Wall clock time and date at job start Tue Mar 31 2020 13:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99947 * 2 1 4 4 O 1.21615 * 119.99770 * 185.86253 * 3 2 1 5 5 C 1.47376 * 119.99902 * 5.87125 * 3 2 1 6 6 C 1.47020 * 127.19505 * 5.38732 * 5 3 2 7 7 C 1.34171 * 105.95656 * 179.97438 * 6 5 3 8 8 O 1.34215 * 109.12528 * 0.02562 * 7 6 5 9 9 C 1.33654 * 110.90569 * 359.75419 * 8 7 6 10 10 C 1.46498 * 119.99763 * 180.02562 * 2 1 3 11 11 H 1.09010 * 110.28656 * 180.69754 * 10 2 1 12 12 C 1.54257 * 110.32499 * 302.81985 * 10 2 1 13 13 C 1.54378 * 105.06089 * 118.90051 * 12 10 2 14 14 N 1.48558 * 104.59529 * 23.85231 * 13 12 10 15 15 C 1.46897 * 111.00294 * 200.96373 * 14 13 12 16 16 C 1.50702 * 109.47486 * 181.99613 * 15 14 13 17 17 O 1.21288 * 119.99746 * 6.44560 * 16 15 14 18 18 N 1.34768 * 120.00332 * 186.45705 * 16 15 14 19 19 C 1.37090 * 120.00466 * 179.97438 * 18 16 15 20 20 H 1.08009 * 120.00025 * 0.02562 * 19 18 16 21 21 C 1.38957 * 120.00443 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99654 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99806 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47141 * 89.99969 * 23 21 19 25 25 H 1.48499 * 109.46984 * 210.00229 * 23 21 19 26 26 H 1.48506 * 109.47091 * 329.99962 * 23 21 19 27 27 C 1.48723 * 104.28685 * 320.57553 * 14 13 12 28 28 H 1.09006 * 109.46848 * 275.40687 * 1 2 3 29 29 H 1.08992 * 109.47431 * 35.40254 * 1 2 3 30 30 H 1.09000 * 109.47586 * 155.41337 * 1 2 3 31 31 H 1.08005 * 127.02238 * 359.93876 * 6 5 3 32 32 H 1.07999 * 125.44057 * 179.97438 * 7 6 5 33 33 H 1.08004 * 125.79848 * 180.26703 * 9 8 7 34 34 H 1.09002 * 110.32555 * 237.79715 * 12 10 2 35 35 H 1.09001 * 110.32466 * 359.90102 * 12 10 2 36 36 H 1.09000 * 110.41531 * 142.63150 * 13 12 10 37 37 H 1.08998 * 110.41022 * 265.07724 * 13 12 10 38 38 H 1.09007 * 109.46595 * 301.98937 * 15 14 13 39 39 H 1.08998 * 109.47239 * 61.98614 * 15 14 13 40 40 H 0.97007 * 119.99727 * 359.97438 * 18 16 15 41 41 H 0.97007 * 119.99392 * 180.02562 * 22 21 19 42 42 H 1.09001 * 110.38787 * 280.63392 * 27 14 13 43 43 H 1.09001 * 110.50580 * 158.14781 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3502 1.1699 -0.1076 5 6 1.4078 2.4402 0.1306 6 6 -0.0305 2.6177 0.3783 7 6 -0.2369 3.9428 0.4195 8 8 0.9298 4.5759 0.2214 9 6 1.9250 3.7000 0.0517 10 6 2.1974 -1.2687 -0.0006 11 1 3.2718 -1.0849 0.0120 12 6 1.7863 -2.1253 1.2147 13 6 1.1848 -3.4133 0.6126 14 7 1.7900 -3.5121 -0.7405 15 6 0.9810 -4.3684 -1.6180 16 6 1.6502 -4.4842 -2.9633 17 8 2.7525 -4.0084 -3.1351 18 7 1.0238 -5.1162 -3.9754 19 6 1.6324 -5.2210 -5.1994 20 1 2.6141 -4.7975 -5.3524 21 6 0.9867 -5.8731 -6.2428 22 7 1.5704 -5.9740 -7.4159 23 14 -0.7109 -6.6063 -5.9780 24 1 -1.7447 -5.5909 -6.3024 25 1 -0.8830 -7.7877 -6.8610 26 1 -0.8543 -7.0232 -4.5599 27 6 1.8118 -2.1100 -1.2361 28 1 -0.3633 0.0968 1.0232 29 1 -0.3634 0.8376 -0.5953 30 1 -0.3634 -0.9345 -0.4276 31 1 -0.7700 1.8402 0.5014 32 1 -1.1899 4.4233 0.5849 33 1 2.9621 3.9476 -0.1204 34 1 2.6591 -2.3634 1.8227 35 1 1.0408 -1.6010 1.8126 36 1 1.4588 -4.2789 1.2157 37 1 0.1007 -3.3280 0.5387 38 1 0.8868 -5.3589 -1.1726 39 1 -0.0093 -3.9299 -1.7412 40 1 0.1422 -5.4969 -3.8379 41 1 1.1195 -6.4289 -8.1444 42 1 0.8260 -1.8207 -1.6005 43 1 2.5576 -1.9946 -2.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698555640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:13 Heat of formation + Delta-G solvation = -40.620884 kcal Electronic energy + Delta-G solvation = -26967.349357 eV Core-core repulsion = 23014.671788 eV Total energy + Delta-G solvation = -3952.677569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.51275 -41.34837 -40.37028 -39.05568 -36.49558 -35.93607 -34.10200 -33.75346 -32.30332 -30.73883 -29.72426 -28.58152 -27.89419 -25.98113 -24.57984 -22.67126 -22.36174 -21.47649 -21.22779 -20.41109 -20.18412 -18.74368 -17.98152 -17.73603 -17.26669 -17.13697 -16.77918 -16.63303 -16.24657 -15.97134 -15.70186 -15.35381 -15.04658 -14.84655 -14.47396 -14.36188 -14.20876 -14.17850 -13.96689 -13.72908 -13.33045 -13.10052 -13.00790 -12.76033 -12.44961 -12.41786 -12.36639 -12.24436 -11.97948 -11.79630 -11.49591 -11.12685 -10.79620 -10.41511 -10.25556 -9.91016 -9.58944 -9.39147 -8.41885 -6.03297 0.33284 1.15365 1.29425 1.35444 1.44836 1.77570 1.95453 2.11109 2.23026 2.24253 2.68429 3.14038 3.25091 3.43472 3.63813 3.70630 3.80898 3.99878 4.03059 4.13916 4.16948 4.27786 4.33514 4.38800 4.50644 4.52337 4.60015 4.65637 4.72379 4.80954 4.91317 4.97581 5.02463 5.06936 5.13599 5.35973 5.41666 5.51792 5.81872 5.90566 6.01183 6.03247 6.29879 6.59319 6.88058 7.03711 7.39051 7.97842 8.76220 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.002744 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.013428 B =10201.541750 C =10722.435257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.598 5.598 3 C 0.579 3.421 4 O -0.593 6.593 5 C -0.267 4.267 6 C -0.211 4.211 7 C -0.028 4.028 8 O -0.181 6.181 9 C 0.047 3.953 10 C 0.140 3.860 11 H 0.074 0.926 12 C -0.119 4.119 13 C 0.036 3.964 14 N -0.513 5.513 15 C 0.047 3.953 16 C 0.447 3.553 17 O -0.611 6.611 18 N -0.591 5.591 19 C -0.329 4.329 20 H 0.050 0.950 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.228 1.228 27 C 0.037 3.963 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.197 0.803 32 H 0.250 0.750 33 H 0.223 0.777 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.057 0.943 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.722 15.193 23.242 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.329 5.329 3 C 0.370 3.630 4 O -0.476 6.476 5 C -0.271 4.271 6 C -0.229 4.229 7 C -0.094 4.094 8 O -0.075 6.075 9 C -0.024 4.024 10 C 0.035 3.965 11 H 0.093 0.907 12 C -0.157 4.157 13 C -0.091 4.091 14 N -0.238 5.238 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.495 6.495 18 N -0.233 5.233 19 C -0.458 4.458 20 H 0.068 0.932 21 C -0.216 4.216 22 N -0.578 5.578 23 Si 0.788 3.212 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.151 1.151 27 C -0.092 4.092 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.214 0.786 32 H 0.265 0.735 33 H 0.240 0.760 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.104 0.896 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.829 15.484 22.880 30.895 hybrid contribution -0.689 -0.532 -1.099 1.402 sum -14.518 14.952 21.780 30.145 Atomic orbital electron populations 1.22675 0.77325 1.04627 1.03885 1.47719 1.08419 1.04423 1.72292 1.17838 0.85989 0.83957 0.75178 1.90774 1.15966 1.87921 1.52909 1.21418 0.96299 0.93054 1.16353 1.23870 0.93762 0.98313 1.06985 1.24881 0.89155 0.92010 1.03310 1.83862 1.16762 1.37936 1.68964 1.24638 0.93890 0.86445 0.97476 1.21660 0.96921 0.82670 0.95254 0.90727 1.22612 1.02444 0.94717 0.95945 1.23275 0.98286 0.98915 0.88578 1.65044 1.48375 1.07459 1.02953 1.22043 0.95130 1.01312 0.89995 1.20992 0.86955 0.81639 0.86932 1.90563 1.23063 1.51717 1.84127 1.42011 1.18744 1.52609 1.09941 1.18977 1.02875 1.36215 0.87747 0.93182 1.26182 1.04196 0.97274 0.93933 1.69823 1.41007 1.43629 1.03319 0.85323 0.76558 0.78721 0.80630 1.17993 1.20079 1.15094 1.23272 1.00351 0.88582 0.96977 0.89015 0.88719 0.90327 0.78635 0.73454 0.76042 0.90197 0.87942 0.88203 0.90836 0.85535 0.89586 0.77387 0.91141 0.92504 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 7.43 127.77 0.95 1.68 16 2 N -0.60 -13.96 2.80 -821.52 -2.30 -16.26 16 3 C 0.58 16.31 7.66 86.65 0.66 16.97 16 4 O -0.59 -22.12 16.30 -4.08 -0.07 -22.18 16 5 C -0.27 -5.55 6.09 -18.99 -0.12 -5.66 16 6 C -0.21 -2.55 8.89 23.65 0.21 -2.34 16 7 C -0.03 -0.26 12.03 66.89 0.80 0.54 16 8 O -0.18 -2.68 10.52 4.45 0.05 -2.64 16 9 C 0.05 0.85 11.91 67.39 0.80 1.65 16 10 C 0.14 3.84 3.44 45.88 0.16 3.99 16 11 H 0.07 2.62 6.98 -2.38 -0.02 2.61 16 12 C -0.12 -2.24 6.47 31.49 0.20 -2.04 16 13 C 0.04 0.68 6.50 86.45 0.56 1.24 16 14 N -0.51 -15.57 5.08 -885.61 -4.50 -20.07 16 15 C 0.05 1.40 5.31 85.56 0.45 1.85 16 16 C 0.45 20.60 7.47 87.66 0.65 21.26 16 17 O -0.61 -35.37 14.45 -3.05 -0.04 -35.42 16 18 N -0.59 -28.09 5.09 -306.99 -1.56 -29.66 16 19 C -0.33 -19.63 10.16 84.04 0.85 -18.77 16 20 H 0.05 3.60 7.39 -2.91 -0.02 3.57 16 21 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 22 N -0.94 -57.38 13.96 21.67 0.30 -57.08 16 23 Si 0.97 38.56 27.74 68.60 1.90 40.46 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 27 C 0.04 1.22 5.25 86.42 0.45 1.67 16 28 H 0.09 0.65 7.41 -2.38 -0.02 0.63 16 29 H 0.09 1.09 5.14 -2.39 -0.01 1.08 16 30 H 0.08 0.98 6.47 -2.39 -0.02 0.96 16 31 H 0.20 1.20 4.82 -2.91 -0.01 1.19 16 32 H 0.25 -0.08 8.06 -2.91 -0.02 -0.10 16 33 H 0.22 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.37 7.30 -2.39 -0.02 1.35 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 0.96 7.99 -2.39 -0.02 0.94 16 38 H 0.13 3.06 8.14 -2.38 -0.02 3.04 16 39 H 0.09 1.99 7.96 -2.39 -0.02 1.97 16 40 H 0.39 15.05 5.76 -92.70 -0.53 14.51 16 41 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 42 H 0.06 1.65 6.06 -2.39 -0.01 1.64 16 43 H 0.04 2.02 6.90 -2.39 -0.02 2.00 16 Total: -1.00 -91.83 349.80 1.37 -90.45 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.47 Total: 30.87 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 7.12 Total: 21.52 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -8.06 Total: -123.07 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -0.06 Total: -60.24 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 1.90 Total: 40.46 kcal Total: -91.83 1.37 -90.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698555640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.833 kcal (2) G-P(sol) polarization free energy of solvation -91.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds