Wall clock time and date at job start Tue Mar 31 2020 13:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35529 * 117.00051 * 2 1 4 4 C 1.38823 * 120.89223 * 0.24955 * 3 2 1 5 5 C 1.38711 * 119.19609 * 180.26788 * 4 3 2 6 6 O 1.35521 * 119.47148 * 179.75323 * 5 4 3 7 7 N 1.32586 * 121.05502 * 359.46911 * 5 4 3 8 8 C 1.31618 * 121.97964 * 0.26312 * 7 5 4 9 9 C 1.39544 * 120.66186 * 0.02562 * 8 7 5 10 10 C 1.47344 * 120.54838 * 180.02562 * 9 8 7 11 11 O 1.21620 * 119.99932 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00422 * 359.97438 * 10 9 8 13 13 C 1.46496 * 120.00195 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47221 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.46683 * 295.00187 * 14 13 12 16 16 N 1.46497 * 109.47272 * 55.00095 * 14 13 12 17 17 C 1.36928 * 120.00328 * 205.00418 * 16 14 13 18 18 H 1.08001 * 119.99793 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00368 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00429 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99759 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47261 * 90.00116 * 21 19 17 23 23 H 1.48503 * 109.47045 * 209.99899 * 21 19 17 24 24 H 1.48501 * 109.47063 * 329.99744 * 21 19 17 25 25 C 1.53001 * 109.47212 * 175.00459 * 14 13 12 26 26 C 1.53001 * 117.49709 * 248.74798 * 25 14 13 27 27 C 1.52996 * 117.49844 * 180.08946 * 25 14 13 28 28 H 1.09000 * 109.47767 * 60.00092 * 1 2 3 29 29 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47105 * 300.00183 * 1 2 3 31 31 H 1.08004 * 120.40164 * 0.02562 * 4 3 2 32 32 H 0.96700 * 114.00053 * 269.72646 * 6 5 4 33 33 H 1.07996 * 119.66482 * 179.97438 * 8 7 5 34 34 H 0.96997 * 119.99956 * 0.02562 * 12 10 9 35 35 H 1.08995 * 109.47586 * 300.00093 * 13 12 10 36 36 H 1.09001 * 109.46992 * 60.00386 * 13 12 10 37 37 H 0.97001 * 119.99733 * 24.99861 * 16 14 13 38 38 H 0.96996 * 120.00545 * 179.97438 * 20 19 17 39 39 H 1.09000 * 115.55228 * 34.40930 * 25 14 13 40 40 H 1.09004 * 117.49870 * 359.97438 * 26 25 14 41 41 H 1.08998 * 117.50133 * 145.02037 * 26 25 14 42 42 H 1.08998 * 117.49641 * 214.97476 * 27 25 14 43 43 H 1.08998 * 117.50036 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3835 0.0052 5 6 1.9724 3.6002 -0.0007 6 8 1.2576 4.7516 -0.0007 7 7 3.2972 3.6548 -0.0005 8 6 4.0396 2.5680 -0.0001 9 6 3.4499 1.3033 -0.0002 10 6 4.2835 0.0883 0.0009 11 8 3.7590 -1.0090 0.0012 12 7 5.6271 0.1929 0.0015 13 6 6.4559 -1.0151 0.0032 14 6 7.9340 -0.6197 0.0042 15 1 8.1734 -0.1069 -0.9273 16 7 8.1999 0.2727 1.1352 17 6 9.2505 1.1493 1.0834 18 1 9.8834 1.1826 0.2088 19 6 9.5029 1.9945 2.1552 20 7 10.5131 2.8368 2.1056 21 14 8.4088 1.9364 3.6681 22 1 8.9549 0.9518 4.6365 23 1 8.3654 3.2798 4.2995 24 1 7.0363 1.5314 3.2712 25 6 8.7979 -1.8760 0.1316 26 6 9.5731 -2.0710 1.4362 27 6 10.3164 -1.6898 0.1535 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2269 2.3513 0.0097 32 1 1.0502 5.0857 -0.8841 33 1 5.1160 2.6560 -0.0004 34 1 6.0455 1.0680 0.0016 35 1 6.2373 -1.6046 0.8936 36 1 6.2382 -1.6063 -0.8864 37 1 7.6317 0.2425 1.9208 38 1 10.6892 3.4276 2.8544 39 1 8.4071 -2.7671 -0.3596 40 1 9.4678 -1.3040 2.2036 41 1 9.6926 -3.0904 1.8030 42 1 10.9246 -2.4586 -0.3230 43 1 10.6999 -0.6724 0.0768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690168233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:20 Heat of formation + Delta-G solvation = -50.680560 kcal Electronic energy + Delta-G solvation = -27224.954192 eV Core-core repulsion = 23271.840403 eV Total energy + Delta-G solvation = -3953.113789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17086 -40.46252 -39.80312 -39.14345 -37.84809 -35.93717 -35.08671 -33.15306 -32.74066 -31.92920 -29.98912 -28.47146 -25.90975 -25.01190 -24.26908 -23.73164 -22.96776 -21.74044 -20.78631 -20.38301 -19.77320 -18.83178 -18.61545 -17.91500 -17.13885 -16.86957 -16.71287 -16.38484 -16.32174 -16.05209 -15.95327 -15.58343 -15.39737 -15.01915 -14.51907 -14.49872 -14.28428 -14.03944 -13.73762 -13.08467 -13.00412 -12.94570 -12.62234 -12.57184 -12.50495 -12.47749 -12.11629 -12.02805 -11.60855 -11.31373 -11.06237 -10.87690 -10.63569 -10.56658 -10.31819 -10.20019 -9.89639 -9.29908 -7.94808 -5.27002 -0.59389 0.04860 1.39413 1.41297 1.47441 1.71630 1.99578 2.13728 2.43482 2.51479 2.64130 3.11068 3.37277 3.38996 3.54221 3.62121 3.66657 3.90118 4.05321 4.18268 4.27245 4.30661 4.32113 4.34395 4.38518 4.50229 4.54281 4.60520 4.70331 4.71901 4.89869 4.99961 5.13970 5.19041 5.22821 5.44153 5.55416 5.64359 5.90879 6.05725 6.28043 6.47990 6.53298 6.73194 7.14040 7.18702 7.88565 8.06850 9.26288 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.003991 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.672121 B = 7014.107573 C = 8474.058341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.298 6.298 3 C 0.231 3.769 4 C -0.277 4.277 5 C 0.369 3.631 6 O -0.483 6.483 7 N -0.552 5.552 8 C 0.201 3.799 9 C -0.253 4.253 10 C 0.565 3.435 11 O -0.560 6.560 12 N -0.713 5.713 13 C 0.127 3.873 14 C 0.196 3.804 15 H 0.066 0.934 16 N -0.741 5.741 17 C -0.204 4.204 18 H 0.069 0.931 19 C -0.050 4.050 20 N -0.980 5.980 21 Si 0.932 3.068 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.254 1.254 25 C -0.163 4.163 26 C -0.173 4.173 27 C -0.175 4.175 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.429 0.571 33 H 0.178 0.822 34 H 0.408 0.592 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.363 0.637 38 H 0.253 0.747 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.799 -4.721 -7.934 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.206 6.206 3 C 0.175 3.825 4 C -0.299 4.299 5 C 0.192 3.808 6 O -0.295 6.295 7 N -0.275 5.275 8 C 0.042 3.958 9 C -0.260 4.260 10 C 0.352 3.648 11 O -0.440 6.440 12 N -0.365 5.365 13 C 0.003 3.997 14 C 0.088 3.912 15 H 0.084 0.916 16 N -0.384 5.384 17 C -0.335 4.335 18 H 0.087 0.913 19 C -0.242 4.242 20 N -0.631 5.631 21 Si 0.762 3.238 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.179 1.179 25 C -0.184 4.184 26 C -0.210 4.210 27 C -0.212 4.212 28 H 0.099 0.901 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.201 0.799 32 H 0.292 0.708 33 H 0.195 0.805 34 H 0.246 0.754 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.197 0.803 38 H 0.063 0.937 39 H 0.141 0.859 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.607 -4.838 -7.450 23.361 hybrid contribution -0.376 0.290 0.901 1.018 sum -21.983 -4.548 -6.549 23.385 Atomic orbital electron populations 1.23623 0.75467 1.06345 1.03302 1.86362 1.24119 1.24834 1.85304 1.19262 0.90564 0.85736 0.86955 1.22259 1.03520 0.90144 1.13953 1.19222 0.86231 0.86044 0.89286 1.84664 1.70593 1.37945 1.36298 1.67257 1.07670 1.33457 1.19102 1.22829 1.00409 0.84713 0.87811 1.20496 0.92247 0.95484 1.17753 1.17844 0.82218 0.88218 0.76470 1.90778 1.73423 1.28378 1.51398 1.45904 1.05196 1.11244 1.74141 1.21553 0.88965 0.86568 1.02594 1.20131 0.90760 0.89291 0.91052 0.91629 1.42807 1.34283 1.43412 1.17899 1.18899 1.03788 1.09806 1.00963 0.91348 1.25174 0.99301 0.99157 1.00563 1.69829 1.32859 1.27591 1.32814 0.85770 0.80448 0.76049 0.81575 1.21604 1.23270 1.17899 1.23001 0.93357 1.00234 1.01763 1.22797 1.05050 1.01240 0.91902 1.22820 0.94469 1.01883 1.02040 0.90053 0.86248 0.90766 0.79864 0.70764 0.80532 0.75423 0.92012 0.89437 0.80334 0.93744 0.85936 0.90527 0.88553 0.88183 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.19 16 2 O -0.30 -7.24 8.71 -67.96 -0.59 -7.83 16 3 C 0.23 5.67 6.74 23.06 0.16 5.82 16 4 C -0.28 -5.15 9.02 22.52 0.20 -4.95 16 5 C 0.37 7.96 7.73 84.69 0.65 8.61 16 6 O -0.48 -7.96 13.54 -88.24 -1.20 -9.15 16 7 N -0.55 -14.86 10.36 -307.96 -3.19 -18.05 16 8 C 0.20 5.41 10.71 85.04 0.91 6.32 16 9 C -0.25 -7.12 5.90 -19.92 -0.12 -7.24 16 10 C 0.57 18.07 7.76 86.64 0.67 18.74 16 11 O -0.56 -20.81 15.28 16.27 0.25 -20.56 16 12 N -0.71 -21.41 5.34 -466.45 -2.49 -23.90 16 13 C 0.13 3.73 5.22 86.38 0.45 4.18 16 14 C 0.20 6.44 2.86 44.99 0.13 6.57 16 15 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 16 N -0.74 -30.12 2.88 -322.94 -0.93 -31.05 16 17 C -0.20 -10.29 8.64 84.04 0.73 -9.56 16 18 H 0.07 3.81 7.14 -2.91 -0.02 3.79 16 19 C -0.05 -2.77 5.50 84.86 0.47 -2.31 16 20 N -0.98 -60.12 13.97 21.65 0.30 -59.82 16 21 Si 0.93 44.32 27.73 68.60 1.90 46.23 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 24 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 25 C -0.16 -4.95 5.71 -10.79 -0.06 -5.01 16 26 C -0.17 -5.86 9.74 30.62 0.30 -5.57 16 27 C -0.18 -5.92 9.87 30.62 0.30 -5.62 16 28 H 0.08 0.63 7.72 -2.39 -0.02 0.61 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 0.69 7.70 -2.38 -0.02 0.67 16 31 H 0.18 2.03 6.45 -2.91 -0.02 2.01 16 32 H 0.43 2.25 9.06 -74.06 -0.67 1.58 16 33 H 0.18 4.48 6.41 -2.91 -0.02 4.46 16 34 H 0.41 12.09 6.19 -92.71 -0.57 11.51 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.36 15.03 5.66 -92.71 -0.52 14.50 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.12 3.01 8.11 -2.39 -0.02 2.99 16 40 H 0.08 3.15 6.68 -2.39 -0.02 3.13 16 41 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.07 3.01 6.22 -2.39 -0.01 3.00 16 Total: -1.00 -74.38 358.21 -0.78 -75.16 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -0.74 Total: 37.79 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.90 Total: 11.19 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -6.31 Total: -132.82 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.54 Total: -37.55 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.90 Total: 46.23 kcal Total: -74.38 -0.78 -75.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690168233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.479 kcal (2) G-P(sol) polarization free energy of solvation -74.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds