Wall clock time and date at job start Tue Mar 31 2020 13:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.35857 * 120.31154 * 359.97438 * 3 2 1 5 5 N 1.35445 * 120.77301 * 180.02562 * 4 3 2 6 6 H 0.97004 * 119.29050 * 179.97438 * 5 4 3 7 7 C 1.36423 * 121.41170 * 0.02562 * 5 4 3 8 8 C 1.48073 * 119.71848 * 179.97438 * 7 5 4 9 9 O 1.21509 * 120.00368 * 180.02562 * 8 7 5 10 10 N 1.34777 * 120.00039 * 0.02562 * 8 7 5 11 11 C 1.46501 * 120.00155 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47173 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47334 * 64.99982 * 12 11 10 14 14 N 1.46496 * 109.46784 * 304.99861 * 12 11 10 15 15 C 1.36946 * 120.00121 * 155.00438 * 14 12 11 16 16 H 1.08000 * 119.99478 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00209 * 180.02562 * 15 14 12 18 18 N 1.31622 * 120.00207 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00112 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47294 * 59.99162 * 19 17 15 21 21 H 1.48501 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47029 * 299.99670 * 19 17 15 23 23 C 1.52998 * 109.47054 * 185.00257 * 12 11 10 24 24 C 1.53002 * 117.49424 * 248.74397 * 23 12 11 25 25 C 1.53003 * 117.49918 * 180.08548 * 23 12 11 26 26 C 1.36180 * 120.56477 * 359.96356 * 7 5 4 27 27 C 1.41572 * 120.31450 * 179.72293 * 3 2 1 28 28 O 1.22254 * 120.65694 * 359.97377 * 27 3 2 29 29 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 30 30 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 32 32 H 1.08000 * 119.61141 * 0.02562 * 4 3 2 33 33 H 0.97001 * 120.00220 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46791 * 300.00161 * 11 10 8 35 35 H 1.08995 * 109.47255 * 60.00229 * 11 10 8 36 36 H 0.96998 * 120.00580 * 335.00446 * 14 12 11 37 37 H 0.96994 * 120.00093 * 180.02562 * 18 17 15 38 38 H 1.08996 * 115.55088 * 34.41210 * 23 12 11 39 39 H 1.08998 * 117.50526 * 359.97438 * 24 23 12 40 40 H 1.09005 * 117.49515 * 145.02535 * 24 23 12 41 41 H 1.09000 * 117.49875 * 214.97681 * 25 23 12 42 42 H 1.09001 * 117.49897 * 359.97438 * 25 23 12 43 43 H 1.07998 * 120.40755 * 179.97438 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3128 2.3552 -0.0005 5 7 1.9179 3.5670 -0.0010 6 1 1.3731 4.3696 -0.0018 7 6 3.2772 3.6829 -0.0016 8 6 3.8994 5.0266 -0.0027 9 8 5.1096 5.1358 -0.0037 10 7 3.1234 6.1285 -0.0027 11 6 3.7389 7.4579 -0.0033 12 6 2.6441 8.5268 -0.0025 13 1 2.0814 8.4700 0.9294 14 7 1.7405 8.3010 -1.1332 15 6 0.4502 8.7568 -1.0802 16 1 0.0988 9.2824 -0.2045 17 6 -0.4062 8.5424 -2.1513 18 7 0.0219 7.9015 -3.2182 19 14 -2.1660 9.1647 -2.0793 20 1 -2.1628 10.6403 -1.9121 21 1 -2.8681 8.8112 -3.3391 22 1 -2.8660 8.5379 -0.9293 23 6 3.2830 9.9113 -0.1288 24 6 3.2100 10.8366 1.0875 25 6 2.3479 11.1221 -0.1448 26 6 4.0668 2.5734 -0.0009 27 6 3.4599 1.2937 0.0059 28 8 4.1430 0.2799 0.0116 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2343 2.2973 -0.0005 33 1 2.1573 6.0414 -0.0016 34 1 4.3582 7.5719 0.8865 35 1 4.3574 7.5716 -0.8935 36 1 2.0560 7.8287 -1.9195 37 1 -0.5764 7.7520 -3.9669 38 1 4.1805 9.9603 -0.7454 39 1 2.7065 10.4593 1.9775 40 1 4.0593 11.4948 1.2707 41 1 2.6303 11.9680 -0.7716 42 1 1.2774 10.9324 -0.0657 43 1 5.1427 2.6681 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690160576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:13 Heat of formation + Delta-G solvation = -27.443971 kcal Electronic energy + Delta-G solvation = -26835.066676 eV Core-core repulsion = 22882.960501 eV Total energy + Delta-G solvation = -3952.106175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46490 -39.73703 -38.20780 -37.71109 -37.58073 -35.03722 -33.67179 -31.68487 -31.39791 -30.61788 -28.38984 -27.69616 -24.93739 -23.70150 -23.22596 -22.41331 -21.82539 -20.74959 -20.07505 -19.53849 -18.20766 -17.82177 -17.27812 -16.27380 -16.22004 -15.86673 -15.55676 -15.36485 -15.12190 -14.68487 -14.53661 -14.44641 -14.24912 -13.91207 -13.68174 -13.34072 -13.21468 -13.10892 -12.83529 -12.34050 -11.71732 -11.56866 -11.55483 -11.36040 -11.04505 -11.00813 -10.91321 -10.39245 -10.32062 -10.09973 -9.71906 -9.55782 -9.53406 -9.46708 -9.17699 -9.05655 -7.75460 -7.26918 -6.01521 -3.32630 0.61779 1.09810 2.49468 2.78673 2.88768 3.12418 3.24130 3.31065 3.33035 3.66637 4.24352 4.28697 4.42561 4.47790 4.56077 4.82151 4.93347 4.96241 5.00750 5.26120 5.27778 5.33606 5.40678 5.43782 5.54714 5.65810 5.69770 5.79311 5.88028 6.02428 6.05773 6.12950 6.28669 6.42815 6.44358 6.55622 6.59496 6.61549 6.81847 7.06193 7.39359 7.45999 7.96220 7.98362 8.14909 9.27358 9.79518 10.15701 11.19591 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003661 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.922703 B = 7645.571061 C = 9613.763908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.289 6.289 3 C -0.038 4.038 4 C 0.035 3.965 5 N -0.558 5.558 6 H 0.425 0.575 7 C 0.131 3.869 8 C 0.554 3.446 9 O -0.514 6.514 10 N -0.704 5.704 11 C 0.117 3.883 12 C 0.192 3.808 13 H 0.057 0.943 14 N -0.718 5.718 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.006 4.006 18 N -0.928 5.928 19 Si 0.903 3.097 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.160 4.160 24 C -0.195 4.195 25 C -0.155 4.155 26 C -0.218 4.218 27 C 0.401 3.599 28 O -0.503 6.503 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.171 0.829 33 H 0.405 0.595 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.385 0.615 37 H 0.258 0.742 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 -5.150 8.314 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.201 6.201 3 C -0.089 4.089 4 C -0.092 4.092 5 N -0.171 5.171 6 H 0.264 0.736 7 C 0.018 3.982 8 C 0.337 3.663 9 O -0.389 6.389 10 N -0.356 5.356 11 C -0.007 4.007 12 C 0.082 3.918 13 H 0.075 0.925 14 N -0.360 5.360 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.734 3.266 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.182 4.182 24 C -0.233 4.233 25 C -0.192 4.192 26 C -0.245 4.245 27 C 0.292 3.708 28 O -0.388 6.388 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.188 0.812 33 H 0.242 0.758 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.070 -5.768 8.328 10.187 hybrid contribution -2.121 0.987 -0.504 2.393 sum -1.050 -4.781 7.824 9.229 Atomic orbital electron populations 1.23139 0.79165 1.04403 1.01114 1.86262 1.20319 1.24327 1.89184 1.20411 0.94800 0.84645 1.09070 1.21698 0.98940 0.84111 1.04476 1.40820 1.05220 1.08846 1.62260 0.73644 1.20445 0.82883 0.95814 0.99101 1.17890 0.87086 0.83042 0.78290 1.90831 1.12930 1.85881 1.49228 1.45931 1.10660 1.06028 1.72952 1.21769 0.96264 0.80234 1.02432 1.20078 0.89441 0.89173 0.93155 0.92503 1.42492 1.08950 1.67776 1.16751 1.19113 0.86915 1.30515 1.00940 0.91085 1.24725 0.98281 1.00913 0.96361 1.69640 1.35622 1.45737 1.06487 0.86350 0.84750 0.78778 0.76741 1.21140 1.21698 1.21290 1.23001 1.00995 0.93942 1.00288 1.22973 1.02967 1.04488 0.92900 1.22785 0.98809 0.98492 0.99137 1.22434 1.02216 0.90371 1.09463 1.16768 0.86081 0.89778 0.78204 1.90838 1.65728 1.37567 1.44652 0.92568 0.87997 0.92740 0.81243 0.75795 0.90790 0.90966 0.78049 0.93251 0.88998 0.89508 0.89977 0.90146 0.87712 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.29 -3.80 10.33 -35.59 -0.37 -4.16 16 3 C -0.04 -0.51 6.71 -39.16 -0.26 -0.77 16 4 C 0.04 0.35 10.22 -16.81 -0.17 0.18 16 5 N -0.56 -5.64 5.26 -9.57 -0.05 -5.69 16 6 H 0.43 3.58 7.00 -40.82 -0.29 3.30 16 7 C 0.13 1.66 6.77 -82.53 -0.56 1.10 16 8 C 0.55 7.80 7.80 -12.23 -0.10 7.70 16 9 O -0.51 -8.72 16.27 5.36 0.09 -8.63 16 10 N -0.70 -9.26 5.38 -61.18 -0.33 -9.59 16 11 C 0.12 1.64 5.22 -4.04 -0.02 1.62 16 12 C 0.19 3.02 2.70 -67.93 -0.18 2.83 16 13 H 0.06 0.89 7.84 -51.93 -0.41 0.49 16 14 N -0.72 -14.27 4.54 -53.43 -0.24 -14.52 16 15 C -0.24 -5.53 8.63 -15.06 -0.13 -5.66 16 16 H 0.07 1.58 6.91 -52.49 -0.36 1.22 16 17 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 18 N -0.93 -24.47 13.06 55.49 0.72 -23.74 16 19 Si 0.90 19.73 29.55 -169.99 -5.02 14.71 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.16 -2.45 5.36 -90.62 -0.49 -2.94 16 24 C -0.20 -2.62 10.18 -26.69 -0.27 -2.89 16 25 C -0.16 -2.48 9.78 -26.69 -0.26 -2.74 16 26 C -0.22 -3.13 9.53 -39.03 -0.37 -3.50 16 27 C 0.40 6.45 6.78 -37.02 -0.25 6.20 16 28 O -0.50 -9.93 17.71 -11.14 -0.20 -10.13 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.17 1.08 6.21 -52.49 -0.33 0.76 16 33 H 0.41 5.01 6.35 -40.82 -0.26 4.75 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.39 8.51 7.80 -40.82 -0.32 8.19 16 37 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.09 1.39 8.11 -51.93 -0.42 0.96 16 39 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.10 1.89 6.23 -51.93 -0.32 1.56 16 43 H 0.17 2.44 7.58 -52.49 -0.40 2.04 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -31.35 364.82 -7.63 -38.98 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -5.56 Total: 15.26 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.17 Total: 2.02 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.10 Total: -53.54 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.48 Total: -22.93 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.35 -7.63 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690160576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.540 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds