Wall clock time and date at job start Tue Mar 31 2020 13:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36014 * 116.99657 * 2 1 4 4 C 1.35845 * 120.31569 * 0.02562 * 3 2 1 5 5 N 1.35441 * 120.77745 * 180.02562 * 4 3 2 6 6 H 0.97000 * 119.30163 * 179.97438 * 5 4 3 7 7 C 1.36435 * 121.40917 * 359.97438 * 5 4 3 8 8 C 1.48074 * 119.71795 * 179.97438 * 7 5 4 9 9 O 1.21513 * 119.99824 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99861 * 359.97438 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72359 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08992 * 109.46993 * 295.00086 * 12 11 10 14 14 N 1.46506 * 109.46943 * 54.99919 * 12 11 10 15 15 C 1.36929 * 119.99909 * 205.00011 * 14 12 11 16 16 H 1.08006 * 120.00094 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99668 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47137 * 90.00133 * 19 17 15 21 21 H 1.48503 * 109.46884 * 210.00261 * 19 17 15 22 22 H 1.48502 * 109.47201 * 329.99762 * 19 17 15 23 23 C 1.52995 * 109.47195 * 174.99817 * 12 11 10 24 24 C 1.52999 * 117.50225 * 248.74775 * 23 12 11 25 25 C 1.52999 * 117.49761 * 180.08552 * 23 12 11 26 26 C 1.36171 * 120.55991 * 0.26050 * 7 5 4 27 27 C 1.41580 * 120.31404 * 180.02562 * 3 2 1 28 28 O 1.22272 * 120.65297 * 0.02562 * 27 3 2 29 29 H 1.09004 * 109.47390 * 59.99694 * 1 2 3 30 30 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47136 * 299.99646 * 1 2 3 32 32 H 1.07996 * 119.61583 * 0.02562 * 4 3 2 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 0.97002 * 119.99781 * 25.00223 * 14 12 11 37 37 H 0.96996 * 119.99816 * 180.02562 * 18 17 15 38 38 H 1.09006 * 115.55266 * 34.42181 * 23 12 11 39 39 H 1.08993 * 117.49781 * 359.97438 * 24 23 12 40 40 H 1.09000 * 117.50138 * 145.02405 * 24 23 12 41 41 H 1.09009 * 117.50018 * 214.98040 * 25 23 12 42 42 H 1.08999 * 117.50301 * 359.97438 * 25 23 12 43 43 H 1.07998 * 120.40552 * 179.72373 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3127 2.3552 0.0005 5 7 1.9178 3.5670 0.0000 6 1 1.3731 4.3696 0.0000 7 6 3.2772 3.6829 -0.0005 8 6 3.8994 5.0266 -0.0017 9 8 5.1096 5.1358 -0.0026 10 7 3.1233 6.1285 -0.0027 11 6 3.7388 7.4579 0.0023 12 6 2.6441 8.5268 0.0070 13 1 2.0804 8.4736 -0.9243 14 7 1.7416 8.2966 1.1379 15 6 0.4514 8.7526 1.0881 16 1 0.0989 9.2815 0.2149 17 6 -0.4035 8.5349 2.1599 18 7 0.0262 7.8908 3.2241 19 14 -2.1638 9.1563 2.0915 20 1 -3.0362 8.1083 1.5034 21 1 -2.6299 9.4750 3.4650 22 1 -2.2247 10.3797 1.2519 23 6 3.2831 9.9108 0.1380 24 6 3.0558 10.6731 1.4448 25 6 2.3477 11.1212 0.1638 26 6 4.0667 2.5734 -0.0059 27 6 3.4598 1.2939 -0.0005 28 8 4.1430 0.2798 -0.0015 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 0.2343 2.2974 0.0014 33 1 2.1572 6.0414 -0.0023 34 1 4.3581 7.5683 0.8926 35 1 4.3574 7.5753 -0.8874 36 1 2.0582 7.8213 1.9220 37 1 -0.5713 7.7384 3.9729 38 1 4.2486 10.0312 -0.3535 39 1 2.4505 10.1890 2.2112 40 1 3.8714 11.2955 1.8130 41 1 2.6979 12.0382 -0.3104 42 1 1.2771 10.9317 0.0870 43 1 5.1425 2.6681 -0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690160575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:10 Heat of formation + Delta-G solvation = -45.229666 kcal Electronic energy + Delta-G solvation = -26961.291414 eV Core-core repulsion = 23008.413993 eV Total energy + Delta-G solvation = -3952.877421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52229 -40.86426 -39.31677 -38.94433 -38.76487 -36.13073 -35.10713 -32.86856 -32.68232 -31.77275 -29.83786 -28.42007 -26.18692 -25.28329 -24.30756 -23.79394 -22.94387 -21.88105 -21.02170 -20.41740 -19.37017 -19.01680 -18.64652 -17.32979 -17.20409 -17.05921 -16.87547 -16.46438 -16.31686 -16.16317 -15.62552 -15.47366 -15.46200 -15.12786 -14.95164 -14.60539 -14.46126 -14.24219 -13.83240 -13.68761 -12.94606 -12.84071 -12.65833 -12.58313 -12.40846 -12.28487 -12.11747 -11.93638 -11.63499 -11.53233 -11.00744 -10.86669 -10.72248 -10.60059 -10.56746 -10.19389 -8.97993 -8.79670 -7.86745 -5.14089 -0.51238 0.11315 1.48841 1.50440 1.56553 1.60141 1.63954 1.78132 2.29986 2.55847 2.60357 3.15430 3.34579 3.49340 3.52727 3.63621 3.82223 3.88557 3.99560 4.28840 4.33501 4.37274 4.43049 4.44984 4.51701 4.56736 4.61023 4.69500 4.80116 4.91640 5.00599 5.00928 5.15144 5.22143 5.33152 5.42859 5.50379 5.70645 5.71221 5.71712 6.22343 6.29123 6.33204 6.83709 6.88835 7.43155 8.12510 8.38015 9.34865 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012260 B = 0.003658 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.352297 B = 7652.431714 C = 9555.529679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.321 6.321 3 C -0.060 4.060 4 C 0.070 3.930 5 N -0.536 5.536 6 H 0.439 0.561 7 C 0.145 3.855 8 C 0.559 3.441 9 O -0.543 6.543 10 N -0.693 5.693 11 C 0.124 3.876 12 C 0.192 3.808 13 H 0.070 0.930 14 N -0.721 5.721 15 C -0.217 4.217 16 H 0.078 0.922 17 C -0.058 4.058 18 N -0.961 5.961 19 Si 0.950 3.050 20 H -0.286 1.286 21 H -0.311 1.311 22 H -0.277 1.277 23 C -0.166 4.166 24 C -0.176 4.176 25 C -0.172 4.172 26 C -0.231 4.231 27 C 0.382 3.618 28 O -0.566 6.566 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.218 0.782 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.375 0.625 37 H 0.246 0.754 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 -3.759 -9.410 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.234 6.234 3 C -0.110 4.110 4 C -0.059 4.059 5 N -0.148 5.148 6 H 0.280 0.720 7 C 0.030 3.970 8 C 0.343 3.657 9 O -0.420 6.420 10 N -0.345 5.345 11 C 0.000 4.000 12 C 0.083 3.917 13 H 0.088 0.912 14 N -0.361 5.361 15 C -0.348 4.348 16 H 0.096 0.904 17 C -0.251 4.251 18 N -0.612 5.612 19 Si 0.782 3.218 20 H -0.214 1.214 21 H -0.239 1.239 22 H -0.203 1.203 23 C -0.188 4.188 24 C -0.213 4.213 25 C -0.209 4.209 26 C -0.258 4.258 27 C 0.277 3.723 28 O -0.457 6.457 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.234 0.766 33 H 0.249 0.751 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.208 0.792 37 H 0.055 0.945 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.510 -4.290 -9.491 10.428 hybrid contribution -1.723 0.643 0.896 2.046 sum -2.233 -3.646 -8.596 9.601 Atomic orbital electron populations 1.23502 0.76401 1.06088 1.02865 1.86224 1.23225 1.24419 1.89496 1.20184 0.93828 0.86083 1.10904 1.22240 1.00571 0.82521 1.00568 1.40952 1.04414 1.09843 1.59627 0.72006 1.20139 0.83766 0.94593 0.98526 1.17917 0.86666 0.83405 0.77720 1.90828 1.14299 1.86262 1.50619 1.45824 1.10838 1.05617 1.72214 1.21676 0.95674 0.79824 1.02812 1.20171 0.89450 0.90230 0.91890 0.91229 1.42567 1.08812 1.67277 1.17433 1.19391 0.87714 1.27514 1.00210 0.90440 1.25185 1.00693 1.02484 0.96771 1.69768 1.35947 1.48239 1.07218 0.85502 0.82531 0.78215 0.75583 1.21363 1.23915 1.20284 1.23074 1.00299 0.93894 1.01489 1.22777 1.02725 1.03644 0.92159 1.22838 0.98407 0.97917 1.01688 1.22260 1.02089 0.90593 1.10858 1.17216 0.87682 0.89503 0.77862 1.90800 1.67067 1.39034 1.48786 0.90460 0.86716 0.91018 0.76589 0.75065 0.92048 0.88949 0.79207 0.94460 0.86634 0.90271 0.89499 0.88438 0.90157 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -8.20 10.33 -78.58 -0.81 -9.01 16 3 C -0.06 -1.54 6.71 22.54 0.15 -1.39 16 4 C 0.07 1.16 10.22 83.58 0.85 2.01 16 5 N -0.54 -9.20 5.26 -184.22 -0.97 -10.17 16 6 H 0.44 5.60 7.00 -92.71 -0.65 4.95 16 7 C 0.14 3.48 6.77 40.56 0.27 3.75 16 8 C 0.56 14.83 7.80 86.85 0.68 15.51 16 9 O -0.54 -18.01 16.27 -3.76 -0.06 -18.08 16 10 N -0.69 -16.35 5.38 -465.75 -2.51 -18.86 16 11 C 0.12 3.11 5.22 86.38 0.45 3.56 16 12 C 0.19 5.40 2.86 44.99 0.13 5.53 16 13 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 14 N -0.72 -26.51 3.08 -322.94 -0.99 -27.51 16 15 C -0.22 -9.22 8.15 84.04 0.69 -8.54 16 16 H 0.08 3.22 6.91 -2.91 -0.02 3.20 16 17 C -0.06 -2.75 5.50 84.86 0.47 -2.29 16 18 N -0.96 -49.79 13.06 21.65 0.28 -49.51 16 19 Si 0.95 39.73 29.55 68.60 2.03 41.76 16 20 H -0.29 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.31 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 23 C -0.17 -4.55 5.70 -10.80 -0.06 -4.62 16 24 C -0.18 -5.65 9.74 30.62 0.30 -5.35 16 25 C -0.17 -5.04 9.87 30.62 0.30 -4.74 16 26 C -0.23 -6.80 9.53 22.62 0.22 -6.59 16 27 C 0.38 12.77 6.78 23.93 0.16 12.93 16 28 O -0.57 -24.05 17.71 8.92 0.16 -23.90 16 29 H 0.08 0.61 7.66 -2.39 -0.02 0.59 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 0.67 7.66 -2.38 -0.02 0.66 16 32 H 0.22 1.59 6.21 -2.91 -0.02 1.57 16 33 H 0.41 8.76 6.35 -92.71 -0.59 8.17 16 34 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.38 15.77 7.80 -92.71 -0.72 15.05 16 37 H 0.25 12.89 8.31 -92.71 -0.77 12.12 16 38 H 0.12 2.60 8.11 -2.38 -0.02 2.58 16 39 H 0.08 3.23 6.68 -2.39 -0.02 3.22 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.08 2.74 6.22 -2.39 -0.01 2.72 16 43 H 0.16 4.86 7.58 -2.91 -0.02 4.84 16 Total: -1.00 -69.80 361.91 1.97 -67.83 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.87 Total: 36.48 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.72 Total: 10.96 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -4.19 Total: -106.04 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.71 Total: -50.98 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -69.80 1.97 -67.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690160575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.598 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds