Wall clock time and date at job start Tue Mar 31 2020 13:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.35857 * 120.31154 * 359.97438 * 3 2 1 5 5 N 1.35445 * 120.77301 * 180.02562 * 4 3 2 6 6 H 0.97004 * 119.29050 * 179.97438 * 5 4 3 7 7 C 1.36423 * 121.41170 * 0.02562 * 5 4 3 8 8 C 1.48073 * 119.71848 * 179.97438 * 7 5 4 9 9 O 1.21509 * 120.00368 * 180.02562 * 8 7 5 10 10 N 1.34777 * 120.00039 * 0.02562 * 8 7 5 11 11 C 1.46501 * 120.00155 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47173 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47334 * 64.99982 * 12 11 10 14 14 N 1.46496 * 109.46784 * 304.99861 * 12 11 10 15 15 C 1.36946 * 120.00121 * 155.00438 * 14 12 11 16 16 H 1.08000 * 119.99478 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00209 * 180.02562 * 15 14 12 18 18 N 1.31622 * 120.00207 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00112 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47294 * 59.99162 * 19 17 15 21 21 H 1.48501 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47029 * 299.99670 * 19 17 15 23 23 C 1.52998 * 109.47054 * 185.00257 * 12 11 10 24 24 C 1.53002 * 117.49424 * 248.74397 * 23 12 11 25 25 C 1.53003 * 117.49918 * 180.08548 * 23 12 11 26 26 C 1.36180 * 120.56477 * 359.96356 * 7 5 4 27 27 C 1.41572 * 120.31450 * 179.72293 * 3 2 1 28 28 O 1.22254 * 120.65694 * 359.97377 * 27 3 2 29 29 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 30 30 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 32 32 H 1.08000 * 119.61141 * 0.02562 * 4 3 2 33 33 H 0.97001 * 120.00220 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46791 * 300.00161 * 11 10 8 35 35 H 1.08995 * 109.47255 * 60.00229 * 11 10 8 36 36 H 0.96998 * 120.00580 * 335.00446 * 14 12 11 37 37 H 0.96994 * 120.00093 * 180.02562 * 18 17 15 38 38 H 1.08996 * 115.55088 * 34.41210 * 23 12 11 39 39 H 1.08998 * 117.50526 * 359.97438 * 24 23 12 40 40 H 1.09005 * 117.49515 * 145.02535 * 24 23 12 41 41 H 1.09000 * 117.49875 * 214.97681 * 25 23 12 42 42 H 1.09001 * 117.49897 * 359.97438 * 25 23 12 43 43 H 1.07998 * 120.40755 * 179.97438 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3128 2.3552 -0.0005 5 7 1.9179 3.5670 -0.0010 6 1 1.3731 4.3696 -0.0018 7 6 3.2772 3.6829 -0.0016 8 6 3.8994 5.0266 -0.0027 9 8 5.1096 5.1358 -0.0037 10 7 3.1234 6.1285 -0.0027 11 6 3.7389 7.4579 -0.0033 12 6 2.6441 8.5268 -0.0025 13 1 2.0814 8.4700 0.9294 14 7 1.7405 8.3010 -1.1332 15 6 0.4502 8.7568 -1.0802 16 1 0.0988 9.2824 -0.2045 17 6 -0.4062 8.5424 -2.1513 18 7 0.0219 7.9015 -3.2182 19 14 -2.1660 9.1647 -2.0793 20 1 -2.1628 10.6403 -1.9121 21 1 -2.8681 8.8112 -3.3391 22 1 -2.8660 8.5379 -0.9293 23 6 3.2830 9.9113 -0.1288 24 6 3.2100 10.8366 1.0875 25 6 2.3479 11.1221 -0.1448 26 6 4.0668 2.5734 -0.0009 27 6 3.4599 1.2937 0.0059 28 8 4.1430 0.2799 0.0116 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2343 2.2973 -0.0005 33 1 2.1573 6.0414 -0.0016 34 1 4.3582 7.5719 0.8865 35 1 4.3574 7.5716 -0.8935 36 1 2.0560 7.8287 -1.9195 37 1 -0.5764 7.7520 -3.9669 38 1 4.1805 9.9603 -0.7454 39 1 2.7065 10.4593 1.9775 40 1 4.0593 11.4948 1.2707 41 1 2.6303 11.9680 -0.7716 42 1 1.2774 10.9324 -0.0657 43 1 5.1427 2.6681 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690160576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:13 Heat of formation + Delta-G solvation = -49.289975 kcal Electronic energy + Delta-G solvation = -26836.013990 eV Core-core repulsion = 22882.960501 eV Total energy + Delta-G solvation = -3953.053489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.52478 -40.86504 -39.24141 -38.89842 -38.76037 -36.26261 -35.25317 -32.93011 -32.70518 -31.79313 -29.75103 -28.41476 -26.20333 -25.21076 -24.26499 -23.62528 -22.98939 -21.93141 -21.22145 -20.65091 -19.42380 -19.00647 -18.63382 -17.33009 -17.19991 -17.06071 -16.83385 -16.46963 -16.39873 -15.95321 -15.61428 -15.57999 -15.39408 -15.12462 -14.90439 -14.82550 -14.43510 -14.27482 -13.83064 -13.69098 -12.95453 -12.89618 -12.65496 -12.42950 -12.40097 -12.28583 -12.23515 -12.00985 -11.72570 -11.60008 -10.97408 -10.90379 -10.76897 -10.70804 -10.57536 -10.20731 -8.98252 -8.79619 -7.86596 -5.14160 -0.51546 0.11302 1.48588 1.51948 1.56450 1.59620 1.63463 1.77066 2.29986 2.55733 2.59942 3.10436 3.33467 3.50879 3.53419 3.63271 3.77075 3.84202 4.01313 4.18792 4.33426 4.37904 4.42081 4.42908 4.45260 4.53582 4.61342 4.68813 4.80210 4.86619 4.94279 5.00146 5.07377 5.19697 5.29984 5.42901 5.43822 5.51788 5.66274 5.71466 6.22206 6.28358 6.32722 6.82737 6.88795 7.42550 8.12223 8.37740 9.35163 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003661 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.922703 B = 7645.571061 C = 9613.763908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.321 6.321 3 C -0.060 4.060 4 C 0.070 3.930 5 N -0.536 5.536 6 H 0.439 0.561 7 C 0.145 3.855 8 C 0.559 3.441 9 O -0.543 6.543 10 N -0.694 5.694 11 C 0.124 3.876 12 C 0.196 3.804 13 H 0.066 0.934 14 N -0.723 5.723 15 C -0.218 4.218 16 H 0.078 0.922 17 C -0.061 4.061 18 N -0.963 5.963 19 Si 0.953 3.047 20 H -0.290 1.290 21 H -0.307 1.307 22 H -0.274 1.274 23 C -0.172 4.172 24 C -0.163 4.163 25 C -0.176 4.176 26 C -0.230 4.230 27 C 0.382 3.618 28 O -0.566 6.566 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.412 0.588 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.374 0.626 37 H 0.247 0.753 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -3.763 10.012 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.234 6.234 3 C -0.110 4.110 4 C -0.059 4.059 5 N -0.149 5.149 6 H 0.280 0.720 7 C 0.030 3.970 8 C 0.343 3.657 9 O -0.420 6.420 10 N -0.345 5.345 11 C 0.000 4.000 12 C 0.087 3.913 13 H 0.084 0.916 14 N -0.363 5.363 15 C -0.350 4.350 16 H 0.096 0.904 17 C -0.254 4.254 18 N -0.614 5.614 19 Si 0.784 3.216 20 H -0.217 1.217 21 H -0.234 1.234 22 H -0.200 1.200 23 C -0.193 4.193 24 C -0.201 4.201 25 C -0.213 4.213 26 C -0.258 4.258 27 C 0.278 3.722 28 O -0.457 6.457 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.234 0.766 33 H 0.249 0.751 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.624 -4.312 10.083 10.985 hybrid contribution -1.649 0.703 -0.961 2.034 sum -2.273 -3.610 9.123 10.071 Atomic orbital electron populations 1.23504 0.76390 1.06093 1.02874 1.86224 1.23233 1.24411 1.89491 1.20184 0.93824 0.86086 1.10896 1.22251 1.00582 0.82503 1.00564 1.40952 1.04406 1.09860 1.59633 0.72012 1.20126 0.83780 0.94551 0.98584 1.17924 0.86666 0.83409 0.77704 1.90827 1.14297 1.86262 1.50604 1.45820 1.10851 1.05606 1.72260 1.21686 0.95664 0.79855 1.02807 1.20186 0.89275 0.90001 0.91797 0.91567 1.42593 1.08799 1.67453 1.17451 1.19391 0.87644 1.27751 1.00197 0.90389 1.25240 1.00981 1.02511 0.96705 1.69771 1.36145 1.48365 1.07134 0.85533 0.81997 0.77914 0.76145 1.21667 1.23446 1.20004 1.22943 1.00872 0.93316 1.02218 1.23039 1.02346 1.02718 0.91968 1.22732 0.97820 0.99064 1.01723 1.22269 1.02087 0.90592 1.10822 1.17208 0.87683 0.89488 0.77865 1.90795 1.67063 1.39029 1.48764 0.91001 0.86714 0.90457 0.76553 0.75062 0.89009 0.92051 0.79377 0.94415 0.88852 0.88299 0.87907 0.90037 0.89921 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -8.19 10.33 -78.51 -0.81 -9.00 16 3 C -0.06 -1.54 6.71 22.54 0.15 -1.38 16 4 C 0.07 1.16 10.22 83.58 0.85 2.01 16 5 N -0.54 -9.26 5.26 -184.21 -0.97 -10.23 16 6 H 0.44 5.66 7.00 -92.71 -0.65 5.01 16 7 C 0.14 3.49 6.77 40.56 0.27 3.77 16 8 C 0.56 14.98 7.80 86.85 0.68 15.65 16 9 O -0.54 -18.13 16.27 -3.74 -0.06 -18.20 16 10 N -0.69 -16.67 5.38 -465.77 -2.51 -19.18 16 11 C 0.12 3.18 5.22 86.38 0.45 3.63 16 12 C 0.20 5.66 2.70 44.99 0.12 5.78 16 13 H 0.07 1.83 7.84 -2.38 -0.02 1.82 16 14 N -0.72 -27.46 4.54 -322.94 -1.47 -28.92 16 15 C -0.22 -9.48 8.63 84.03 0.73 -8.76 16 16 H 0.08 3.27 6.91 -2.91 -0.02 3.25 16 17 C -0.06 -2.95 5.50 84.86 0.47 -2.48 16 18 N -0.96 -50.66 13.06 21.65 0.28 -50.37 16 19 Si 0.95 39.88 29.55 68.60 2.03 41.91 16 20 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.31 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 C -0.17 -4.82 5.36 -10.79 -0.06 -4.88 16 24 C -0.16 -3.77 10.18 30.62 0.31 -3.46 16 25 C -0.18 -5.26 9.78 30.62 0.30 -4.96 16 26 C -0.23 -6.81 9.53 22.63 0.22 -6.59 16 27 C 0.38 12.78 6.78 23.93 0.16 12.94 16 28 O -0.57 -24.03 17.71 8.98 0.16 -23.87 16 29 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 30 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.08 0.61 7.66 -2.39 -0.02 0.59 16 32 H 0.22 1.58 6.21 -2.91 -0.02 1.56 16 33 H 0.41 8.95 6.35 -92.71 -0.59 8.36 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.37 16.10 7.80 -92.71 -0.72 15.37 16 37 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 38 H 0.09 2.61 8.11 -2.39 -0.02 2.59 16 39 H 0.10 2.08 8.05 -2.39 -0.02 2.06 16 40 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.08 2.84 6.23 -2.39 -0.01 2.82 16 43 H 0.16 4.87 7.58 -2.91 -0.02 4.85 16 Total: -1.00 -70.86 364.82 1.54 -69.32 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.88 Total: 36.09 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 5.76 Total: 12.45 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -4.66 Total: -108.70 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.71 Total: -51.07 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -70.86 1.54 -69.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690160576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.028 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds