.70 -90.62 -0.52 -3.26 16 24 C -0.16 -2.76 9.74 -26.69 -0.26 -3.02 16 25 C -0.17 -2.81 9.87 -26.69 -0.26 -3.07 16 26 C -0.22 -3.13 9.53 -39.04 -0.37 -3.50 16 27 C 0.40 6.45 6.78 -37.02 -0.25 6.20 16 28 O -0.50 -9.94 17.71 -11.15 -0.20 -10.14 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.36 7.66 -51.92 -0.40 -0.04 16 32 H 0.17 1.08 6.21 -52.49 -0.33 0.76 16 33 H 0.41 4.95 6.35 -40.82 -0.26 4.69 16 34 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.39 8.30 7.80 -40.82 -0.32 7.99 16 37 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 39 H 0.12 2.43 6.68 -51.93 -0.35 2.09 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 42 H 0.10 1.86 6.22 -51.93 -0.32 1.54 16 43 H 0.17 2.44 7.58 -52.49 -0.40 2.04 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -30.56 361.91 -7.57 -38.13 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -5.50 Total: 15.97 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.19 Total: 1.27 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.18 Total: -52.45 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.48 Total: -22.94 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.56 -7.57 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690160575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.740 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds