Wall clock time and date at job start Tue Mar 31 2020 13:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35527 * 117.00324 * 2 1 4 4 C 1.38822 * 120.89123 * 0.27811 * 3 2 1 5 5 C 1.38711 * 119.19615 * 180.28176 * 4 3 2 6 6 O 1.35521 * 119.47148 * 179.70667 * 5 4 3 7 7 N 1.32586 * 121.05502 * 359.42255 * 5 4 3 8 8 C 1.31610 * 121.97530 * 0.28386 * 7 5 4 9 9 C 1.39542 * 120.67195 * 0.02562 * 8 7 5 10 10 C 1.47345 * 120.55432 * 180.02562 * 9 8 7 11 11 O 1.21616 * 119.99637 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00403 * 359.97438 * 10 9 8 13 13 C 1.46494 * 120.00182 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47523 * 325.00035 * 13 12 10 15 15 C 1.53007 * 109.47156 * 205.00100 * 13 12 10 16 16 N 1.46504 * 109.46875 * 55.00106 * 15 13 12 17 17 C 1.36934 * 119.99889 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00291 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00321 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99351 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00417 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47298 * 60.00035 * 21 19 17 23 23 H 1.48504 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47252 * 300.00021 * 21 19 17 25 25 C 1.53001 * 109.47474 * 85.00478 * 13 12 10 26 26 C 1.53005 * 117.49627 * 8.74191 * 25 13 12 27 27 C 1.53003 * 117.49225 * 300.08644 * 25 13 12 28 28 H 1.09002 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47541 * 299.99837 * 1 2 3 30 30 H 1.09004 * 109.46899 * 60.00308 * 1 2 3 31 31 H 1.08002 * 120.39989 * 0.02562 * 4 3 2 32 32 H 0.96700 * 114.00053 * 269.72646 * 6 5 4 33 33 H 1.08011 * 119.66437 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99480 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.47172 * 174.99895 * 15 13 12 36 36 H 1.08998 * 109.47282 * 294.99911 * 15 13 12 37 37 H 0.96995 * 120.00264 * 359.97438 * 16 15 13 38 38 H 0.97008 * 119.99628 * 180.02562 * 20 19 17 39 39 H 1.08992 * 115.55342 * 154.41620 * 25 13 12 40 40 H 1.08998 * 117.49571 * 0.02562 * 26 25 13 41 41 H 1.08994 * 117.49420 * 145.02436 * 26 25 13 42 42 H 1.08997 * 117.49612 * 214.97666 * 27 25 13 43 43 H 1.09000 * 117.49879 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3065 2.3834 0.0058 5 6 1.9725 3.6002 -0.0004 6 8 1.2578 4.7515 -0.0008 7 7 3.2973 3.6547 -0.0002 8 6 4.0396 2.5679 0.0002 9 6 3.4500 1.3032 0.0000 10 6 4.2835 0.0882 0.0010 11 8 3.7589 -1.0090 0.0013 12 7 5.6272 0.1927 0.0017 13 6 6.4559 -1.0153 0.0022 14 1 5.9670 -1.7911 0.5914 15 6 7.8222 -0.6963 0.6126 16 7 7.6381 -0.1137 1.9441 17 6 8.7280 0.2537 2.6873 18 1 9.7232 0.1142 2.2918 19 6 8.5537 0.8062 3.9487 20 7 7.3407 0.9766 4.4305 21 14 10.0403 1.3080 4.9623 22 1 10.8182 2.3357 4.2249 23 1 9.5878 1.8668 6.2616 24 1 10.8969 0.1197 5.2065 25 6 6.6416 -1.5071 -1.4347 26 6 6.1495 -0.5970 -2.5619 27 6 5.3835 -1.8781 -2.2224 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2270 2.3513 0.0108 32 1 1.0504 5.0854 -0.8843 33 1 5.1161 2.6559 0.0000 34 1 6.0455 1.0679 0.0019 35 1 8.4064 -1.6129 0.6947 36 1 8.3482 0.0139 -0.0253 37 1 6.7443 0.0119 2.2992 38 1 7.2188 1.3631 5.3119 39 1 7.5416 -2.0938 -1.6181 40 1 5.6939 0.3521 -2.2798 41 1 6.7256 -0.5854 -3.4871 42 1 5.4560 -2.7087 -2.9244 43 1 4.4236 -1.7722 -1.7168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754451709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:47 Heat of formation + Delta-G solvation = -23.360824 kcal Electronic energy + Delta-G solvation = -27606.180005 eV Core-core repulsion = 23654.250889 eV Total energy + Delta-G solvation = -3951.929116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17843 -39.66385 -38.87877 -37.22945 -36.69917 -34.87044 -33.31036 -31.79273 -31.40900 -30.47249 -28.22018 -27.56694 -24.50613 -23.95099 -23.13270 -22.20730 -21.47074 -21.04843 -19.70638 -19.43050 -17.96021 -17.57906 -17.18574 -16.85168 -16.20906 -15.82100 -15.60747 -15.37955 -15.02992 -14.73042 -14.52315 -14.26448 -13.64400 -13.52477 -13.25141 -13.08308 -12.86782 -12.70529 -12.17485 -12.04938 -11.80391 -11.72042 -11.59596 -11.31835 -11.17780 -10.87590 -10.78687 -10.23676 -10.13122 -9.96867 -9.76905 -9.55138 -9.38457 -9.32732 -9.00627 -8.89242 -8.59241 -6.94631 -5.75900 -3.06028 0.44844 1.06627 2.85456 2.88064 3.34755 3.37665 3.45163 3.49560 3.50771 3.74741 4.09437 4.32914 4.52106 4.58230 4.67651 4.82371 4.88639 4.95171 5.09219 5.21563 5.22170 5.22580 5.25135 5.36411 5.51361 5.56424 5.64274 5.81939 5.87744 6.04521 6.05366 6.08464 6.25848 6.35138 6.50477 6.57061 6.71428 6.91206 6.96258 7.19432 7.68792 7.69600 7.83712 8.41631 8.52801 9.53533 10.09121 10.44441 11.46187 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010465 B = 0.004250 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.825712 B = 6586.977181 C = 8145.714062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.268 6.268 3 C 0.237 3.763 4 C -0.292 4.292 5 C 0.366 3.634 6 O -0.480 6.480 7 N -0.526 5.526 8 C 0.203 3.797 9 C -0.227 4.227 10 C 0.569 3.431 11 O -0.520 6.520 12 N -0.705 5.705 13 C 0.170 3.830 14 H 0.093 0.907 15 C 0.148 3.852 16 N -0.732 5.732 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.160 4.160 26 C -0.178 4.178 27 C -0.187 4.187 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.150 0.850 32 H 0.404 0.596 33 H 0.174 0.826 34 H 0.402 0.598 35 H 0.035 0.965 36 H 0.027 0.973 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.882 1.507 -15.726 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.176 6.176 3 C 0.181 3.819 4 C -0.314 4.314 5 C 0.189 3.811 6 O -0.287 6.287 7 N -0.248 5.248 8 C 0.044 3.956 9 C -0.234 4.234 10 C 0.355 3.645 11 O -0.398 6.398 12 N -0.357 5.357 13 C 0.066 3.934 14 H 0.111 0.889 15 C 0.020 3.980 16 N -0.377 5.377 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.179 4.179 26 C -0.215 4.215 27 C -0.224 4.224 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.262 0.738 33 H 0.191 0.809 34 H 0.238 0.762 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.675 1.283 -15.047 20.373 hybrid contribution 0.046 0.311 0.358 0.476 sum -13.629 1.594 -14.689 20.101 Atomic orbital electron populations 1.23257 0.78167 1.04787 1.01494 1.86396 1.21217 1.24546 1.85484 1.19114 0.90848 0.84821 0.87161 1.22050 1.02078 0.91686 1.15585 1.18998 0.86669 0.84913 0.90560 1.84722 1.71260 1.38772 1.33983 1.67210 1.06332 1.33279 1.18022 1.22751 1.00010 0.84886 0.87944 1.20561 0.91417 0.96221 1.15177 1.17546 0.82188 0.87957 0.76795 1.90747 1.72805 1.27053 1.49185 1.45868 1.05178 1.10440 1.74219 1.20761 0.92201 0.86963 0.93508 0.88941 1.20921 0.92102 0.97038 0.87981 1.42345 1.06986 1.74630 1.13706 1.19156 0.87337 1.33959 0.97050 0.91172 1.24742 0.96406 1.01853 0.97665 1.69661 1.19535 1.50121 1.18516 0.86274 0.81998 0.78288 0.79624 1.21237 1.21741 1.21293 1.22697 0.98759 1.03855 0.92618 1.22877 1.04438 0.95379 0.98789 1.23342 0.98029 0.97911 1.03094 0.87493 0.92159 0.92371 0.83270 0.73754 0.80920 0.76203 0.94772 0.95537 0.77986 0.93431 0.87252 0.89109 0.89559 0.89849 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.14 16 2 O -0.27 -3.67 8.71 -39.57 -0.34 -4.01 16 3 C 0.24 3.25 6.74 -38.36 -0.26 2.99 16 4 C -0.29 -3.30 9.02 -39.19 -0.35 -3.65 16 5 C 0.37 4.51 7.73 -17.05 -0.13 4.38 16 6 O -0.48 -4.80 13.54 -18.26 -0.25 -5.05 16 7 N -0.53 -7.47 10.36 -13.04 -0.14 -7.60 16 8 C 0.20 2.82 10.71 -17.16 -0.18 2.63 16 9 C -0.23 -3.39 5.90 -104.70 -0.62 -4.01 16 10 C 0.57 9.50 6.60 -12.56 -0.08 9.41 16 11 O -0.52 -9.92 12.31 -16.04 -0.20 -10.11 16 12 N -0.71 -11.18 3.01 -54.91 -0.17 -11.35 16 13 C 0.17 2.84 2.59 -67.93 -0.18 2.67 16 14 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 15 C 0.15 2.83 5.80 -4.04 -0.02 2.80 16 16 N -0.73 -17.91 5.43 -59.90 -0.33 -18.23 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 C -0.16 -2.24 5.71 -90.61 -0.52 -2.76 16 26 C -0.18 -2.26 9.74 -26.69 -0.26 -2.52 16 27 C -0.19 -2.59 9.82 -26.69 -0.26 -2.85 16 28 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 30 H 0.06 0.36 7.72 -51.93 -0.40 -0.04 16 31 H 0.15 1.24 6.45 -52.49 -0.34 0.90 16 32 H 0.40 1.75 9.06 45.56 0.41 2.16 16 33 H 0.17 2.13 6.41 -52.48 -0.34 1.79 16 34 H 0.40 5.99 6.65 -40.82 -0.27 5.72 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.39 10.14 7.33 -40.82 -0.30 9.84 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.11 1.41 8.11 -51.93 -0.42 0.99 16 40 H 0.09 1.17 6.67 -51.93 -0.35 0.83 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.12 1.90 5.01 -51.93 -0.26 1.64 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -35.09 358.52 -7.14 -42.24 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -4.71 Total: 15.77 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.12 Total: 3.01 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.10 Total: -64.52 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.79 Total: -19.17 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.09 -7.14 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754451709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.878 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds