Wall clock time and date at job start Tue Mar 31 2020 13:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35529 * 117.00051 * 2 1 4 4 C 1.38823 * 120.89223 * 0.24955 * 3 2 1 5 5 C 1.38711 * 119.19609 * 180.26788 * 4 3 2 6 6 O 1.35521 * 119.47148 * 179.75323 * 5 4 3 7 7 N 1.32586 * 121.05502 * 359.46911 * 5 4 3 8 8 C 1.31618 * 121.97964 * 0.26312 * 7 5 4 9 9 C 1.39544 * 120.66186 * 0.02562 * 8 7 5 10 10 C 1.47344 * 120.54838 * 180.02562 * 9 8 7 11 11 O 1.21620 * 119.99932 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00422 * 359.97438 * 10 9 8 13 13 C 1.46496 * 120.00195 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47221 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.46683 * 295.00187 * 14 13 12 16 16 N 1.46497 * 109.47272 * 55.00095 * 14 13 12 17 17 C 1.36928 * 120.00328 * 205.00418 * 16 14 13 18 18 H 1.08001 * 119.99793 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00368 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00429 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99759 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47261 * 90.00116 * 21 19 17 23 23 H 1.48503 * 109.47045 * 209.99899 * 21 19 17 24 24 H 1.48501 * 109.47063 * 329.99744 * 21 19 17 25 25 C 1.53001 * 109.47212 * 175.00459 * 14 13 12 26 26 C 1.53001 * 117.49709 * 248.74798 * 25 14 13 27 27 C 1.52996 * 117.49844 * 180.08946 * 25 14 13 28 28 H 1.09000 * 109.47767 * 60.00092 * 1 2 3 29 29 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47105 * 300.00183 * 1 2 3 31 31 H 1.08004 * 120.40164 * 0.02562 * 4 3 2 32 32 H 0.96700 * 114.00053 * 269.72646 * 6 5 4 33 33 H 1.07996 * 119.66482 * 179.97438 * 8 7 5 34 34 H 0.96997 * 119.99956 * 0.02562 * 12 10 9 35 35 H 1.08995 * 109.47586 * 300.00093 * 13 12 10 36 36 H 1.09001 * 109.46992 * 60.00386 * 13 12 10 37 37 H 0.97001 * 119.99733 * 24.99861 * 16 14 13 38 38 H 0.96996 * 120.00545 * 179.97438 * 20 19 17 39 39 H 1.09000 * 115.55228 * 34.40930 * 25 14 13 40 40 H 1.09004 * 117.49870 * 359.97438 * 26 25 14 41 41 H 1.08998 * 117.50133 * 145.02037 * 26 25 14 42 42 H 1.08998 * 117.49641 * 214.97476 * 27 25 14 43 43 H 1.08998 * 117.50036 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 0.0052 5 6 1.9724 3.6002 -0.0007 6 8 1.2576 4.7516 -0.0007 7 7 3.2972 3.6548 -0.0005 8 6 4.0396 2.5680 -0.0001 9 6 3.4499 1.3033 -0.0002 10 6 4.2835 0.0883 0.0009 11 8 3.7590 -1.0090 0.0012 12 7 5.6271 0.1929 0.0015 13 6 6.4559 -1.0151 0.0032 14 6 7.9340 -0.6197 0.0042 15 1 8.1734 -0.1069 -0.9273 16 7 8.1999 0.2727 1.1352 17 6 9.2505 1.1493 1.0834 18 1 9.8834 1.1826 0.2088 19 6 9.5029 1.9945 2.1552 20 7 10.5131 2.8368 2.1056 21 14 8.4088 1.9364 3.6681 22 1 8.9549 0.9518 4.6365 23 1 8.3654 3.2798 4.2995 24 1 7.0363 1.5314 3.2712 25 6 8.7979 -1.8760 0.1316 26 6 9.5731 -2.0710 1.4362 27 6 10.3164 -1.6898 0.1535 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2269 2.3513 0.0097 32 1 1.0502 5.0857 -0.8841 33 1 5.1160 2.6560 -0.0004 34 1 6.0455 1.0680 0.0016 35 1 6.2373 -1.6046 0.8936 36 1 6.2382 -1.6063 -0.8864 37 1 7.6317 0.2425 1.9208 38 1 10.6892 3.4276 2.8544 39 1 8.4071 -2.7671 -0.3596 40 1 9.4678 -1.3040 2.2036 41 1 9.6926 -3.0904 1.8030 42 1 10.9246 -2.4586 -0.3230 43 1 10.6999 -0.6724 0.0768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690168233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:21 Heat of formation + Delta-G solvation = -23.779726 kcal Electronic energy + Delta-G solvation = -27223.787685 eV Core-core repulsion = 23271.840403 eV Total energy + Delta-G solvation = -3951.947281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22051 -39.25109 -38.93743 -37.71131 -36.97057 -34.58630 -33.30478 -31.89330 -31.45801 -30.69156 -28.59256 -27.72701 -24.71759 -23.55174 -23.05487 -22.45557 -21.54849 -20.51486 -19.56524 -19.30960 -18.21598 -17.71560 -17.39822 -16.93738 -16.26363 -15.59493 -15.41357 -15.31437 -15.11029 -14.82538 -14.66446 -14.47317 -14.03404 -13.61006 -13.20209 -13.11948 -12.86882 -12.76469 -12.44528 -12.23849 -11.88928 -11.79335 -11.56257 -11.21137 -10.97273 -10.80437 -10.58310 -10.23314 -10.16193 -9.60874 -9.57598 -9.47917 -9.41384 -9.21899 -9.14189 -9.02578 -8.71262 -7.38765 -5.84068 -3.21305 0.36225 0.97728 2.75971 2.80274 3.27729 3.32732 3.34246 3.37305 3.44197 3.67043 4.25605 4.44289 4.51890 4.53566 4.59968 4.74340 4.79168 5.01863 5.13524 5.15689 5.22287 5.27357 5.31596 5.42130 5.50907 5.67966 5.75870 5.86079 5.95390 5.98880 6.01837 6.28456 6.37559 6.55918 6.62147 6.77540 6.83643 7.01009 7.12896 7.13754 7.61875 7.77055 7.91815 8.34181 8.42696 9.11751 9.83933 10.02870 11.33446 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.003991 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.672121 B = 7014.107573 C = 8474.058341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.270 6.270 3 C 0.236 3.764 4 C -0.292 4.292 5 C 0.367 3.633 6 O -0.480 6.480 7 N -0.525 5.525 8 C 0.201 3.799 9 C -0.231 4.231 10 C 0.563 3.437 11 O -0.530 6.530 12 N -0.713 5.713 13 C 0.118 3.882 14 C 0.197 3.803 15 H 0.067 0.933 16 N -0.744 5.744 17 C -0.246 4.246 18 H 0.094 0.906 19 C 0.013 3.987 20 N -0.928 5.928 21 Si 0.875 3.125 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.276 1.276 25 C -0.178 4.178 26 C -0.165 4.165 27 C -0.170 4.170 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.150 0.850 32 H 0.405 0.595 33 H 0.177 0.823 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.959 -3.499 -7.320 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.178 6.178 3 C 0.180 3.820 4 C -0.314 4.314 5 C 0.189 3.811 6 O -0.288 6.288 7 N -0.247 5.247 8 C 0.043 3.957 9 C -0.237 4.237 10 C 0.349 3.651 11 O -0.407 6.407 12 N -0.366 5.366 13 C -0.006 4.006 14 C 0.087 3.913 15 H 0.085 0.915 16 N -0.387 5.387 17 C -0.376 4.376 18 H 0.112 0.888 19 C -0.184 4.184 20 N -0.575 5.575 21 Si 0.706 3.294 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.199 4.199 26 C -0.203 4.203 27 C -0.207 4.207 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.168 0.832 32 H 0.264 0.736 33 H 0.194 0.806 34 H 0.244 0.756 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.197 0.803 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.706 -3.588 -6.790 20.221 hybrid contribution -1.168 -0.068 0.833 1.436 sum -19.874 -3.655 -5.957 21.067 Atomic orbital electron populations 1.23266 0.78111 1.04806 1.01552 1.86397 1.21269 1.24589 1.85532 1.19121 0.90826 0.84821 0.87281 1.22060 1.02098 0.91652 1.15624 1.19026 0.86676 0.84960 0.90392 1.84709 1.71216 1.38727 1.34130 1.67249 1.06309 1.33284 1.17871 1.22865 1.00247 0.84812 0.87802 1.20583 0.91422 0.96235 1.15484 1.17597 0.82186 0.87956 0.77361 1.90806 1.72957 1.27201 1.49754 1.45908 1.05167 1.11230 1.74325 1.21649 0.90545 0.86432 1.01970 1.19975 0.89242 0.89464 0.92610 0.91509 1.42862 1.35559 1.43490 1.16776 1.19002 1.04544 1.11159 1.02870 0.88843 1.24621 0.97682 0.98361 0.97699 1.69676 1.30209 1.25568 1.32028 0.86714 0.80827 0.77161 0.84745 1.21113 1.21767 1.20260 1.22997 0.94408 0.99817 1.02713 1.22844 1.04177 1.00843 0.92395 1.22898 0.93199 1.03075 1.01498 0.92252 0.87473 0.92203 0.83211 0.73574 0.80582 0.75585 0.91560 0.91209 0.80349 0.92964 0.89317 0.87218 0.91099 0.90882 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.13 16 2 O -0.27 -3.52 8.71 -39.58 -0.34 -3.86 16 3 C 0.24 3.09 6.74 -38.36 -0.26 2.83 16 4 C -0.29 -3.12 9.02 -39.19 -0.35 -3.47 16 5 C 0.37 4.36 7.73 -17.05 -0.13 4.23 16 6 O -0.48 -4.61 13.54 -18.26 -0.25 -4.86 16 7 N -0.53 -7.36 10.36 -13.04 -0.14 -7.49 16 8 C 0.20 2.76 10.71 -17.16 -0.18 2.58 16 9 C -0.23 -3.34 5.90 -104.70 -0.62 -3.96 16 10 C 0.56 9.22 7.76 -12.56 -0.10 9.13 16 11 O -0.53 -10.07 15.28 -16.04 -0.25 -10.31 16 12 N -0.71 -11.08 5.34 -61.41 -0.33 -11.40 16 13 C 0.12 1.85 5.22 -4.04 -0.02 1.82 16 14 C 0.20 3.37 2.86 -67.93 -0.19 3.18 16 15 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 16 N -0.74 -15.29 2.88 -53.43 -0.15 -15.45 16 17 C -0.25 -6.12 8.64 -15.06 -0.13 -6.25 16 18 H 0.09 2.52 7.14 -52.49 -0.37 2.14 16 19 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 20 N -0.93 -27.45 13.97 55.49 0.78 -26.67 16 21 Si 0.88 21.07 27.73 -169.99 -4.71 16.36 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 25 C -0.18 -2.92 5.71 -90.62 -0.52 -3.43 16 26 C -0.17 -2.94 9.74 -26.69 -0.26 -3.20 16 27 C -0.17 -2.97 9.87 -26.70 -0.26 -3.23 16 28 H 0.06 0.33 7.72 -51.93 -0.40 -0.07 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.38 7.70 -51.92 -0.40 -0.02 16 31 H 0.15 1.14 6.45 -52.48 -0.34 0.80 16 32 H 0.41 1.67 9.06 45.56 0.41 2.08 16 33 H 0.18 2.23 6.41 -52.49 -0.34 1.89 16 34 H 0.41 6.14 6.19 -40.82 -0.25 5.89 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.36 7.70 5.66 -40.82 -0.23 7.47 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 40 H 0.11 2.28 6.68 -51.93 -0.35 1.93 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.11 2.23 6.22 -51.93 -0.32 1.91 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -33.56 358.21 -6.84 -40.40 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.13 Total: 1.60 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.16 Total: -61.02 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.84 Total: -19.04 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.56 -6.84 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690168233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.620 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds