Wall clock time and date at job start Tue Mar 31 2020 13:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35529 * 116.99812 * 2 1 4 4 C 1.38819 * 120.89293 * 359.97438 * 3 2 1 5 5 C 1.38708 * 119.19700 * 179.69874 * 4 3 2 6 6 O 1.35518 * 119.47659 * 180.30150 * 5 4 3 7 7 N 1.32602 * 121.05515 * 0.27840 * 5 4 3 8 8 C 1.31614 * 121.97312 * 359.97438 * 7 5 4 9 9 C 1.39547 * 120.67160 * 0.02850 * 8 7 5 10 10 C 1.47341 * 120.55620 * 179.97438 * 9 8 7 11 11 O 1.21613 * 119.99980 * 179.97438 * 10 9 8 12 12 N 1.34771 * 119.99889 * 359.97438 * 10 9 8 13 13 C 1.46497 * 120.00198 * 179.97438 * 12 10 9 14 14 H 1.09009 * 109.47035 * 35.00370 * 13 12 10 15 15 C 1.53001 * 109.47577 * 155.00032 * 13 12 10 16 16 N 1.46508 * 109.46724 * 305.00339 * 15 13 12 17 17 C 1.36933 * 119.99544 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00267 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99519 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46974 * 60.00570 * 21 19 17 23 23 H 1.48500 * 109.46843 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47236 * 300.00505 * 21 19 17 25 25 C 1.53000 * 109.47470 * 275.00420 * 13 12 10 26 26 C 1.52997 * 117.50078 * 128.74154 * 25 13 12 27 27 C 1.52997 * 117.49752 * 60.08368 * 25 13 12 28 28 H 1.09007 * 109.46850 * 299.99807 * 1 2 3 29 29 H 1.09001 * 109.47083 * 59.99857 * 1 2 3 30 30 H 1.08994 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.40618 * 359.97438 * 4 3 2 32 32 H 0.96701 * 114.00311 * 89.99890 * 6 5 4 33 33 H 1.08000 * 119.66050 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99931 * 0.02562 * 12 10 9 35 35 H 1.08996 * 109.47039 * 64.99808 * 15 13 12 36 36 H 1.09000 * 109.47465 * 185.00415 * 15 13 12 37 37 H 0.96994 * 119.99890 * 359.97438 * 16 15 13 38 38 H 0.96995 * 119.99176 * 179.97438 * 20 19 17 39 39 H 1.09001 * 115.54906 * 274.41855 * 25 13 12 40 40 H 1.09000 * 117.50189 * 0.02562 * 26 25 13 41 41 H 1.09000 * 117.49761 * 145.01991 * 26 25 13 42 42 H 1.09000 * 117.49732 * 214.98120 * 27 25 13 43 43 H 1.09006 * 117.50196 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3834 -0.0005 5 6 1.9724 3.6002 0.0059 6 8 1.2577 4.7515 0.0116 7 7 3.2973 3.6548 0.0069 8 6 4.0397 2.5680 0.0025 9 6 3.4501 1.3032 -0.0041 10 6 4.2835 0.0883 -0.0096 11 8 3.7590 -1.0089 -0.0149 12 7 5.6272 0.1929 -0.0088 13 6 6.4560 -1.0151 -0.0137 14 1 5.9675 -1.7885 -0.6067 15 6 7.8227 -0.6936 -0.6216 16 7 7.6397 -0.1052 -1.9508 17 6 8.7302 0.2662 -2.6911 18 1 9.7251 0.1250 -2.2953 19 6 8.5569 0.8232 -3.9507 20 7 7.3444 0.9947 -4.4332 21 14 10.0445 1.3292 -4.9609 22 1 10.9018 0.1421 -5.2085 23 1 9.5932 1.8924 -6.2587 24 1 10.8212 2.3545 -4.2189 25 6 6.6404 -1.5130 1.4212 26 6 6.3295 -2.9841 1.7040 27 6 5.3820 -1.8913 2.2049 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2269 2.3514 -0.0014 32 1 1.0500 5.0812 0.8966 33 1 5.1161 2.6560 0.0031 34 1 6.0455 1.0680 -0.0042 35 1 8.3482 0.0140 0.0197 36 1 8.4071 -1.6097 -0.7071 37 1 6.7462 0.0212 -2.3063 38 1 7.2234 1.3843 -5.3133 39 1 7.4602 -1.0562 1.9756 40 1 5.9940 -3.5975 0.8677 41 1 6.9446 -3.4952 2.4447 42 1 5.3741 -1.6838 3.2749 43 1 4.4226 -1.7851 1.6984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754451710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:50 Heat of formation + Delta-G solvation = -27.730182 kcal Electronic energy + Delta-G solvation = -27421.714851 eV Core-core repulsion = 23469.596265 eV Total energy + Delta-G solvation = -3952.118586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14038 -39.48699 -38.86080 -37.25191 -36.71615 -34.97632 -33.40198 -31.77237 -31.36560 -30.47679 -28.15057 -27.51019 -24.50640 -23.88799 -23.11059 -22.11447 -21.48603 -20.93299 -20.01789 -19.45435 -17.94664 -17.58734 -17.16605 -16.79019 -16.15514 -15.87180 -15.41793 -15.08858 -15.01837 -14.91074 -14.57734 -14.30244 -13.71017 -13.62094 -13.12878 -13.07504 -12.84126 -12.74316 -12.16256 -12.08092 -11.79376 -11.70509 -11.62915 -11.19778 -10.99459 -10.88074 -10.77678 -10.19546 -10.13563 -9.99307 -9.87316 -9.65503 -9.36973 -9.30739 -8.99270 -8.89191 -8.56326 -6.94789 -5.75925 -3.06092 0.46557 1.07975 2.86910 2.89932 3.32686 3.38610 3.45116 3.49565 3.50787 3.76062 4.15763 4.34332 4.54943 4.57703 4.70431 4.83260 4.89257 4.92722 5.10707 5.20907 5.23114 5.24009 5.32105 5.37669 5.45777 5.56487 5.63902 5.82859 5.88492 5.94166 6.09726 6.12328 6.25719 6.39950 6.50877 6.56843 6.70109 6.92287 6.97544 7.20554 7.69566 7.70259 7.87214 8.41612 8.55888 9.53490 10.08967 10.44388 11.46191 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004304 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.283050 B = 6504.016201 C = 8405.942520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.269 6.269 3 C 0.236 3.764 4 C -0.292 4.292 5 C 0.365 3.635 6 O -0.480 6.480 7 N -0.527 5.527 8 C 0.203 3.797 9 C -0.226 4.226 10 C 0.570 3.430 11 O -0.524 6.524 12 N -0.704 5.704 13 C 0.171 3.829 14 H 0.089 0.911 15 C 0.148 3.852 16 N -0.732 5.732 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.163 4.163 26 C -0.171 4.171 27 C -0.185 4.185 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.404 0.596 33 H 0.174 0.826 34 H 0.401 0.599 35 H 0.025 0.975 36 H 0.036 0.964 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.835 0.884 15.607 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.177 6.177 3 C 0.180 3.820 4 C -0.314 4.314 5 C 0.188 3.812 6 O -0.288 6.288 7 N -0.249 5.249 8 C 0.044 3.956 9 C -0.232 4.232 10 C 0.357 3.643 11 O -0.402 6.402 12 N -0.355 5.355 13 C 0.066 3.934 14 H 0.107 0.893 15 C 0.020 3.980 16 N -0.377 5.377 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.182 4.182 26 C -0.209 4.209 27 C -0.222 4.222 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.167 0.833 32 H 0.262 0.738 33 H 0.191 0.809 34 H 0.237 0.763 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.624 0.672 14.925 20.220 hybrid contribution 0.047 0.333 -0.342 0.479 sum -13.577 1.005 14.583 19.950 Atomic orbital electron populations 1.23257 0.78198 1.04762 1.01487 1.86400 1.21188 1.24556 1.85512 1.19117 0.90858 0.84806 0.87217 1.22046 1.02059 0.91691 1.15620 1.18999 0.86675 0.84888 0.90630 1.84719 1.71267 1.38844 1.33926 1.67220 1.06325 1.33292 1.18047 1.22758 1.00025 0.84872 0.87900 1.20565 0.91392 0.96252 1.15023 1.17519 0.82186 0.87906 0.76712 1.90734 1.72849 1.27090 1.49519 1.45841 1.05127 1.10341 1.74151 1.20810 0.92254 0.87130 0.93196 0.89270 1.20926 0.92081 0.96952 0.88062 1.42346 1.06997 1.74317 1.14013 1.19159 0.87329 1.33802 0.97239 0.91164 1.24745 0.96413 1.01838 0.97663 1.69658 1.19571 1.49993 1.18603 0.86274 0.82004 0.78298 0.79612 1.21289 1.21734 1.21227 1.22652 1.00081 0.98290 0.97221 1.22888 1.03429 0.91165 1.03380 1.23266 0.96496 1.03201 0.99225 0.92384 0.92165 0.87516 0.83292 0.73773 0.80883 0.76312 0.95683 0.94638 0.77983 0.93422 0.87868 0.88742 0.89289 0.90021 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.14 16 2 O -0.27 -3.68 8.71 -39.58 -0.34 -4.03 16 3 C 0.24 3.26 6.74 -38.36 -0.26 3.00 16 4 C -0.29 -3.32 9.02 -39.19 -0.35 -3.67 16 5 C 0.37 4.53 7.73 -17.05 -0.13 4.40 16 6 O -0.48 -4.83 13.54 -18.25 -0.25 -5.08 16 7 N -0.53 -7.52 10.37 -13.04 -0.14 -7.66 16 8 C 0.20 2.84 10.71 -17.16 -0.18 2.66 16 9 C -0.23 -3.40 5.90 -104.70 -0.62 -4.02 16 10 C 0.57 9.63 7.10 -12.56 -0.09 9.54 16 11 O -0.52 -10.02 12.30 -16.03 -0.20 -10.22 16 12 N -0.70 -11.31 4.45 -54.91 -0.24 -11.56 16 13 C 0.17 2.87 2.43 -67.93 -0.17 2.70 16 14 H 0.09 1.71 7.33 -51.92 -0.38 1.33 16 15 C 0.15 2.85 5.80 -4.04 -0.02 2.83 16 16 N -0.73 -17.98 5.43 -59.90 -0.33 -18.30 16 17 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 21 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C -0.16 -2.30 5.36 -90.62 -0.49 -2.78 16 26 C -0.17 -2.26 10.18 -26.70 -0.27 -2.53 16 27 C -0.18 -2.56 9.73 -26.70 -0.26 -2.82 16 28 H 0.06 0.36 7.71 -51.93 -0.40 -0.04 16 29 H 0.06 0.44 7.70 -51.93 -0.40 0.04 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.15 1.24 6.45 -52.49 -0.34 0.91 16 32 H 0.40 1.77 9.06 45.56 0.41 2.18 16 33 H 0.17 2.15 6.41 -52.49 -0.34 1.81 16 34 H 0.40 6.02 6.65 -40.82 -0.27 5.75 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.39 10.18 7.33 -40.82 -0.30 9.88 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.10 1.34 8.11 -51.93 -0.42 0.92 16 40 H 0.09 1.31 8.05 -51.93 -0.42 0.90 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.12 1.91 5.02 -51.93 -0.26 1.65 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -35.16 361.44 -7.21 -42.37 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -4.77 Total: 15.88 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.09 Total: 3.22 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: 0.02 Total: -64.88 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.79 Total: -19.32 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.16 -7.21 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754451710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.643 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds