Wall clock time and date at job start Tue Mar 31 2020 13:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99734 * 2 1 4 4 C 1.52998 * 109.46504 * 269.99649 * 3 2 1 5 5 N 1.46507 * 109.47056 * 179.97438 * 4 3 2 6 6 C 1.36930 * 120.00145 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00048 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99980 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00057 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47321 * 89.99902 * 10 8 6 12 12 H 1.48509 * 109.47052 * 209.99395 * 10 8 6 13 13 H 1.48497 * 109.47059 * 329.99437 * 10 8 6 14 14 C 1.34775 * 120.00341 * 179.97438 * 2 1 3 15 15 O 1.21622 * 119.99822 * 184.53461 * 14 2 1 16 16 C 1.47287 * 119.99882 * 4.52873 * 14 2 1 17 17 C 1.36581 * 127.54075 * 323.63891 * 16 14 2 18 18 O 1.34103 * 108.89325 * 179.97438 * 17 16 14 19 19 C 1.33389 * 111.29486 * 359.50289 * 18 17 16 20 20 C 1.36155 * 108.05039 * 0.91339 * 19 18 17 21 21 C 1.47714 * 122.21514 * 178.95276 * 20 19 18 22 22 O 1.21619 * 122.33105 * 223.69699 * 21 20 19 23 23 N 1.35751 * 115.34031 * 43.67301 * 21 20 19 24 24 C 1.45333 * 119.17838 * 14.07278 * 23 21 20 25 25 C 1.52907 * 113.82364 * 273.93662 * 24 23 21 26 26 C 1.50520 * 128.59972 * 181.00040 * 19 18 17 27 27 H 1.09000 * 109.46999 * 264.82130 * 1 2 3 28 28 H 1.08992 * 109.47418 * 24.82911 * 1 2 3 29 29 H 1.09009 * 109.46743 * 144.83248 * 1 2 3 30 30 H 1.08993 * 109.46905 * 29.99226 * 3 2 1 31 31 H 1.08994 * 109.47270 * 150.00038 * 3 2 1 32 32 H 1.09003 * 109.47336 * 299.99547 * 4 3 2 33 33 H 1.09001 * 109.47640 * 60.00036 * 4 3 2 34 34 H 0.97003 * 119.99926 * 359.97438 * 5 4 3 35 35 H 0.97005 * 119.99707 * 180.02562 * 9 8 6 36 36 H 1.08002 * 125.55500 * 359.95217 * 17 16 14 37 37 H 0.96998 * 120.41131 * 194.04830 * 23 21 20 38 38 H 1.08997 * 108.61273 * 152.82250 * 24 23 21 39 39 H 1.08991 * 108.50515 * 34.98246 * 24 23 21 40 40 H 1.09000 * 109.47317 * 284.33864 * 25 24 23 41 41 H 1.09008 * 109.46123 * 164.35457 * 25 24 23 42 42 H 1.08992 * 109.45749 * 349.16579 * 26 19 18 43 43 H 1.08998 * 109.45383 * 229.19905 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7103 -1.4425 5 7 3.1844 2.9795 -1.4427 6 6 3.5261 3.5726 -2.6286 7 1 3.2565 3.1047 -3.5639 8 6 4.2201 4.7748 -2.6287 9 7 4.5491 5.3448 -1.4888 10 14 4.6857 5.5843 -4.2465 11 1 3.5966 6.4988 -4.6740 12 1 5.9408 6.3582 -4.0696 13 1 4.8900 4.5397 -5.2820 14 6 2.1389 -1.1671 0.0005 15 8 3.3523 -1.1686 0.0838 16 6 1.4060 -2.4408 -0.0996 17 6 0.1938 -2.7488 0.4492 18 8 -0.1228 -4.0103 0.1227 19 6 0.8233 -4.5664 -0.6357 20 6 1.8179 -3.6525 -0.8071 21 6 3.0382 -3.9529 -1.5833 22 8 4.1477 -3.6354 -1.1996 23 7 2.8350 -4.6086 -2.7545 24 6 1.4900 -4.6851 -3.2996 25 6 0.6683 -5.8539 -2.7546 26 6 0.8566 -5.9475 -1.2332 27 1 -0.3633 -0.0928 1.0235 28 1 -0.3634 0.9326 -0.4315 29 1 -0.3633 -0.8402 -0.5920 30 1 1.6083 2.0284 0.5137 31 1 3.1498 1.1386 0.5138 32 1 3.0416 0.9507 -1.9563 33 1 1.5000 1.8406 -1.9565 34 1 3.4262 3.3999 -0.6027 35 1 5.0338 6.1851 -1.4890 36 1 -0.4110 -2.0847 1.0489 37 1 3.5784 -5.0206 -3.2219 38 1 1.5587 -4.7836 -4.3829 39 1 0.9694 -3.7560 -3.0679 40 1 1.0026 -6.7812 -3.2198 41 1 -0.3859 -5.6934 -2.9810 42 1 0.0545 -6.5480 -0.8044 43 1 1.8167 -6.4147 -1.0143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753214073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:09 Heat of formation + Delta-G solvation = -25.785347 kcal Electronic energy + Delta-G solvation = -27371.270330 eV Core-core repulsion = 23419.236078 eV Total energy + Delta-G solvation = -3952.034252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.19168 -39.61854 -39.49492 -36.80812 -35.83370 -34.40379 -33.15170 -33.08354 -31.38327 -30.25048 -28.21188 -26.70572 -26.54611 -24.62684 -23.94179 -22.74798 -21.85193 -21.07799 -20.05960 -18.94570 -17.59254 -17.19591 -17.12989 -16.97129 -16.69608 -15.82657 -15.69468 -15.43336 -15.05727 -14.84095 -14.41370 -14.27798 -13.81194 -13.65346 -13.41307 -13.37038 -13.24772 -13.09418 -12.81424 -12.68106 -12.30859 -12.16378 -11.80882 -11.46019 -11.26359 -10.95798 -10.85396 -10.64143 -10.24559 -10.07384 -10.00520 -9.78403 -9.65130 -9.32939 -8.89000 -8.82852 -8.48386 -6.88524 -5.71459 -3.00563 1.05386 1.29263 2.25102 2.69536 2.88647 3.15455 3.28721 3.47480 3.52454 3.55002 4.03395 4.19429 4.30669 4.33908 4.46700 4.65103 4.68133 4.84695 4.97713 5.00283 5.05713 5.16078 5.19487 5.24130 5.38477 5.46744 5.52041 5.57969 5.60498 5.67435 5.76326 5.87077 6.07847 6.16870 6.53757 6.59184 6.72791 6.78795 6.90356 6.95527 7.49284 7.74647 8.10015 8.34238 8.47125 9.57890 10.14093 10.49528 11.51545 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003042 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.129988 B = 9202.263124 C = 9973.873950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.608 5.608 3 C 0.109 3.891 4 C 0.143 3.857 5 N -0.730 5.730 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.933 5.933 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.572 3.428 15 O -0.497 6.497 16 C -0.166 4.166 17 C 0.001 3.999 18 O -0.158 6.158 19 C 0.033 3.967 20 C -0.193 4.193 21 C 0.586 3.414 22 O -0.486 6.486 23 N -0.733 5.733 24 C 0.105 3.895 25 C -0.134 4.134 26 C -0.041 4.041 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.022 0.978 33 H 0.018 0.982 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.222 0.778 37 H 0.405 0.595 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 -26.341 1.190 31.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C -0.013 4.013 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.358 3.642 15 O -0.371 6.371 16 C -0.172 4.172 17 C -0.067 4.067 18 O -0.053 6.053 19 C -0.019 4.019 20 C -0.198 4.198 21 C 0.372 3.628 22 O -0.357 6.357 23 N -0.388 5.388 24 C -0.020 4.020 25 C -0.173 4.173 26 C -0.078 4.078 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.238 0.762 37 H 0.241 0.759 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.955 -26.164 1.460 30.680 hybrid contribution 0.514 0.704 -0.774 1.166 sum -15.441 -25.460 0.686 29.784 Atomic orbital electron populations 1.22044 0.80128 1.04108 1.01129 1.47654 1.06713 1.06049 1.73850 1.21740 0.97680 0.82624 0.99246 1.20910 0.95087 0.89427 0.93160 1.42203 1.67161 1.21482 1.06618 1.19204 1.29407 1.02277 0.85953 0.91243 1.24749 1.01243 0.98087 0.96935 1.69667 1.45090 1.19531 1.23931 0.86158 0.77661 0.79219 0.82985 1.21725 1.21704 1.20755 1.17244 0.86935 0.82198 0.77795 1.90935 1.12790 1.86449 1.46909 1.20901 0.96183 0.95569 1.04509 1.24842 0.96481 0.83179 1.02230 1.83553 1.42663 1.25358 1.53701 1.22612 0.86700 0.96876 0.95684 1.20942 0.97674 0.94467 1.06752 1.17720 0.87543 0.77122 0.80406 1.90949 1.25679 1.49189 1.69923 1.45702 1.10170 1.58567 1.24369 1.21169 0.83185 0.99025 0.98651 1.22262 1.01526 1.00247 0.93297 1.20296 1.04758 0.87637 0.95134 0.92594 0.89965 0.91160 0.90193 0.89397 0.96038 0.96436 0.78219 0.93494 0.76207 0.75856 0.89635 0.90770 0.89785 0.89632 0.88974 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 9.03 59.85 0.54 1.20 16 2 N -0.61 -9.22 2.87 -182.91 -0.53 -9.75 16 3 C 0.11 1.99 5.53 -4.04 -0.02 1.97 16 4 C 0.14 3.18 6.58 -4.04 -0.03 3.16 16 5 N -0.73 -19.80 5.60 -59.91 -0.34 -20.13 16 6 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 7 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 10 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.57 10.03 7.63 -12.58 -0.10 9.94 16 15 O -0.50 -11.38 15.95 2.26 0.04 -11.35 16 16 C -0.17 -2.28 5.58 -103.61 -0.58 -2.86 16 17 C 0.00 0.01 9.85 30.13 0.30 0.31 16 18 O -0.16 -1.40 10.48 8.61 0.09 -1.31 16 19 C 0.03 0.31 6.35 -35.14 -0.22 0.09 16 20 C -0.19 -2.55 5.04 -103.57 -0.52 -3.08 16 21 C 0.59 8.73 7.64 -11.95 -0.09 8.64 16 22 O -0.49 -9.84 17.31 2.26 0.04 -9.80 16 23 N -0.73 -7.08 5.26 -61.88 -0.33 -7.41 16 24 C 0.11 0.67 6.00 -4.72 -0.03 0.64 16 25 C -0.13 -0.51 6.32 -26.47 -0.17 -0.68 16 26 C -0.04 -0.23 5.65 -27.66 -0.16 -0.38 16 27 H 0.06 0.38 7.38 -51.93 -0.38 -0.01 16 28 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 29 H 0.07 0.56 5.87 -51.92 -0.30 0.26 16 30 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.09 1.80 7.36 -51.93 -0.38 1.42 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.38 10.76 7.67 -40.82 -0.31 10.45 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.22 1.17 6.23 -52.49 -0.33 0.84 16 37 H 0.40 3.25 8.95 -40.82 -0.37 2.88 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.60 6.93 -51.93 -0.36 0.24 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.09 0.23 8.14 -51.92 -0.42 -0.20 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -41.11 357.65 -7.02 -48.13 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.77 Total: 5.29 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -1.32 Total: 11.24 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -0.46 Total: -65.81 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.17 Total: -22.45 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -41.11 -7.02 -48.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753214073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.343 kcal (2) G-P(sol) polarization free energy of solvation -41.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds