Wall clock time and date at job start Tue Mar 31 2020 13:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35529 * 116.99812 * 2 1 4 4 C 1.38819 * 120.89293 * 359.97438 * 3 2 1 5 5 C 1.38708 * 119.19700 * 179.69874 * 4 3 2 6 6 O 1.35518 * 119.47659 * 180.30150 * 5 4 3 7 7 N 1.32602 * 121.05515 * 0.27840 * 5 4 3 8 8 C 1.31614 * 121.97312 * 359.97438 * 7 5 4 9 9 C 1.39547 * 120.67160 * 0.02850 * 8 7 5 10 10 C 1.47341 * 120.55620 * 179.97438 * 9 8 7 11 11 O 1.21613 * 119.99980 * 179.97438 * 10 9 8 12 12 N 1.34771 * 119.99889 * 359.97438 * 10 9 8 13 13 C 1.46497 * 120.00198 * 179.97438 * 12 10 9 14 14 H 1.09009 * 109.47035 * 35.00370 * 13 12 10 15 15 C 1.53001 * 109.47577 * 155.00032 * 13 12 10 16 16 N 1.46508 * 109.46724 * 305.00339 * 15 13 12 17 17 C 1.36933 * 119.99544 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00267 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99519 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46974 * 60.00570 * 21 19 17 23 23 H 1.48500 * 109.46843 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47236 * 300.00505 * 21 19 17 25 25 C 1.53000 * 109.47470 * 275.00420 * 13 12 10 26 26 C 1.52997 * 117.50078 * 128.74154 * 25 13 12 27 27 C 1.52997 * 117.49752 * 60.08368 * 25 13 12 28 28 H 1.09007 * 109.46850 * 299.99807 * 1 2 3 29 29 H 1.09001 * 109.47083 * 59.99857 * 1 2 3 30 30 H 1.08994 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.40618 * 359.97438 * 4 3 2 32 32 H 0.96701 * 114.00311 * 89.99890 * 6 5 4 33 33 H 1.08000 * 119.66050 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99931 * 0.02562 * 12 10 9 35 35 H 1.08996 * 109.47039 * 64.99808 * 15 13 12 36 36 H 1.09000 * 109.47465 * 185.00415 * 15 13 12 37 37 H 0.96994 * 119.99890 * 359.97438 * 16 15 13 38 38 H 0.96995 * 119.99176 * 179.97438 * 20 19 17 39 39 H 1.09001 * 115.54906 * 274.41855 * 25 13 12 40 40 H 1.09000 * 117.50189 * 0.02562 * 26 25 13 41 41 H 1.09000 * 117.49761 * 145.01991 * 26 25 13 42 42 H 1.09000 * 117.49732 * 214.98120 * 27 25 13 43 43 H 1.09006 * 117.50196 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.3064 2.3834 -0.0005 5 6 1.9724 3.6002 0.0059 6 8 1.2577 4.7515 0.0116 7 7 3.2973 3.6548 0.0069 8 6 4.0397 2.5680 0.0025 9 6 3.4501 1.3032 -0.0041 10 6 4.2835 0.0883 -0.0096 11 8 3.7590 -1.0089 -0.0149 12 7 5.6272 0.1929 -0.0088 13 6 6.4560 -1.0151 -0.0137 14 1 5.9675 -1.7885 -0.6067 15 6 7.8227 -0.6936 -0.6216 16 7 7.6397 -0.1052 -1.9508 17 6 8.7302 0.2662 -2.6911 18 1 9.7251 0.1250 -2.2953 19 6 8.5569 0.8232 -3.9507 20 7 7.3444 0.9947 -4.4332 21 14 10.0445 1.3292 -4.9609 22 1 10.9018 0.1421 -5.2085 23 1 9.5932 1.8924 -6.2587 24 1 10.8212 2.3545 -4.2189 25 6 6.6404 -1.5130 1.4212 26 6 6.3295 -2.9841 1.7040 27 6 5.3820 -1.8913 2.2049 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2269 2.3514 -0.0014 32 1 1.0500 5.0812 0.8966 33 1 5.1161 2.6560 0.0031 34 1 6.0455 1.0680 -0.0042 35 1 8.3482 0.0140 0.0197 36 1 8.4071 -1.6097 -0.7071 37 1 6.7462 0.0212 -2.3063 38 1 7.2234 1.3843 -5.3133 39 1 7.4602 -1.0562 1.9756 40 1 5.9940 -3.5975 0.8677 41 1 6.9446 -3.4952 2.4447 42 1 5.3741 -1.6838 3.2749 43 1 4.4226 -1.7851 1.6984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754451710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:50 Heat of formation + Delta-G solvation = -55.983393 kcal Electronic energy + Delta-G solvation = -27422.940002 eV Core-core repulsion = 23469.596265 eV Total energy + Delta-G solvation = -3953.343737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16135 -40.71833 -39.77592 -38.38688 -37.75258 -36.58742 -34.98158 -33.15265 -32.68622 -31.72811 -29.57486 -28.42152 -26.03468 -25.31078 -24.10485 -23.26890 -23.02105 -22.11533 -21.28914 -20.34381 -19.39351 -18.80628 -18.53686 -17.88841 -17.09908 -17.08411 -16.67418 -16.41803 -16.30120 -15.96546 -15.80092 -15.46679 -15.16718 -15.02076 -14.78793 -14.39678 -14.11765 -13.70460 -13.63263 -13.15851 -12.98017 -12.74171 -12.69292 -12.55308 -12.50024 -12.42663 -12.25385 -12.09775 -11.82508 -11.31393 -11.13090 -10.97233 -10.92553 -10.50712 -10.26281 -10.08987 -9.83222 -8.99172 -7.91861 -5.21487 -0.54662 0.08615 1.49850 1.52488 1.58495 1.76853 2.02774 2.10503 2.47176 2.58178 2.66602 3.04781 3.40667 3.42575 3.59560 3.62533 3.67154 3.98721 4.08850 4.15950 4.18903 4.21406 4.32365 4.34612 4.36899 4.40562 4.49969 4.64605 4.67556 4.71104 4.85622 4.93671 5.07897 5.15309 5.18005 5.33063 5.41283 5.52824 5.60753 6.08736 6.28138 6.51260 6.59505 6.75752 7.27649 7.35923 8.09376 8.33193 9.30961 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.004304 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.283050 B = 6504.016201 C = 8405.942520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.298 6.298 3 C 0.229 3.771 4 C -0.279 4.279 5 C 0.368 3.632 6 O -0.483 6.483 7 N -0.550 5.550 8 C 0.204 3.796 9 C -0.251 4.251 10 C 0.569 3.431 11 O -0.553 6.553 12 N -0.701 5.701 13 C 0.181 3.819 14 H 0.059 0.941 15 C 0.150 3.850 16 N -0.743 5.743 17 C -0.243 4.243 18 H 0.081 0.919 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.280 1.280 23 H -0.300 1.300 24 H -0.274 1.274 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.182 4.182 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.183 0.817 32 H 0.428 0.572 33 H 0.180 0.820 34 H 0.406 0.594 35 H 0.044 0.956 36 H 0.038 0.962 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 1.459 17.148 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.206 6.206 3 C 0.173 3.827 4 C -0.301 4.301 5 C 0.191 3.809 6 O -0.294 6.294 7 N -0.272 5.272 8 C 0.045 3.955 9 C -0.258 4.258 10 C 0.356 3.644 11 O -0.433 6.433 12 N -0.352 5.352 13 C 0.076 3.924 14 H 0.077 0.923 15 C 0.023 3.977 16 N -0.386 5.386 17 C -0.375 4.375 18 H 0.098 0.902 19 C -0.265 4.265 20 N -0.620 5.620 21 Si 0.801 3.199 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.200 1.200 25 C -0.183 4.183 26 C -0.201 4.201 27 C -0.219 4.219 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.200 0.800 32 H 0.292 0.708 33 H 0.197 0.803 34 H 0.242 0.758 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.206 0.794 38 H 0.058 0.942 39 H 0.141 0.859 40 H 0.099 0.901 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.678 1.252 16.532 21.493 hybrid contribution -0.046 0.146 -0.754 0.770 sum -13.724 1.398 15.778 20.958 Atomic orbital electron populations 1.23603 0.75616 1.06231 1.03223 1.86365 1.24005 1.24918 1.85341 1.19288 0.90666 0.85728 0.87032 1.22249 1.03456 0.90257 1.14153 1.19200 0.86324 0.85933 0.89442 1.84672 1.70635 1.37935 1.36196 1.67250 1.07525 1.33304 1.19163 1.22809 1.00434 0.84611 0.87645 1.20522 0.92204 0.95658 1.17397 1.17815 0.82305 0.88257 0.75989 1.90710 1.73324 1.28277 1.50986 1.45792 1.05089 1.10297 1.74003 1.20571 0.90602 0.86685 0.94563 0.92284 1.21058 0.93722 0.96880 0.86016 1.42523 1.05799 1.74553 1.15750 1.19603 0.88410 1.32121 0.97359 0.90160 1.25538 0.98888 1.02946 0.99116 1.69833 1.21702 1.51793 1.18644 0.85233 0.78911 0.78127 0.77597 1.20577 1.22674 1.20033 1.22568 1.01038 0.99274 0.95467 1.22971 1.03134 0.90593 1.03394 1.23184 0.95164 1.03552 0.99995 0.89885 0.91035 0.86387 0.80019 0.70824 0.80294 0.75772 0.93852 0.94408 0.79446 0.94232 0.85886 0.90089 0.86596 0.87911 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.84 113.37 1.12 1.22 16 2 O -0.30 -8.13 8.71 -67.97 -0.59 -8.73 16 3 C 0.23 6.27 6.74 23.06 0.16 6.42 16 4 C -0.28 -5.88 9.02 22.52 0.20 -5.67 16 5 C 0.37 8.58 7.73 84.69 0.65 9.24 16 6 O -0.48 -8.59 13.54 -88.20 -1.19 -9.79 16 7 N -0.55 -15.43 10.37 -307.94 -3.19 -18.62 16 8 C 0.20 5.79 10.71 85.04 0.91 6.70 16 9 C -0.25 -7.74 5.90 -19.91 -0.12 -7.86 16 10 C 0.57 19.93 7.10 86.64 0.61 20.55 16 11 O -0.55 -22.12 12.30 16.29 0.20 -21.92 16 12 N -0.70 -23.13 4.45 -445.88 -1.98 -25.11 16 13 C 0.18 6.14 2.43 44.99 0.11 6.25 16 14 H 0.06 2.37 7.33 -2.38 -0.02 2.35 16 15 C 0.15 5.72 5.80 86.38 0.50 6.22 16 16 N -0.74 -36.87 5.43 -343.44 -1.87 -38.74 16 17 C -0.24 -13.28 9.99 84.04 0.84 -12.44 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 20 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 21 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 C -0.16 -4.45 5.36 -10.80 -0.06 -4.51 16 26 C -0.16 -4.10 10.18 30.62 0.31 -3.79 16 27 C -0.18 -4.87 9.73 30.62 0.30 -4.57 16 28 H 0.08 0.82 7.71 -2.38 -0.02 0.80 16 29 H 0.07 0.91 7.70 -2.39 -0.02 0.89 16 30 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.18 2.46 6.45 -2.91 -0.02 2.44 16 32 H 0.43 2.59 9.06 -74.06 -0.67 1.92 16 33 H 0.18 4.58 6.41 -2.91 -0.02 4.56 16 34 H 0.41 12.45 6.65 -92.71 -0.62 11.83 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.37 20.30 7.33 -92.71 -0.68 19.62 16 38 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 40 H 0.08 2.25 8.05 -2.39 -0.02 2.24 16 41 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.09 3.05 5.02 -2.38 -0.01 3.04 16 Total: -1.00 -76.72 361.44 -1.19 -77.91 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -0.88 Total: 42.38 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.00 Total: 14.08 kcal Atomic # 7 Polarization: -135.21 SS G_CDS: -6.76 Total: -141.97 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.59 Total: -40.43 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -76.72 -1.19 -77.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754451710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.931 kcal (2) G-P(sol) polarization free energy of solvation -76.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds