Wall clock time and date at job start Tue Mar 31 2020 13:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99947 * 2 1 4 4 O 1.21615 * 119.99770 * 185.86253 * 3 2 1 5 5 C 1.47376 * 119.99902 * 5.87125 * 3 2 1 6 6 C 1.47020 * 127.19505 * 5.38732 * 5 3 2 7 7 C 1.34171 * 105.95656 * 179.97438 * 6 5 3 8 8 O 1.34215 * 109.12528 * 0.02562 * 7 6 5 9 9 C 1.33654 * 110.90569 * 359.75419 * 8 7 6 10 10 C 1.46498 * 119.99763 * 180.02562 * 2 1 3 11 11 H 1.09010 * 110.28656 * 180.69754 * 10 2 1 12 12 C 1.54257 * 110.32499 * 302.81985 * 10 2 1 13 13 C 1.54378 * 105.06089 * 118.90051 * 12 10 2 14 14 N 1.48558 * 104.59529 * 23.85231 * 13 12 10 15 15 C 1.46897 * 111.00294 * 200.96373 * 14 13 12 16 16 C 1.50702 * 109.47486 * 181.99613 * 15 14 13 17 17 O 1.21288 * 119.99746 * 6.44560 * 16 15 14 18 18 N 1.34768 * 120.00332 * 186.45705 * 16 15 14 19 19 C 1.37090 * 120.00466 * 179.97438 * 18 16 15 20 20 H 1.08009 * 120.00025 * 0.02562 * 19 18 16 21 21 C 1.38957 * 120.00443 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99654 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99806 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47141 * 89.99969 * 23 21 19 25 25 H 1.48499 * 109.46984 * 210.00229 * 23 21 19 26 26 H 1.48506 * 109.47091 * 329.99962 * 23 21 19 27 27 C 1.48723 * 104.28685 * 320.57553 * 14 13 12 28 28 H 1.09006 * 109.46848 * 275.40687 * 1 2 3 29 29 H 1.08992 * 109.47431 * 35.40254 * 1 2 3 30 30 H 1.09000 * 109.47586 * 155.41337 * 1 2 3 31 31 H 1.08005 * 127.02238 * 359.93876 * 6 5 3 32 32 H 1.07999 * 125.44057 * 179.97438 * 7 6 5 33 33 H 1.08004 * 125.79848 * 180.26703 * 9 8 7 34 34 H 1.09002 * 110.32555 * 237.79715 * 12 10 2 35 35 H 1.09001 * 110.32466 * 359.90102 * 12 10 2 36 36 H 1.09000 * 110.41531 * 142.63150 * 13 12 10 37 37 H 1.08998 * 110.41022 * 265.07724 * 13 12 10 38 38 H 1.09007 * 109.46595 * 301.98937 * 15 14 13 39 39 H 1.08998 * 109.47239 * 61.98614 * 15 14 13 40 40 H 0.97007 * 119.99727 * 359.97438 * 18 16 15 41 41 H 0.97007 * 119.99392 * 180.02562 * 22 21 19 42 42 H 1.09001 * 110.38787 * 280.63392 * 27 14 13 43 43 H 1.09001 * 110.50580 * 158.14781 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3502 1.1699 -0.1076 5 6 1.4078 2.4402 0.1306 6 6 -0.0305 2.6177 0.3783 7 6 -0.2369 3.9428 0.4195 8 8 0.9298 4.5759 0.2214 9 6 1.9250 3.7000 0.0517 10 6 2.1974 -1.2687 -0.0006 11 1 3.2718 -1.0849 0.0120 12 6 1.7863 -2.1253 1.2147 13 6 1.1848 -3.4133 0.6126 14 7 1.7900 -3.5121 -0.7405 15 6 0.9810 -4.3684 -1.6180 16 6 1.6502 -4.4842 -2.9633 17 8 2.7525 -4.0084 -3.1351 18 7 1.0238 -5.1162 -3.9754 19 6 1.6324 -5.2210 -5.1994 20 1 2.6141 -4.7975 -5.3524 21 6 0.9867 -5.8731 -6.2428 22 7 1.5704 -5.9740 -7.4159 23 14 -0.7109 -6.6063 -5.9780 24 1 -1.7447 -5.5909 -6.3024 25 1 -0.8830 -7.7877 -6.8610 26 1 -0.8543 -7.0232 -4.5599 27 6 1.8118 -2.1100 -1.2361 28 1 -0.3633 0.0968 1.0232 29 1 -0.3634 0.8376 -0.5953 30 1 -0.3634 -0.9345 -0.4276 31 1 -0.7700 1.8402 0.5014 32 1 -1.1899 4.4233 0.5849 33 1 2.9621 3.9476 -0.1204 34 1 2.6591 -2.3634 1.8227 35 1 1.0408 -1.6010 1.8126 36 1 1.4588 -4.2789 1.2157 37 1 0.1007 -3.3280 0.5387 38 1 0.8868 -5.3589 -1.1726 39 1 -0.0093 -3.9299 -1.7412 40 1 0.1422 -5.4969 -3.8379 41 1 1.1195 -6.4289 -8.1444 42 1 0.8260 -1.8207 -1.6005 43 1 2.5576 -1.9946 -2.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698555640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:13 Heat of formation + Delta-G solvation = -10.477135 kcal Electronic energy + Delta-G solvation = -26966.042226 eV Core-core repulsion = 23014.671788 eV Total energy + Delta-G solvation = -3951.370438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.88886 -40.28696 -38.86144 -37.63649 -35.41816 -33.95917 -33.29960 -31.71788 -31.18635 -30.11871 -28.71478 -27.40578 -26.71684 -24.32410 -23.55488 -22.06517 -21.21510 -20.58944 -19.59273 -19.32979 -18.27970 -17.92726 -16.99633 -16.49980 -16.41873 -16.01523 -15.46599 -15.30046 -15.03502 -14.83764 -14.41186 -14.19226 -13.89691 -13.68582 -13.41793 -13.22738 -12.99046 -12.81197 -12.61563 -12.38264 -12.32255 -11.83817 -11.79268 -11.65037 -11.39370 -11.34301 -11.05595 -10.71513 -10.60212 -10.15723 -10.04604 -9.97157 -9.55289 -9.18072 -8.76742 -8.61150 -8.19986 -8.12496 -6.30490 -3.81828 1.10819 1.70359 2.56972 2.79638 3.01632 3.05382 3.14114 3.14594 3.74189 4.01023 4.10276 4.19489 4.37306 4.60434 4.62204 4.64413 4.81322 4.87198 5.01841 5.05834 5.13836 5.19146 5.21450 5.28678 5.35088 5.43480 5.53652 5.64152 5.65021 5.72394 5.77049 5.87533 5.89936 5.99058 6.01867 6.31810 6.41064 6.63443 6.99660 7.05372 7.20641 7.58675 8.01980 8.15167 8.60822 8.96145 9.42896 9.84174 10.82756 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.002744 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.013428 B =10201.541750 C =10722.435257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.600 5.600 3 C 0.589 3.411 4 O -0.539 6.539 5 C -0.240 4.240 6 C -0.206 4.206 7 C -0.039 4.039 8 O -0.177 6.177 9 C 0.052 3.948 10 C 0.136 3.864 11 H 0.114 0.886 12 C -0.131 4.131 13 C 0.030 3.970 14 N -0.482 5.482 15 C 0.033 3.967 16 C 0.451 3.549 17 O -0.556 6.556 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.029 3.971 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.172 0.828 32 H 0.207 0.793 33 H 0.218 0.782 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.369 0.631 41 H 0.273 0.727 42 H 0.044 0.956 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 15.527 20.054 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.332 5.332 3 C 0.379 3.621 4 O -0.417 6.417 5 C -0.244 4.244 6 C -0.225 4.225 7 C -0.105 4.105 8 O -0.071 6.071 9 C -0.019 4.019 10 C 0.032 3.968 11 H 0.132 0.868 12 C -0.170 4.170 13 C -0.098 4.098 14 N -0.206 5.206 15 C -0.098 4.098 16 C 0.237 3.763 17 O -0.437 6.437 18 N -0.232 5.232 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.099 4.099 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.189 0.811 32 H 0.224 0.776 33 H 0.234 0.766 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.202 0.798 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.246 15.817 19.648 26.537 hybrid contribution -2.543 -0.737 -0.078 2.648 sum -10.789 15.080 19.570 26.959 Atomic orbital electron populations 1.22350 0.80128 1.03886 1.01540 1.47633 1.06755 1.05588 1.73263 1.17281 0.86323 0.82552 0.75939 1.90812 1.13571 1.87100 1.50235 1.21440 0.94352 0.94240 1.14409 1.23629 0.95247 0.97013 1.06601 1.24019 0.88733 0.92163 1.05595 1.83834 1.16203 1.37917 1.69181 1.24447 0.93177 0.86437 0.97848 1.21932 0.98534 0.81647 0.94655 0.86799 1.22657 1.01634 0.95326 0.97377 1.23166 0.96683 0.98315 0.91643 1.65157 1.46563 1.08015 1.00911 1.22101 0.94605 0.98986 0.94157 1.19605 0.87613 0.84172 0.84929 1.90568 1.20224 1.50196 1.82736 1.42209 1.17943 1.51788 1.11254 1.19433 1.04436 1.34661 0.84703 0.86267 1.25038 0.98315 0.97645 0.95201 1.69627 1.38106 1.42620 1.01832 0.86675 0.84504 0.79848 0.78373 1.19718 1.20172 1.19496 1.23548 1.01687 0.87241 0.97426 0.92294 0.89660 0.90856 0.81089 0.77640 0.76555 0.90076 0.90870 0.89776 0.94067 0.88818 0.93413 0.79794 0.91633 0.93766 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 7.43 59.85 0.44 0.97 16 2 N -0.60 -7.17 2.80 -173.64 -0.49 -7.66 16 3 C 0.59 8.00 7.66 -12.54 -0.10 7.90 16 4 O -0.54 -9.20 16.30 5.26 0.09 -9.11 16 5 C -0.24 -2.55 6.09 -103.28 -0.63 -3.18 16 6 C -0.21 -1.55 8.89 -37.46 -0.33 -1.89 16 7 C -0.04 -0.25 12.03 29.30 0.35 0.10 16 8 O -0.18 -1.46 10.52 7.65 0.08 -1.38 16 9 C 0.05 0.47 11.91 30.07 0.36 0.83 16 10 C 0.14 1.84 3.44 -66.55 -0.23 1.61 16 11 H 0.11 1.81 6.98 -51.92 -0.36 1.44 16 12 C -0.13 -1.41 6.47 -25.35 -0.16 -1.57 16 13 C 0.03 0.34 6.50 -2.18 -0.01 0.33 16 14 N -0.48 -7.68 5.08 -231.27 -1.18 -8.85 16 15 C 0.03 0.55 5.31 -4.98 -0.03 0.53 16 16 C 0.45 10.29 7.47 -10.99 -0.08 10.21 16 17 O -0.56 -15.07 14.45 5.55 0.08 -14.99 16 18 N -0.59 -14.12 5.09 -10.96 -0.06 -14.17 16 19 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 20 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 21 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 22 N -0.88 -25.91 13.96 55.50 0.77 -25.14 16 23 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 C 0.03 0.47 5.25 -2.09 -0.01 0.46 16 28 H 0.06 0.36 7.41 -51.93 -0.38 -0.02 16 29 H 0.09 0.63 5.14 -51.93 -0.27 0.36 16 30 H 0.07 0.61 6.47 -51.93 -0.34 0.28 16 31 H 0.17 0.91 4.82 -52.48 -0.25 0.65 16 32 H 0.21 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.22 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.66 7.30 -51.93 -0.38 0.28 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.41 7.99 -51.93 -0.41 -0.01 16 38 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 39 H 0.05 0.68 7.96 -51.93 -0.41 0.27 16 40 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.04 0.66 6.06 -51.93 -0.31 0.35 16 43 H 0.11 2.14 6.90 -51.93 -0.36 1.78 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -36.36 349.80 -6.20 -42.57 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.39 Total: 10.32 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -0.68 Total: 8.55 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.94 Total: -55.83 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: 0.25 Total: -25.48 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.36 -6.20 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.089 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds