Wall clock time and date at job start Tue Mar 31 2020 13:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99734 * 2 1 4 4 C 1.52998 * 109.46504 * 269.99649 * 3 2 1 5 5 N 1.46507 * 109.47056 * 179.97438 * 4 3 2 6 6 C 1.36930 * 120.00145 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00048 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99980 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00057 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47321 * 89.99902 * 10 8 6 12 12 H 1.48509 * 109.47052 * 209.99395 * 10 8 6 13 13 H 1.48497 * 109.47059 * 329.99437 * 10 8 6 14 14 C 1.34775 * 120.00341 * 179.97438 * 2 1 3 15 15 O 1.21622 * 119.99822 * 184.53461 * 14 2 1 16 16 C 1.47287 * 119.99882 * 4.52873 * 14 2 1 17 17 C 1.36581 * 127.54075 * 323.63891 * 16 14 2 18 18 O 1.34103 * 108.89325 * 179.97438 * 17 16 14 19 19 C 1.33389 * 111.29486 * 359.50289 * 18 17 16 20 20 C 1.36155 * 108.05039 * 0.91339 * 19 18 17 21 21 C 1.47714 * 122.21514 * 178.95276 * 20 19 18 22 22 O 1.21619 * 122.33105 * 223.69699 * 21 20 19 23 23 N 1.35751 * 115.34031 * 43.67301 * 21 20 19 24 24 C 1.45333 * 119.17838 * 14.07278 * 23 21 20 25 25 C 1.52907 * 113.82364 * 273.93662 * 24 23 21 26 26 C 1.50520 * 128.59972 * 181.00040 * 19 18 17 27 27 H 1.09000 * 109.46999 * 264.82130 * 1 2 3 28 28 H 1.08992 * 109.47418 * 24.82911 * 1 2 3 29 29 H 1.09009 * 109.46743 * 144.83248 * 1 2 3 30 30 H 1.08993 * 109.46905 * 29.99226 * 3 2 1 31 31 H 1.08994 * 109.47270 * 150.00038 * 3 2 1 32 32 H 1.09003 * 109.47336 * 299.99547 * 4 3 2 33 33 H 1.09001 * 109.47640 * 60.00036 * 4 3 2 34 34 H 0.97003 * 119.99926 * 359.97438 * 5 4 3 35 35 H 0.97005 * 119.99707 * 180.02562 * 9 8 6 36 36 H 1.08002 * 125.55500 * 359.95217 * 17 16 14 37 37 H 0.96998 * 120.41131 * 194.04830 * 23 21 20 38 38 H 1.08997 * 108.61273 * 152.82250 * 24 23 21 39 39 H 1.08991 * 108.50515 * 34.98246 * 24 23 21 40 40 H 1.09000 * 109.47317 * 284.33864 * 25 24 23 41 41 H 1.09008 * 109.46123 * 164.35457 * 25 24 23 42 42 H 1.08992 * 109.45749 * 349.16579 * 26 19 18 43 43 H 1.08998 * 109.45383 * 229.19905 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7103 -1.4425 5 7 3.1844 2.9795 -1.4427 6 6 3.5261 3.5726 -2.6286 7 1 3.2565 3.1047 -3.5639 8 6 4.2201 4.7748 -2.6287 9 7 4.5491 5.3448 -1.4888 10 14 4.6857 5.5843 -4.2465 11 1 3.5966 6.4988 -4.6740 12 1 5.9408 6.3582 -4.0696 13 1 4.8900 4.5397 -5.2820 14 6 2.1389 -1.1671 0.0005 15 8 3.3523 -1.1686 0.0838 16 6 1.4060 -2.4408 -0.0996 17 6 0.1938 -2.7488 0.4492 18 8 -0.1228 -4.0103 0.1227 19 6 0.8233 -4.5664 -0.6357 20 6 1.8179 -3.6525 -0.8071 21 6 3.0382 -3.9529 -1.5833 22 8 4.1477 -3.6354 -1.1996 23 7 2.8350 -4.6086 -2.7545 24 6 1.4900 -4.6851 -3.2996 25 6 0.6683 -5.8539 -2.7546 26 6 0.8566 -5.9475 -1.2332 27 1 -0.3633 -0.0928 1.0235 28 1 -0.3634 0.9326 -0.4315 29 1 -0.3633 -0.8402 -0.5920 30 1 1.6083 2.0284 0.5137 31 1 3.1498 1.1386 0.5138 32 1 3.0416 0.9507 -1.9563 33 1 1.5000 1.8406 -1.9565 34 1 3.4262 3.3999 -0.6027 35 1 5.0338 6.1851 -1.4890 36 1 -0.4110 -2.0847 1.0489 37 1 3.5784 -5.0206 -3.2219 38 1 1.5587 -4.7836 -4.3829 39 1 0.9694 -3.7560 -3.0679 40 1 1.0026 -6.7812 -3.2198 41 1 -0.3859 -5.6934 -2.9810 42 1 0.0545 -6.5480 -0.8044 43 1 1.8167 -6.4147 -1.0143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753214073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:08 Heat of formation + Delta-G solvation = -59.531481 kcal Electronic energy + Delta-G solvation = -27372.733672 eV Core-core repulsion = 23419.236078 eV Total energy + Delta-G solvation = -3953.497594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.99338 -40.80415 -40.56389 -37.66311 -37.43046 -36.18553 -34.21565 -33.81822 -33.25393 -31.20753 -29.74023 -27.79670 -27.22452 -26.12783 -25.16216 -24.13260 -22.99318 -22.20039 -20.89539 -20.08061 -19.23942 -18.45062 -18.12641 -17.92838 -17.48767 -17.21804 -16.79094 -16.51479 -16.22918 -16.09351 -15.48014 -15.31348 -15.22813 -15.14917 -15.06453 -14.53916 -14.29142 -14.14593 -14.03343 -13.63074 -13.17934 -13.09911 -12.89482 -12.80445 -12.67480 -12.48649 -12.37714 -12.17530 -11.92005 -11.81028 -11.35447 -11.17649 -11.02426 -10.91239 -10.15429 -9.78317 -9.67229 -9.12199 -8.01653 -5.33328 0.28800 0.30421 1.42591 1.46573 1.50811 1.55014 1.64967 1.71964 2.10685 2.34410 2.52369 3.28927 3.31443 3.44065 3.56108 3.87210 3.94383 3.94778 4.01125 4.15241 4.17530 4.21167 4.28111 4.36143 4.46297 4.49011 4.63553 4.65087 4.79651 4.82998 4.88735 4.94612 4.98150 5.03200 5.10863 5.20192 5.37114 5.47128 5.75105 5.93653 6.05255 6.19498 6.29893 7.07273 7.14143 7.25501 7.95713 8.22539 9.21758 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003042 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.129988 B = 9202.263124 C = 9973.873950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.603 5.603 3 C 0.123 3.877 4 C 0.151 3.849 5 N -0.742 5.742 6 C -0.255 4.255 7 H 0.071 0.929 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.981 3.019 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.274 1.274 14 C 0.566 3.434 15 O -0.572 6.572 16 C -0.215 4.215 17 C 0.048 3.952 18 O -0.145 6.145 19 C 0.066 3.934 20 C -0.240 4.240 21 C 0.575 3.425 22 O -0.564 6.564 23 N -0.717 5.717 24 C 0.095 3.905 25 C -0.122 4.122 26 C -0.046 4.046 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.055 0.945 32 H -0.014 1.014 33 H 0.036 0.964 34 H 0.376 0.624 35 H 0.255 0.745 36 H 0.266 0.734 37 H 0.411 0.589 38 H 0.111 0.889 39 H 0.056 0.944 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 -28.227 0.300 35.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.336 5.336 3 C 0.000 4.000 4 C 0.023 3.977 5 N -0.386 5.386 6 C -0.387 4.387 7 H 0.089 0.911 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.808 3.192 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.199 1.199 14 C 0.355 3.645 15 O -0.451 6.451 16 C -0.220 4.220 17 C -0.021 4.021 18 O -0.038 6.038 19 C 0.013 3.987 20 C -0.245 4.245 21 C 0.363 3.637 22 O -0.442 6.442 23 N -0.371 5.371 24 C -0.029 4.029 25 C -0.160 4.160 26 C -0.083 4.083 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.004 0.996 33 H 0.054 0.946 34 H 0.209 0.791 35 H 0.063 0.937 36 H 0.281 0.719 37 H 0.248 0.752 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.143 0.857 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.339 -28.109 0.519 34.699 hybrid contribution 1.734 1.201 -0.527 2.174 sum -18.605 -26.908 -0.008 32.713 Atomic orbital electron populations 1.22492 0.76159 1.05411 1.04274 1.47723 1.08985 1.04183 1.72670 1.21377 0.97529 0.84904 0.96220 1.20927 0.94319 0.86613 0.95849 1.42378 1.67727 1.22748 1.05711 1.19579 1.29560 1.02699 0.86833 0.91080 1.25668 1.01349 0.98758 1.00712 1.69827 1.45835 1.19861 1.26187 0.85051 0.77290 0.78176 0.78669 1.20310 1.21812 1.19868 1.17899 0.86395 0.83914 0.76286 1.90891 1.16142 1.87616 1.50460 1.20686 0.98524 0.94431 1.08365 1.25457 0.94317 0.83102 0.99208 1.83638 1.42041 1.25032 1.53085 1.23181 0.84897 0.97198 0.93428 1.21015 0.98516 0.95971 1.09014 1.18230 0.87254 0.76701 0.81535 1.90893 1.28391 1.52759 1.72126 1.45726 1.12157 1.56616 1.22579 1.21519 0.81405 0.99788 1.00196 1.22268 1.02257 0.99872 0.91644 1.20613 1.05846 0.85474 0.96321 0.88476 0.89378 0.89133 0.87364 0.92674 0.99567 0.94627 0.79142 0.93658 0.71905 0.75207 0.87059 0.92533 0.87192 0.87249 0.85709 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 9.03 127.77 1.15 2.07 16 2 N -0.60 -18.32 2.87 -850.84 -2.44 -20.76 16 3 C 0.12 4.65 5.53 86.38 0.48 5.13 16 4 C 0.15 6.99 6.58 86.38 0.57 7.56 16 5 N -0.74 -41.71 5.60 -343.44 -1.92 -43.63 16 6 C -0.26 -15.44 9.99 84.03 0.84 -14.60 16 7 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 8 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 9 N -0.97 -61.79 13.06 21.65 0.28 -61.51 16 10 Si 0.98 48.23 29.55 68.60 2.03 50.25 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 13 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 14 C 0.57 20.91 7.63 86.62 0.66 21.57 16 15 O -0.57 -28.89 15.95 -1.23 -0.02 -28.91 16 16 C -0.22 -5.88 5.58 -19.21 -0.11 -5.99 16 17 C 0.05 0.71 9.85 67.43 0.66 1.37 16 18 O -0.14 -1.97 10.48 7.90 0.08 -1.88 16 19 C 0.07 1.06 6.35 25.14 0.16 1.22 16 20 C -0.24 -6.44 5.04 -19.18 -0.10 -6.54 16 21 C 0.58 18.45 7.64 86.59 0.66 19.11 16 22 O -0.56 -25.48 17.31 -1.22 -0.02 -25.50 16 23 N -0.72 -14.18 5.26 -467.37 -2.46 -16.64 16 24 C 0.09 1.02 6.00 86.57 0.52 1.54 16 25 C -0.12 -0.42 6.32 30.76 0.19 -0.22 16 26 C -0.05 -0.34 5.65 29.99 0.17 -0.17 16 27 H 0.10 0.82 7.38 -2.39 -0.02 0.80 16 28 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 29 H 0.09 1.11 5.87 -2.38 -0.01 1.09 16 30 H 0.11 3.45 8.07 -2.39 -0.02 3.43 16 31 H 0.05 2.45 7.36 -2.39 -0.02 2.43 16 32 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.38 21.97 7.67 -92.71 -0.71 21.25 16 35 H 0.25 15.58 8.31 -92.70 -0.77 14.81 16 36 H 0.27 1.31 6.23 -2.91 -0.02 1.29 16 37 H 0.41 6.88 8.95 -92.71 -0.83 6.05 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.84 6.93 -2.39 -0.02 0.82 16 40 H 0.11 -0.08 8.14 -2.39 -0.02 -0.09 16 41 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 42 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.09 0.85 8.04 -2.39 -0.02 0.83 16 Total: -1.00 -100.20 357.65 1.38 -98.81 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -0.47 Total: 21.63 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 6.33 Total: 28.14 kcal Atomic # 7 Polarization: -135.99 SS G_CDS: -6.55 Total: -142.54 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: 0.04 Total: -56.30 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.25 kcal Total: -100.20 1.38 -98.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753214073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.282 kcal (2) G-P(sol) polarization free energy of solvation -100.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds