Wall clock time and date at job start Tue Mar 31 2020 13:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35527 * 117.00324 * 2 1 4 4 C 1.38822 * 120.89123 * 0.27811 * 3 2 1 5 5 C 1.38711 * 119.19615 * 180.28176 * 4 3 2 6 6 O 1.35521 * 119.47148 * 179.70667 * 5 4 3 7 7 N 1.32586 * 121.05502 * 359.42255 * 5 4 3 8 8 C 1.31610 * 121.97530 * 0.28386 * 7 5 4 9 9 C 1.39542 * 120.67195 * 0.02562 * 8 7 5 10 10 C 1.47345 * 120.55432 * 180.02562 * 9 8 7 11 11 O 1.21616 * 119.99637 * 179.97438 * 10 9 8 12 12 N 1.34772 * 120.00403 * 359.97438 * 10 9 8 13 13 C 1.46494 * 120.00182 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47523 * 325.00035 * 13 12 10 15 15 C 1.53007 * 109.47156 * 205.00100 * 13 12 10 16 16 N 1.46504 * 109.46875 * 55.00106 * 15 13 12 17 17 C 1.36934 * 119.99889 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00291 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00321 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99351 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00417 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47298 * 60.00035 * 21 19 17 23 23 H 1.48504 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47252 * 300.00021 * 21 19 17 25 25 C 1.53001 * 109.47474 * 85.00478 * 13 12 10 26 26 C 1.53005 * 117.49627 * 8.74191 * 25 13 12 27 27 C 1.53003 * 117.49225 * 300.08644 * 25 13 12 28 28 H 1.09002 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47541 * 299.99837 * 1 2 3 30 30 H 1.09004 * 109.46899 * 60.00308 * 1 2 3 31 31 H 1.08002 * 120.39989 * 0.02562 * 4 3 2 32 32 H 0.96700 * 114.00053 * 269.72646 * 6 5 4 33 33 H 1.08011 * 119.66437 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99480 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.47172 * 174.99895 * 15 13 12 36 36 H 1.08998 * 109.47282 * 294.99911 * 15 13 12 37 37 H 0.96995 * 120.00264 * 359.97438 * 16 15 13 38 38 H 0.97008 * 119.99628 * 180.02562 * 20 19 17 39 39 H 1.08992 * 115.55342 * 154.41620 * 25 13 12 40 40 H 1.08998 * 117.49571 * 0.02562 * 26 25 13 41 41 H 1.08994 * 117.49420 * 145.02436 * 26 25 13 42 42 H 1.08997 * 117.49612 * 214.97666 * 27 25 13 43 43 H 1.09000 * 117.49879 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3065 2.3834 0.0058 5 6 1.9725 3.6002 -0.0004 6 8 1.2578 4.7515 -0.0008 7 7 3.2973 3.6547 -0.0002 8 6 4.0396 2.5679 0.0002 9 6 3.4500 1.3032 0.0000 10 6 4.2835 0.0882 0.0010 11 8 3.7589 -1.0090 0.0013 12 7 5.6272 0.1927 0.0017 13 6 6.4559 -1.0153 0.0022 14 1 5.9670 -1.7911 0.5914 15 6 7.8222 -0.6963 0.6126 16 7 7.6381 -0.1137 1.9441 17 6 8.7280 0.2537 2.6873 18 1 9.7232 0.1142 2.2918 19 6 8.5537 0.8062 3.9487 20 7 7.3407 0.9766 4.4305 21 14 10.0403 1.3080 4.9623 22 1 10.8182 2.3357 4.2249 23 1 9.5878 1.8668 6.2616 24 1 10.8969 0.1197 5.2065 25 6 6.6416 -1.5071 -1.4347 26 6 6.1495 -0.5970 -2.5619 27 6 5.3835 -1.8781 -2.2224 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2270 2.3513 0.0108 32 1 1.0504 5.0854 -0.8843 33 1 5.1161 2.6559 0.0000 34 1 6.0455 1.0679 0.0019 35 1 8.4064 -1.6129 0.6947 36 1 8.3482 0.0139 -0.0253 37 1 6.7443 0.0119 2.2992 38 1 7.2188 1.3631 5.3119 39 1 7.5416 -2.0938 -1.6181 40 1 5.6939 0.3521 -2.2798 41 1 6.7256 -0.5854 -3.4871 42 1 5.4560 -2.7087 -2.9244 43 1 4.4236 -1.7722 -1.7168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754451709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:47 Heat of formation + Delta-G solvation = -51.006971 kcal Electronic energy + Delta-G solvation = -27607.378832 eV Core-core repulsion = 23654.250889 eV Total energy + Delta-G solvation = -3953.127943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.20299 -40.86999 -39.78695 -38.34107 -37.75522 -36.51676 -34.82067 -33.20067 -32.69071 -31.71309 -29.67657 -28.43652 -26.04207 -25.35141 -24.11141 -23.42718 -22.94413 -22.21941 -20.92661 -20.34191 -19.39084 -18.84466 -18.49816 -17.89410 -17.30724 -16.94945 -16.87516 -16.55241 -16.27396 -15.97955 -15.61493 -15.40255 -15.17218 -15.04593 -14.73142 -14.44739 -14.10625 -13.71442 -13.55063 -13.10137 -12.98509 -12.80431 -12.68149 -12.64839 -12.55563 -12.47825 -12.27584 -12.11032 -11.81168 -11.33253 -11.07554 -10.93929 -10.78507 -10.52112 -10.27001 -10.09345 -9.85400 -8.98473 -7.91547 -5.21014 -0.55709 0.07864 1.49989 1.52540 1.58531 1.75017 2.02127 2.13905 2.46318 2.58248 2.66086 2.99016 3.39736 3.42981 3.55674 3.64611 3.69650 4.00512 4.08883 4.13786 4.18773 4.22275 4.32056 4.33424 4.38426 4.45032 4.54258 4.62699 4.68724 4.71118 4.86905 4.92403 5.09355 5.16533 5.18877 5.30234 5.44020 5.53226 5.60388 6.08078 6.28511 6.50523 6.57064 6.75067 7.25651 7.36338 8.10125 8.33733 9.31243 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010465 B = 0.004250 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.825712 B = 6586.977181 C = 8145.714062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.298 6.298 3 C 0.229 3.771 4 C -0.279 4.279 5 C 0.368 3.632 6 O -0.482 6.482 7 N -0.549 5.549 8 C 0.204 3.796 9 C -0.252 4.252 10 C 0.568 3.432 11 O -0.550 6.550 12 N -0.701 5.701 13 C 0.180 3.820 14 H 0.062 0.938 15 C 0.150 3.850 16 N -0.743 5.743 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.300 1.300 24 H -0.280 1.280 25 C -0.165 4.165 26 C -0.161 4.161 27 C -0.190 4.190 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.183 0.817 32 H 0.429 0.571 33 H 0.180 0.820 34 H 0.406 0.594 35 H 0.039 0.961 36 H 0.043 0.957 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.957 2.212 -17.275 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.206 6.206 3 C 0.173 3.827 4 C -0.301 4.301 5 C 0.192 3.808 6 O -0.294 6.294 7 N -0.272 5.272 8 C 0.045 3.955 9 C -0.259 4.259 10 C 0.356 3.644 11 O -0.430 6.430 12 N -0.353 5.353 13 C 0.075 3.925 14 H 0.080 0.920 15 C 0.024 3.976 16 N -0.386 5.386 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.265 4.265 20 N -0.620 5.620 21 Si 0.801 3.199 22 H -0.201 1.201 23 H -0.227 1.227 24 H -0.206 1.206 25 C -0.184 4.184 26 C -0.199 4.199 27 C -0.226 4.226 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.200 0.800 32 H 0.292 0.708 33 H 0.197 0.803 34 H 0.243 0.757 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.206 0.794 38 H 0.057 0.943 39 H 0.144 0.856 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.741 1.996 -16.664 21.691 hybrid contribution -0.043 0.086 0.768 0.774 sum -13.783 2.082 -15.896 21.142 Atomic orbital electron populations 1.23602 0.75600 1.06246 1.03226 1.86362 1.24023 1.24925 1.85322 1.19290 0.90677 0.85731 0.87001 1.22253 1.03466 0.90268 1.14131 1.19196 0.86321 0.85947 0.89379 1.84674 1.70633 1.37874 1.36242 1.67240 1.07519 1.33296 1.19124 1.22798 1.00406 0.84621 0.87687 1.20517 0.92205 0.95636 1.17510 1.17827 0.82297 0.88267 0.76034 1.90722 1.73291 1.28277 1.50706 1.45800 1.05102 1.10335 1.74055 1.20507 0.90565 0.86525 0.94889 0.91962 1.21049 0.93742 0.97001 0.85857 1.42523 1.05782 1.74860 1.15451 1.19599 0.88423 1.32235 0.97167 0.90178 1.25529 0.98858 1.02982 0.99128 1.69835 1.21652 1.51944 1.18545 0.85237 0.78929 0.78122 0.77599 1.20069 1.22699 1.20583 1.22616 0.99656 1.05054 0.91087 1.22951 1.03461 0.94585 0.98859 1.23268 0.96671 0.99436 1.03268 0.86376 0.91020 0.89891 0.80027 0.70811 0.80341 0.75707 0.94334 0.93923 0.79439 0.94253 0.85568 0.89549 0.87143 0.88010 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.84 113.37 1.12 1.22 16 2 O -0.30 -8.11 8.71 -67.94 -0.59 -8.71 16 3 C 0.23 6.24 6.74 23.06 0.16 6.39 16 4 C -0.28 -5.84 9.02 22.52 0.20 -5.64 16 5 C 0.37 8.53 7.73 84.69 0.65 9.18 16 6 O -0.48 -8.52 13.54 -88.24 -1.20 -9.72 16 7 N -0.55 -15.28 10.36 -307.95 -3.19 -18.47 16 8 C 0.20 5.73 10.71 85.04 0.91 6.64 16 9 C -0.25 -7.69 5.90 -19.92 -0.12 -7.81 16 10 C 0.57 19.68 6.60 86.64 0.57 20.25 16 11 O -0.55 -21.93 12.31 16.28 0.20 -21.73 16 12 N -0.70 -22.80 3.01 -445.89 -1.34 -24.14 16 13 C 0.18 6.09 2.59 45.00 0.12 6.20 16 14 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 15 C 0.15 5.69 5.80 86.38 0.50 6.19 16 16 N -0.74 -36.72 5.43 -343.44 -1.87 -38.58 16 17 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 18 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 20 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 21 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 C -0.16 -4.46 5.71 -10.79 -0.06 -4.52 16 26 C -0.16 -3.84 9.74 30.62 0.30 -3.54 16 27 C -0.19 -5.10 9.82 30.62 0.30 -4.80 16 28 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 0.90 7.69 -2.39 -0.02 0.89 16 30 H 0.08 0.82 7.72 -2.39 -0.02 0.80 16 31 H 0.18 2.45 6.45 -2.91 -0.02 2.43 16 32 H 0.43 2.54 9.06 -74.06 -0.67 1.86 16 33 H 0.18 4.53 6.41 -2.91 -0.02 4.51 16 34 H 0.41 12.37 6.65 -92.71 -0.62 11.75 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.37 20.21 7.33 -92.71 -0.68 19.53 16 38 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 39 H 0.13 3.00 8.11 -2.39 -0.02 2.98 16 40 H 0.09 2.15 6.67 -2.39 -0.02 2.13 16 41 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 43 H 0.09 3.04 5.01 -2.39 -0.01 3.03 16 Total: -1.00 -76.49 358.52 -0.60 -77.08 By element: Atomic # 1 Polarization: 42.83 SS G_CDS: -0.88 Total: 41.96 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.95 Total: 13.72 kcal Atomic # 7 Polarization: -134.51 SS G_CDS: -6.12 Total: -140.62 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.59 Total: -40.16 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.49 -0.60 -77.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754451709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.077 kcal (2) G-P(sol) polarization free energy of solvation -76.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds